Wall clock time and date at job start Fri Apr 10 2020 23:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00006 * 2 1 4 4 H 1.48500 * 109.47139 * 240.00214 * 3 2 1 5 5 H 1.48499 * 109.47314 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46924 * 120.00462 * 3 2 1 7 7 C 1.37878 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99906 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00216 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47449 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47547 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.47291 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99734 * 180.02562 * 12 11 10 14 14 O 1.21366 * 120.00329 * 359.97438 * 13 12 11 15 15 C 1.49311 * 119.99870 * 179.97438 * 13 12 11 16 16 O 1.21388 * 119.99805 * 359.97438 * 15 13 12 17 17 N 1.34778 * 119.99870 * 179.97438 * 15 13 12 18 18 C 1.39173 * 119.99843 * 185.52690 * 17 15 13 19 19 C 1.36594 * 120.69167 * 24.86253 * 18 17 15 20 20 C 1.39668 * 121.75086 * 179.97438 * 19 18 17 21 21 C 1.35584 * 122.71371 * 0.06996 * 20 19 18 22 22 C 1.40707 * 120.09561 * 359.91440 * 21 20 19 23 23 N 1.31059 * 138.74977 * 180.02562 * 22 21 20 24 24 O 1.21504 * 109.06322 * 180.02562 * 23 22 21 25 25 N 1.21511 * 116.27299 * 0.02562 * 24 23 22 26 26 C 1.30644 * 109.09581 * 359.97438 * 25 24 23 27 27 H 0.97003 * 119.99669 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.46887 * 59.99783 * 9 7 2 29 29 H 1.09000 * 109.46967 * 300.00265 * 9 7 2 30 30 H 1.09006 * 109.47117 * 60.00091 * 10 9 7 31 31 H 1.09000 * 109.47389 * 300.00174 * 10 9 7 32 32 H 1.09006 * 109.46868 * 59.99902 * 11 10 9 33 33 H 1.09000 * 109.46888 * 300.00444 * 11 10 9 34 34 H 0.96996 * 120.00499 * 359.97438 * 12 11 10 35 35 H 0.96999 * 119.99762 * 5.52884 * 17 15 13 36 36 H 1.07996 * 119.12177 * 0.02562 * 19 18 17 37 37 H 1.07998 * 118.64512 * 179.97438 * 20 19 18 38 38 H 1.07997 * 119.95185 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0018 11 6 1.4802 -4.9871 -0.0025 12 7 2.4322 -6.1006 -0.0031 13 6 1.9829 -7.3713 -0.0042 14 8 0.7897 -7.5931 -0.0043 15 6 2.9532 -8.5062 -0.0054 16 8 4.1466 -8.2843 -0.0059 17 7 2.5039 -9.7768 -0.0061 18 6 3.4030 -10.8329 0.1089 19 6 4.6166 -10.6530 0.7095 20 6 5.5353 -11.6972 0.8372 21 6 5.2904 -12.9491 0.3777 22 6 4.0692 -13.2413 -0.2571 23 7 3.4681 -14.2642 -0.8139 24 8 2.3752 -13.9134 -1.2125 25 7 2.0816 -12.7496 -1.0232 26 6 3.0693 -12.1541 -0.4095 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5566 -0.8903 29 1 0.6247 -2.5570 0.8897 30 1 2.8726 -3.6047 0.8878 31 1 2.8712 -3.6039 -0.8922 32 1 0.8532 -5.0442 -0.8923 33 1 0.8539 -5.0455 0.8877 34 1 3.3858 -5.9234 -0.0034 35 1 1.5538 -9.9553 -0.0867 36 1 4.8721 -9.6777 1.0965 37 1 6.4805 -11.4989 1.3206 38 1 6.0333 -13.7233 0.5001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847487275.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:41:19 Heat of formation + Delta-G solvation = 68.650681 kcal Electronic energy + Delta-G solvation = -24566.720182 eV Core-core repulsion = 20607.978030 eV Total energy + Delta-G solvation = -3958.742152 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.08321 -41.47194 -39.51412 -38.35795 -36.23163 -35.56588 -34.76671 -33.64292 -33.42510 -31.37042 -30.51798 -27.45339 -26.35946 -25.39306 -24.91503 -23.01955 -21.39496 -21.06280 -20.75101 -19.50973 -19.35237 -19.04311 -18.08858 -17.33244 -16.76579 -16.44041 -16.31632 -15.92176 -15.43534 -15.14771 -14.68332 -14.50514 -14.10607 -13.90653 -13.60003 -13.38476 -13.09596 -12.45687 -12.42325 -12.36235 -12.15623 -11.97881 -11.91817 -11.73773 -11.08986 -10.93877 -10.84821 -10.68103 -10.34420 -10.00063 -9.98290 -9.50308 -9.21115 -9.17594 -8.50677 -8.42447 -6.07227 -4.10677 -0.50909 0.65604 0.90632 1.47662 1.78309 2.51912 2.71276 2.90319 2.97067 3.12807 3.29041 3.34076 3.35853 3.42413 4.03127 4.12147 4.35153 4.40192 4.46810 4.68056 4.88779 5.12393 5.28709 5.41064 5.46052 5.54683 5.57711 5.71813 5.96862 6.02883 6.06308 6.38774 6.43904 6.61382 6.86266 7.00915 7.31909 7.55373 7.66464 7.77242 7.90504 7.98019 8.31088 8.95464 9.53911 11.03904 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.036897 B = 0.001896 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.683276 B =14764.922249 C =15384.462729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.123 4.123 11 C 0.112 3.888 12 N -0.685 5.685 13 C 0.504 3.496 14 O -0.517 6.517 15 C 0.512 3.488 16 O -0.489 6.489 17 N -0.636 5.636 18 C 0.205 3.795 19 C -0.121 4.121 20 C -0.048 4.048 21 C -0.100 4.100 22 C 0.046 3.954 23 N -0.347 5.347 24 O 0.373 5.627 25 N -0.333 5.333 26 C 0.000 4.000 27 H 0.262 0.738 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.412 0.588 35 H 0.431 0.569 36 H 0.168 0.832 37 H 0.149 0.851 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.148 -27.016 1.711 28.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.337 5.337 13 C 0.283 3.717 14 O -0.393 6.393 15 C 0.295 3.705 16 O -0.362 6.362 17 N -0.281 5.281 18 C 0.105 3.895 19 C -0.146 4.146 20 C -0.071 4.071 21 C -0.121 4.121 22 C -0.107 4.107 23 N -0.070 5.070 24 O 0.137 5.863 25 N -0.052 5.052 26 C -0.156 4.156 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.249 0.751 35 H 0.270 0.730 36 H 0.185 0.815 37 H 0.167 0.833 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.156 -27.505 1.161 29.012 hybrid contribution 0.894 1.439 0.271 1.716 sum 10.050 -26.067 1.431 27.974 Atomic orbital electron populations 1.69948 1.06063 1.26897 1.50302 1.25028 0.94880 0.99355 0.95179 0.86624 0.79553 0.82986 0.78632 1.20212 1.21257 1.20215 1.21144 0.93004 0.90853 1.51297 0.92608 1.19027 0.93776 0.90737 0.97764 1.21941 0.99929 0.92813 1.01395 1.21930 0.91669 0.84483 1.02831 1.46068 1.12466 1.04693 1.70453 1.19550 0.88091 0.84228 0.79861 1.90818 1.15576 1.84407 1.48524 1.20672 0.89264 0.83808 0.76774 1.90746 1.16021 1.84333 1.45110 1.43019 1.11865 1.03880 1.69350 1.17135 0.92076 0.82179 0.98100 1.21272 0.92079 1.02396 0.98853 1.20782 0.99522 0.90761 0.96006 1.19841 0.93502 0.98301 1.00448 1.22746 0.98772 0.87517 1.01709 1.75290 0.95575 1.21926 1.14217 1.85417 1.25938 1.20277 1.54685 1.75117 1.21512 0.93183 1.15398 1.23680 0.91713 0.97562 1.02677 0.92813 0.96174 0.96160 0.92329 0.92348 0.90810 0.90795 0.75143 0.73046 0.81499 0.83310 0.83498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.23 5.27 -26.73 -0.14 -2.37 16 11 C 0.11 1.77 5.67 -4.04 -0.02 1.75 16 12 N -0.69 -8.98 5.55 -60.77 -0.34 -9.31 16 13 C 0.50 6.61 7.88 -11.65 -0.09 6.52 16 14 O -0.52 -8.02 16.48 5.48 0.09 -7.93 16 15 C 0.51 5.71 7.68 -11.65 -0.09 5.62 16 16 O -0.49 -5.73 13.67 5.46 0.07 -5.65 16 17 N -0.64 -6.28 5.35 -9.22 -0.05 -6.33 16 18 C 0.20 1.93 6.59 -82.10 -0.54 1.39 16 19 C -0.12 -0.95 8.66 -39.64 -0.34 -1.30 16 20 C -0.05 -0.26 9.84 -40.00 -0.39 -0.66 16 21 C -0.10 -0.62 10.03 -39.60 -0.40 -1.02 16 22 C 0.05 0.41 7.77 -83.04 -0.64 -0.23 16 23 N -0.35 -3.33 12.29 31.89 0.39 -2.93 16 24 O 0.37 3.56 11.67 26.92 0.31 3.87 16 25 N -0.33 -3.42 12.27 32.74 0.40 -3.02 16 26 C 0.00 0.00 7.91 -81.13 -0.64 -0.64 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.41 4.72 7.94 -40.82 -0.32 4.40 16 35 H 0.43 4.01 8.29 -40.82 -0.34 3.68 16 36 H 0.17 1.36 5.71 -52.49 -0.30 1.06 16 37 H 0.15 0.36 8.06 -52.49 -0.42 -0.06 16 38 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 LS Contribution 341.24 15.07 5.14 5.14 Total: -1.00 -31.24 341.24 -6.00 -37.24 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -3.89 Total: 1.82 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -3.86 Total: -3.52 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 1.14 Total: -47.04 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.48 Total: -9.70 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.24 -6.00 -37.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847487275.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.891 kcal (2) G-P(sol) polarization free energy of solvation -31.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds