Wall clock time and date at job start Fri Apr 10 2020 23:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99371 * 2 1 4 4 H 1.48500 * 109.47326 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47149 * 120.00133 * 3 2 1 6 6 H 1.48501 * 109.46920 * 240.00021 * 3 2 1 7 7 C 1.37872 * 120.00647 * 179.72706 * 2 1 3 8 8 H 1.07999 * 120.00476 * 186.39484 * 7 2 1 9 9 C 1.50700 * 119.99863 * 6.39237 * 7 2 1 10 10 O 1.45203 * 112.85151 * 293.84874 * 9 7 2 11 11 C 1.34227 * 116.99828 * 295.44740 * 10 9 7 12 12 O 1.20835 * 119.99977 * 1.21927 * 11 10 9 13 13 C 1.50699 * 120.00206 * 181.21914 * 11 10 9 14 14 H 1.08997 * 108.60916 * 339.04399 * 13 11 10 15 15 C 1.51867 * 108.66115 * 221.13389 * 13 11 10 16 16 C 1.53531 * 108.97358 * 178.61832 * 15 13 11 17 17 S 1.81624 * 107.28278 * 72.68470 * 16 15 13 18 18 C 1.76462 * 102.60503 * 313.56570 * 17 16 15 19 19 C 1.39634 * 117.71766 * 192.75762 * 18 17 16 20 20 C 1.37737 * 120.63195 * 180.71779 * 19 18 17 21 21 C 1.38342 * 119.50672 * 359.97438 * 20 19 18 22 22 C 1.37767 * 120.01133 * 359.72631 * 21 20 19 23 23 C 1.38183 * 122.30674 * 12.97774 * 18 17 16 24 24 C 1.53779 * 113.61445 * 162.53856 * 9 7 2 25 25 C 1.53780 * 87.08474 * 220.02026 * 24 9 7 26 26 C 1.53784 * 87.07865 * 25.43390 * 25 24 9 27 27 H 0.97008 * 119.99590 * 175.01900 * 1 2 3 28 28 H 1.09007 * 109.55338 * 298.47067 * 15 13 11 29 29 H 1.08998 * 109.55680 * 58.77137 * 15 13 11 30 30 H 1.08997 * 109.89010 * 313.24407 * 16 15 13 31 31 H 1.09003 * 109.95851 * 192.15812 * 16 15 13 32 32 H 1.08004 * 119.68102 * 0.74837 * 19 18 17 33 33 H 1.08004 * 120.24961 * 180.02562 * 20 19 18 34 34 H 1.07995 * 119.99605 * 179.74080 * 21 20 19 35 35 H 1.08003 * 119.47056 * 180.02562 * 22 21 20 36 36 H 1.08996 * 113.61688 * 334.57250 * 24 9 7 37 37 H 1.09003 * 113.61752 * 105.47569 * 24 9 7 38 38 H 1.09000 * 113.61700 * 270.89014 * 25 24 9 39 39 H 1.08992 * 113.61675 * 139.97898 * 25 24 9 40 40 H 1.09009 * 113.61409 * 220.02098 * 26 25 24 41 41 H 1.08996 * 113.69057 * 89.12769 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 1.2839 2.7465 0.0006 5 1 3.1028 1.6966 1.2125 6 1 3.1027 1.6966 -1.2125 7 6 2.0046 -1.1939 0.0057 8 1 3.0796 -1.1963 0.1099 9 6 1.2583 -2.4957 -0.1334 10 8 0.3939 -2.7740 0.9996 11 6 0.9892 -2.9679 2.1870 12 8 2.1910 -2.8853 2.2810 13 6 0.1586 -3.2885 3.4029 14 1 -0.8646 -2.9595 3.2218 15 6 0.7122 -2.5156 4.5872 16 6 -0.1502 -2.8103 5.8227 17 16 0.2272 -4.5062 6.3521 18 6 0.1732 -5.4045 4.8342 19 6 0.1521 -6.7989 4.9051 20 6 0.1248 -7.5596 3.7572 21 6 0.1178 -6.9324 2.5242 22 6 0.1323 -5.5568 2.4507 23 6 0.1563 -4.7754 3.6040 24 6 2.1544 -3.6799 -0.5325 25 6 1.0084 -4.1360 -1.4510 26 6 0.5631 -2.6648 -1.4947 27 1 -0.4850 -0.8370 -0.0729 28 1 1.7398 -2.8258 4.7770 29 1 0.6861 -1.4478 4.3703 30 1 -1.2063 -2.7283 5.5660 31 1 0.0928 -2.1097 6.6217 32 1 0.1567 -7.2855 5.8693 33 1 0.1081 -8.6377 3.8193 34 1 0.1006 -7.5212 1.6190 35 1 0.1262 -5.0763 1.4835 36 1 3.0545 -3.3842 -1.0714 37 1 2.3578 -4.3693 0.2870 38 1 0.2916 -4.7947 -0.9606 39 1 1.3465 -4.5186 -2.4139 40 1 -0.5183 -2.5344 -1.4519 41 1 1.0272 -2.0903 -2.2963 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842351826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:41:05 Heat of formation + Delta-G solvation = -61.152011 kcal Electronic energy + Delta-G solvation = -25389.388321 eV Core-core repulsion = 21939.017965 eV Total energy + Delta-G solvation = -3450.370356 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.93526 -40.36914 -39.05521 -36.53399 -36.13928 -34.56560 -32.27531 -31.82858 -29.11964 -27.97817 -26.59285 -24.89123 -24.23629 -23.81047 -23.09598 -21.23748 -20.33267 -19.52726 -18.81594 -18.09007 -17.26696 -17.17455 -16.73042 -16.44461 -16.04959 -15.72076 -15.70349 -15.26607 -14.74077 -14.72137 -14.50254 -14.24795 -14.22454 -13.83879 -13.69918 -13.35411 -13.25547 -12.79163 -12.59352 -12.52529 -12.33951 -12.29356 -12.07402 -11.95558 -11.88656 -11.79045 -11.43786 -11.14684 -10.92250 -10.73592 -10.58561 -10.19309 -9.86613 -8.64845 -8.45031 -6.43958 0.07911 0.22846 0.52883 1.26521 1.42576 1.47773 1.51990 1.74203 1.92721 2.49207 2.62510 3.12519 3.25793 3.46381 3.55476 3.76635 3.78536 3.89581 3.95815 3.98111 4.08069 4.11005 4.23988 4.33148 4.40908 4.48486 4.54370 4.61343 4.68467 4.69044 4.84498 4.88481 4.91003 4.95561 5.02767 5.18071 5.31395 5.33851 5.45402 5.48951 5.71056 5.85782 6.06337 6.19244 6.56959 7.09593 7.38681 8.72676 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.015636 B = 0.005199 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.350765 B = 5383.885380 C = 6725.545285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.009 4.009 3 Si 1.103 2.897 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.609 4.609 8 H 0.035 0.965 9 C 0.189 3.811 10 O -0.361 6.361 11 C 0.474 3.526 12 O -0.530 6.530 13 C -0.043 4.043 14 H 0.108 0.892 15 C -0.108 4.108 16 C -0.092 4.092 17 S -0.115 6.115 18 C -0.082 4.082 19 C -0.104 4.104 20 C -0.094 4.094 21 C -0.118 4.118 22 C -0.128 4.128 23 C -0.090 4.090 24 C -0.142 4.142 25 C -0.120 4.120 26 C -0.109 4.109 27 H 0.270 0.730 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.168 0.832 34 H 0.149 0.851 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.053 0.947 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.370 -12.759 8.802 15.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.212 4.212 3 Si 0.926 3.074 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.646 4.646 8 H 0.053 0.947 9 C 0.155 3.845 10 O -0.278 6.278 11 C 0.317 3.683 12 O -0.419 6.419 13 C -0.062 4.062 14 H 0.126 0.874 15 C -0.147 4.147 16 C -0.240 4.240 17 S 0.127 5.873 18 C -0.195 4.195 19 C -0.127 4.127 20 C -0.113 4.113 21 C -0.138 4.138 22 C -0.147 4.147 23 C -0.097 4.097 24 C -0.180 4.180 25 C -0.158 4.158 26 C -0.147 4.147 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.126 0.874 31 H 0.162 0.838 32 H 0.170 0.830 33 H 0.186 0.814 34 H 0.167 0.833 35 H 0.125 0.875 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.999 -11.379 10.034 15.465 hybrid contribution 0.239 -0.684 -1.651 1.803 sum -2.761 -12.063 8.383 14.947 Atomic orbital electron populations 1.70816 1.07267 1.31561 1.44975 1.27034 0.96649 1.05551 0.91928 0.83112 0.74439 0.72216 0.77644 1.20135 1.21119 1.19132 1.22207 0.94107 0.92404 1.55919 0.94710 1.21114 0.88199 0.93382 0.81849 1.86404 1.44072 1.79449 1.17867 1.23247 0.87450 0.72563 0.85062 1.90551 1.17478 1.47525 1.86349 1.19713 1.00750 0.93992 0.91744 0.87399 1.21479 1.00145 1.00692 0.92381 1.23835 1.03633 0.95717 1.00790 1.85181 1.89023 1.04798 1.08269 1.21503 1.05221 0.97844 0.94898 1.21246 1.00413 0.90367 1.00704 1.21485 0.97277 1.01609 0.90922 1.21362 0.99397 0.93175 0.99868 1.21491 1.00269 0.95833 0.97150 1.19055 1.04515 0.92359 0.93736 1.23255 0.98157 0.97628 0.98980 1.22835 0.97194 0.95571 1.00155 1.22894 0.99380 0.96698 0.95743 0.91872 0.90603 0.89908 0.87395 0.83769 0.82979 0.81406 0.83346 0.87546 0.90377 0.93745 0.89887 0.89148 0.92828 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.47 13.53 21.45 0.29 -53.18 16 2 C -0.01 -0.49 5.36 84.65 0.45 -0.04 16 3 Si 1.10 50.70 29.91 68.60 2.05 52.75 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.61 -34.85 7.37 25.60 0.19 -34.66 16 8 H 0.03 2.10 7.82 -2.91 -0.02 2.08 16 9 C 0.19 9.49 0.11 -11.01 0.00 9.49 16 10 O -0.36 -17.90 8.41 -51.39 -0.43 -18.33 16 11 C 0.47 22.13 4.76 71.24 0.34 22.47 16 12 O -0.53 -28.09 14.46 21.94 0.32 -27.77 16 13 C -0.04 -1.56 2.40 -12.86 -0.03 -1.59 16 14 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 15 C -0.11 -3.48 4.76 30.40 0.14 -3.33 16 16 C -0.09 -2.12 6.53 72.16 0.47 -1.65 16 17 S -0.12 -2.81 21.99 -56.49 -1.24 -4.05 16 18 C -0.08 -2.32 6.05 22.59 0.14 -2.18 16 19 C -0.10 -2.37 9.65 22.49 0.22 -2.15 16 20 C -0.09 -1.88 10.06 22.18 0.22 -1.66 16 21 C -0.12 -2.90 10.03 22.18 0.22 -2.67 16 22 C -0.13 -4.14 8.94 22.42 0.20 -3.94 16 23 C -0.09 -2.99 5.52 -19.82 -0.11 -3.10 16 24 C -0.14 -6.28 6.89 31.12 0.21 -6.07 16 25 C -0.12 -4.37 8.03 31.12 0.25 -4.12 16 26 C -0.11 -4.84 6.55 31.12 0.20 -4.64 16 27 H 0.27 15.94 5.76 -92.70 -0.53 15.40 16 28 H 0.08 2.69 7.76 -2.38 -0.02 2.67 16 29 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.11 2.26 8.07 -2.39 -0.02 2.24 16 31 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.15 2.64 8.05 -2.91 -0.02 2.62 16 33 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 35 H 0.11 3.89 6.26 -2.91 -0.02 3.87 16 36 H 0.08 3.44 8.09 -2.39 -0.02 3.42 16 37 H 0.04 2.00 7.33 -2.39 -0.02 1.98 16 38 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.05 2.39 7.74 -2.38 -0.02 2.37 16 41 H 0.08 3.68 8.09 -2.39 -0.02 3.67 16 Total: -1.00 -70.63 344.44 5.37 -65.25 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 1.27 Total: 25.17 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 3.12 Total: -39.85 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.29 Total: -53.18 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -0.12 Total: -46.10 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.05 Total: 52.75 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -1.24 Total: -4.05 kcal Total: -70.63 5.37 -65.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842351826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.102 kcal (2) G-P(sol) polarization free energy of solvation -70.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds