Wall clock time and date at job start Fri Apr 10 2020 23:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86800 * 119.99718 * 2 1 4 4 H 1.48501 * 109.47052 * 240.00068 * 3 2 1 5 5 H 1.48503 * 109.46905 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47123 * 120.00119 * 3 2 1 7 7 C 1.38813 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99959 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99976 * 359.97438 * 7 2 1 10 10 C 1.76205 * 99.99704 * 185.65716 * 9 7 2 11 11 C 1.39111 * 120.19550 * 6.84980 * 10 9 7 12 12 C 1.37904 * 120.05341 * 180.25906 * 11 10 9 13 13 C 1.38678 * 120.45367 * 359.73926 * 12 11 10 14 14 C 1.37775 * 120.38866 * 0.02683 * 13 12 11 15 15 C 1.39751 * 119.93418 * 359.97438 * 14 13 12 16 16 C 1.47281 * 120.22067 * 179.97438 * 15 14 13 17 17 O 1.21538 * 119.99939 * 179.97438 * 16 15 14 18 18 O 1.34781 * 120.00142 * 359.97438 * 16 15 14 19 19 C 1.45205 * 117.00001 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.46822 * 179.97438 * 19 18 16 21 21 H 1.09004 * 110.67432 * 51.77082 * 20 19 18 22 22 C 1.54890 * 110.75436 * 175.00144 * 20 19 18 23 23 C 1.54266 * 104.20033 * 156.25787 * 22 20 19 24 24 H 1.09001 * 117.41053 * 116.36557 * 23 22 20 25 25 C 1.52998 * 118.19929 * 272.21973 * 23 22 20 26 26 C 1.53002 * 60.38188 * 93.61013 * 25 23 22 27 27 H 1.08998 * 119.29820 * 111.30448 * 26 25 23 28 28 C 1.54267 * 118.19494 * 266.38153 * 26 25 23 29 29 H 0.96995 * 120.00027 * 359.97438 * 1 2 3 30 30 H 1.08008 * 119.97209 * 0.02562 * 11 10 9 31 31 H 1.08006 * 119.77183 * 179.76559 * 12 11 10 32 32 H 1.08002 * 119.80724 * 180.02562 * 13 12 11 33 33 H 1.07995 * 120.03645 * 179.97438 * 14 13 12 34 34 H 1.08997 * 109.46677 * 60.00664 * 19 18 16 35 35 H 1.08997 * 109.47042 * 300.00465 * 19 18 16 36 36 H 1.08997 * 110.48932 * 274.94039 * 22 20 19 37 37 H 1.09004 * 110.48642 * 37.58365 * 22 20 19 38 38 H 1.08998 * 117.45649 * 201.21229 * 25 23 22 39 39 H 1.09005 * 117.46134 * 346.00534 * 25 23 22 40 40 H 1.08996 * 110.48813 * 329.11343 * 28 26 25 41 41 H 1.08998 * 110.48177 * 206.46141 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1032 1.6965 1.2124 7 6 2.0097 -1.2021 -0.0005 8 1 3.0896 -1.2021 -0.0010 9 16 1.1287 -2.7281 -0.0005 10 6 2.4713 -3.8565 0.1697 11 6 3.7587 -3.3824 0.4004 12 6 4.8082 -4.2679 0.5279 13 6 4.5905 -5.6342 0.4332 14 6 3.3223 -6.1241 0.2098 15 6 2.2469 -5.2413 0.0781 16 6 0.8887 -5.7581 -0.1613 17 8 -0.0437 -4.9868 -0.2748 18 8 0.6797 -7.0864 -0.2546 19 6 -0.6845 -7.5241 -0.4908 20 6 -0.7240 -9.0517 -0.5668 21 1 -0.2361 -9.4930 0.3023 22 6 -2.1825 -9.5574 -0.6932 23 6 -2.0461 -10.9445 -1.3544 24 1 -2.3692 -11.8101 -0.7761 25 6 -2.0229 -11.0178 -2.8825 26 6 -0.7050 -10.9416 -2.1090 27 1 -0.0445 -11.8086 -2.0941 28 6 -0.0734 -9.5529 -1.8800 29 1 -0.4850 0.8400 0.0004 30 1 3.9369 -2.3198 0.4760 31 1 5.8064 -3.8947 0.7031 32 1 5.4200 -6.3183 0.5351 33 1 3.1594 -7.1892 0.1366 34 1 -1.0430 -7.1045 -1.4307 35 1 -1.3217 -7.1839 0.3255 36 1 -2.6417 -9.6476 0.2912 37 1 -2.7647 -8.8884 -1.3269 38 1 -2.2806 -11.9711 -3.3439 39 1 -2.3347 -10.1302 -3.4331 40 1 -0.3150 -8.8832 -2.7053 41 1 1.0066 -9.6400 -1.7616 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851413780.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:41:44 Heat of formation + Delta-G solvation = -55.966388 kcal Electronic energy + Delta-G solvation = -23248.128003 eV Core-core repulsion = 19797.982513 eV Total energy + Delta-G solvation = -3450.145490 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.51031 -40.41313 -39.31776 -37.40163 -34.80038 -33.76234 -32.22090 -31.87082 -29.20543 -27.87935 -27.74047 -25.03979 -23.49631 -22.51551 -22.02021 -21.18701 -20.59417 -19.88474 -18.80088 -18.07846 -17.49448 -17.28330 -17.06751 -16.97443 -15.92543 -15.71127 -15.40951 -15.02754 -14.75143 -14.63053 -14.18923 -14.03234 -13.92869 -13.51172 -13.42869 -13.21502 -12.97957 -12.94890 -12.56501 -12.29866 -12.17808 -12.08236 -12.00471 -11.85048 -11.70402 -11.47709 -11.45085 -11.36393 -10.93418 -10.54109 -10.46812 -10.12766 -9.90816 -8.55503 -8.48972 -6.29798 -0.15791 0.50529 1.24884 1.38336 1.43277 1.54347 1.67356 1.69533 2.18864 2.72435 2.83199 2.96099 3.18120 3.42658 3.70143 3.76960 3.92861 4.06202 4.11634 4.19098 4.22882 4.25217 4.37774 4.45760 4.52575 4.60796 4.63666 4.64435 4.75345 4.79646 4.83127 4.95512 5.04884 5.09330 5.21308 5.25856 5.33490 5.34832 5.37627 5.44810 5.49979 5.55780 5.64040 6.06395 6.12916 6.87120 6.92631 8.56983 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.019062 B = 0.003024 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.529541 B = 9255.883402 C =10441.553896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.026 3.974 3 Si 0.995 3.005 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.601 4.601 8 H 0.099 0.901 9 S 0.066 5.934 10 C -0.066 4.066 11 C -0.176 4.176 12 C -0.056 4.056 13 C -0.161 4.161 14 C -0.035 4.035 15 C -0.175 4.175 16 C 0.496 3.504 17 O -0.521 6.521 18 O -0.346 6.346 19 C 0.071 3.929 20 C -0.081 4.081 21 H 0.097 0.903 22 C -0.090 4.090 23 C -0.165 4.165 24 H 0.125 0.875 25 C -0.154 4.154 26 C -0.169 4.169 27 H 0.122 0.878 28 C -0.092 4.092 29 H 0.277 0.723 30 H 0.126 0.874 31 H 0.157 0.843 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.783 -21.505 -1.382 21.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.180 4.180 3 Si 0.816 3.184 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.748 4.748 8 H 0.116 0.884 9 S 0.326 5.674 10 C -0.184 4.184 11 C -0.201 4.201 12 C -0.077 4.077 13 C -0.184 4.184 14 C -0.054 4.054 15 C -0.187 4.187 16 C 0.342 3.658 17 O -0.413 6.413 18 O -0.263 6.263 19 C -0.003 4.003 20 C -0.099 4.099 21 H 0.116 0.884 22 C -0.127 4.127 23 C -0.183 4.183 24 H 0.143 0.857 25 C -0.191 4.191 26 C -0.187 4.187 27 H 0.140 0.860 28 C -0.129 4.129 29 H 0.086 0.914 30 H 0.144 0.856 31 H 0.174 0.826 32 H 0.186 0.814 33 H 0.175 0.825 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.131 0.869 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.871 -21.109 -1.536 21.248 hybrid contribution 0.991 1.693 0.056 1.962 sum 2.863 -19.417 -1.481 19.682 Atomic orbital electron populations 1.70114 1.08085 1.29434 1.46255 1.26177 0.95867 1.03520 0.92481 0.85056 0.78093 0.75499 0.79798 1.18537 1.19945 1.18274 1.24188 0.97167 0.93873 1.59551 0.88363 1.84858 1.06513 0.95918 1.80159 1.22973 1.00260 0.96555 0.98591 1.21460 0.91787 1.01244 1.05563 1.21643 0.98780 0.93583 0.93712 1.21379 0.97259 0.95388 1.04332 1.21536 0.91273 0.99675 0.92904 1.18672 0.91452 0.91875 1.16665 1.21388 0.89733 0.80848 0.73810 1.90849 1.45079 1.57784 1.47557 1.86490 1.33369 1.23422 1.83055 1.23205 0.79801 0.95985 1.01269 1.22340 0.97514 0.90030 1.00025 0.88441 1.21930 0.94337 0.94871 1.01599 1.23238 1.02521 0.98487 0.94083 0.85724 1.23156 0.99229 1.03652 0.93085 1.23276 0.90460 0.98601 1.06355 0.86008 1.21995 1.00475 0.94578 0.95884 0.91375 0.85617 0.82581 0.81437 0.82455 0.92270 0.91794 0.89689 0.91580 0.86863 0.89639 0.92428 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.69 13.22 21.65 0.29 -54.40 16 2 C 0.03 1.44 5.49 84.87 0.47 1.91 16 3 Si 0.99 43.09 29.55 68.60 2.03 45.11 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 7 C -0.60 -34.51 9.00 67.96 0.61 -33.90 16 8 H 0.10 5.26 4.98 -2.91 -0.01 5.24 16 9 S 0.07 3.76 18.56 -56.49 -1.05 2.71 16 10 C -0.07 -3.09 6.15 23.05 0.14 -2.95 16 11 C -0.18 -7.14 9.22 22.40 0.21 -6.93 16 12 C -0.06 -1.65 10.02 22.30 0.22 -1.43 16 13 C -0.16 -4.06 10.02 22.27 0.22 -3.84 16 14 C -0.03 -1.03 9.61 22.53 0.22 -0.81 16 15 C -0.18 -7.07 5.89 -19.96 -0.12 -7.19 16 16 C 0.50 20.55 7.87 70.20 0.55 21.10 16 17 O -0.52 -25.79 13.57 19.71 0.27 -25.52 16 18 O -0.35 -11.26 9.42 -56.93 -0.54 -11.80 16 19 C 0.07 1.97 4.90 71.98 0.35 2.33 16 20 C -0.08 -1.61 3.17 -9.50 -0.03 -1.64 16 21 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 22 C -0.09 -1.52 6.07 31.67 0.19 -1.32 16 23 C -0.17 -2.38 6.94 -10.07 -0.07 -2.45 16 24 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 25 C -0.15 -2.17 10.07 30.59 0.31 -1.86 16 26 C -0.17 -2.57 6.94 -10.07 -0.07 -2.64 16 27 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 28 C -0.09 -1.74 6.02 31.67 0.19 -1.55 16 29 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.13 5.44 5.04 -2.91 -0.01 5.43 16 31 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 33 H 0.16 3.65 7.61 -2.91 -0.02 3.63 16 34 H 0.06 1.75 7.98 -2.39 -0.02 1.73 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.20 8.05 -2.38 -0.02 1.18 16 38 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.06 1.22 7.93 -2.39 -0.02 1.20 16 41 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -72.42 354.18 5.43 -66.99 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 1.04 Total: 20.06 kcal Atomic # 6 Polarization: -46.55 SS G_CDS: 3.40 Total: -43.16 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.29 Total: -54.40 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -0.27 Total: -37.32 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.05 Total: 2.71 kcal Total: -72.42 5.43 -66.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851413780.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.022 kcal (2) G-P(sol) polarization free energy of solvation -72.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds