Wall clock time and date at job start Fri Apr 10 2020 23:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09008 * 109.50047 * 60.35896 * 9 7 2 11 11 C 1.53116 * 109.50633 * 300.28045 * 9 7 2 12 12 C 1.53127 * 109.16202 * 182.40391 * 11 9 7 13 13 C 1.53038 * 109.27743 * 57.65342 * 12 11 9 14 14 N 1.46850 * 109.52454 * 300.82299 * 13 12 11 15 15 C 1.39086 * 111.00189 * 185.83997 * 14 13 12 16 16 C 1.36564 * 120.69579 * 63.95241 * 15 14 13 17 17 C 1.39669 * 121.75797 * 180.02562 * 16 15 14 18 18 C 1.35585 * 122.71121 * 359.95363 * 17 16 15 19 19 N 1.48067 * 119.95027 * 180.02562 * 18 17 16 20 20 O 1.21802 * 120.00255 * 0.02562 * 19 18 17 21 21 O 1.21808 * 120.00485 * 179.97438 * 19 18 17 22 22 C 1.40670 * 120.10138 * 0.02562 * 18 17 16 23 23 N 1.31074 * 138.74937 * 180.02562 * 22 18 17 24 24 O 1.21504 * 109.05265 * 179.33527 * 23 22 18 25 25 N 1.21517 * 116.27178 * 0.62817 * 24 23 22 26 26 C 1.30629 * 109.10297 * 359.46458 * 25 24 23 27 27 C 1.46842 * 111.19886 * 61.73895 * 14 13 12 28 28 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.52469 * 302.30911 * 11 9 7 30 30 H 1.08996 * 109.52149 * 62.50030 * 11 9 7 31 31 H 1.08994 * 109.50318 * 177.59839 * 12 11 9 32 32 H 1.08999 * 109.49792 * 297.67592 * 12 11 9 33 33 H 1.08996 * 109.46008 * 60.83529 * 13 12 11 34 34 H 1.08996 * 109.46333 * 180.80862 * 13 12 11 35 35 H 1.08008 * 119.12132 * 0.02562 * 16 15 14 36 36 H 1.07994 * 118.64388 * 179.97438 * 17 16 15 37 37 H 1.09004 * 109.46518 * 178.23974 * 27 14 13 38 38 H 1.09008 * 109.46263 * 58.27694 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6253 -2.5619 -0.8849 11 6 0.3706 -2.5754 1.2557 12 6 -0.3450 -3.9289 1.2846 13 6 0.6952 -5.0511 1.2576 14 7 1.5114 -4.9346 0.0424 15 6 2.3801 -6.0138 -0.0800 16 6 1.8987 -7.2811 -0.2451 17 6 2.7507 -8.3808 -0.3697 18 6 4.1015 -8.2685 -0.3368 19 7 4.9472 -9.4760 -0.4754 20 8 4.4293 -10.5690 -0.6194 21 8 6.1608 -9.3762 -0.4465 22 6 4.7007 -7.0067 -0.1711 23 7 5.9024 -6.4894 -0.0901 24 8 5.8077 -5.2857 0.0454 25 7 4.6794 -4.8363 0.0881 26 6 3.8242 -5.8153 -0.0405 27 6 2.2450 -3.6628 0.0154 28 1 -0.4850 0.8400 0.0004 29 1 0.9918 -2.4728 2.1455 30 1 -0.3673 -1.7737 1.2310 31 1 -0.9404 -4.0063 2.1942 32 1 -0.9964 -4.0146 0.4148 33 1 1.3370 -4.9725 2.1350 34 1 0.1885 -6.0161 1.2635 35 1 0.8305 -7.4371 -0.2802 36 1 2.3156 -9.3608 -0.4979 37 1 2.8640 -3.6195 -0.8807 38 1 2.8796 -3.5908 0.8988 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853761740.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:41:50 Heat of formation + Delta-G solvation = 129.847133 kcal Electronic energy + Delta-G solvation = -26781.866571 eV Core-core repulsion = 22825.778096 eV Total energy + Delta-G solvation = -3956.088475 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.07624 -43.23208 -41.39256 -39.08268 -37.68041 -36.44114 -35.67935 -34.73433 -33.93846 -31.99626 -31.44255 -27.81708 -27.31999 -26.69685 -26.13011 -24.76788 -23.36974 -22.32518 -20.90878 -20.65733 -20.33061 -19.90206 -19.49369 -18.89619 -18.62804 -18.60523 -17.63244 -16.74926 -16.34841 -15.86475 -15.42092 -15.01962 -14.82568 -14.51627 -14.39376 -14.20651 -13.97703 -13.90986 -13.52290 -13.16701 -13.05851 -12.89414 -12.75195 -12.71535 -12.62457 -12.30449 -12.29402 -11.98736 -11.90075 -11.58966 -11.48329 -11.15228 -11.05867 -10.73051 -10.44337 -9.30006 -8.15818 -6.28845 -1.82195 -0.48501 -0.28438 0.18344 0.47184 1.38833 1.39838 1.46841 1.61584 1.68148 1.85836 2.11432 2.34464 2.49383 3.02743 3.12723 3.29311 3.55194 3.70398 3.81879 3.98149 4.04639 4.18450 4.31087 4.36955 4.47554 4.57357 4.71617 4.77332 4.85855 4.94356 4.98958 5.18570 5.20131 5.39702 5.54161 5.57994 5.77695 5.91599 6.07875 6.30539 6.48166 6.80326 7.04978 7.39521 8.88376 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.021417 B = 0.003686 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.052150 B = 7594.148263 C = 8694.001991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.946 3.054 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.046 0.954 9 C 0.055 3.945 10 H 0.006 0.994 11 C -0.112 4.112 12 C -0.113 4.113 13 C 0.062 3.938 14 N -0.472 5.472 15 C 0.245 3.755 16 C -0.150 4.150 17 C 0.100 3.900 18 C -0.087 4.087 19 N 0.043 4.957 20 O -0.134 6.134 21 O -0.227 6.227 22 C 0.060 3.940 23 N -0.343 5.343 24 O 0.373 5.627 25 N -0.319 5.319 26 C -0.020 4.020 27 C 0.075 3.925 28 H 0.263 0.737 29 H 0.025 0.975 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.134 0.866 35 H 0.217 0.783 36 H 0.217 0.783 37 H 0.055 0.945 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 -16.685 2.185 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.176 4.176 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.199 1.199 7 C -0.579 4.579 8 H 0.065 0.935 9 C 0.037 3.963 10 H 0.024 0.976 11 C -0.151 4.151 12 C -0.151 4.151 13 C -0.060 4.060 14 N -0.182 5.182 15 C 0.138 3.862 16 C -0.176 4.176 17 C 0.077 3.923 18 C -0.176 4.176 19 N 0.556 4.444 20 O -0.357 6.357 21 O -0.425 6.425 22 C -0.097 4.097 23 N -0.067 5.067 24 O 0.138 5.862 25 N -0.037 5.037 26 C -0.178 4.178 27 C -0.051 4.051 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.152 0.848 35 H 0.233 0.767 36 H 0.233 0.767 37 H 0.074 0.926 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.552 -15.090 2.015 15.303 hybrid contribution 1.050 0.900 0.156 1.391 sum -0.502 -14.190 2.171 14.364 Atomic orbital electron populations 1.69961 1.06794 1.27322 1.50640 1.25553 0.95628 1.01839 0.94589 0.85795 0.78599 0.79686 0.78702 1.20076 1.20642 1.19864 1.21377 0.92861 0.92115 1.51572 0.93526 1.18597 0.92576 0.90386 0.94782 0.97564 1.21560 0.99324 0.97314 0.96877 1.21672 0.97189 0.93341 1.02888 1.22618 0.94704 1.02587 0.86120 1.58859 1.20990 1.01585 1.36776 1.19875 0.82566 0.93663 0.90137 1.20905 1.03679 0.86304 1.06675 1.21331 0.87403 1.03854 0.79695 1.19453 0.91567 0.80400 1.26223 1.43482 1.01472 1.02237 0.97256 1.94455 1.76521 1.13640 1.51119 1.94642 0.96500 1.93370 1.57975 1.22008 0.88268 0.95940 1.03512 1.75498 1.20539 0.92247 1.18456 1.85484 1.24155 1.16504 1.60104 1.75454 0.91605 1.22347 1.14247 1.24603 0.98312 0.87211 1.07718 1.22387 0.95523 0.87118 1.00113 0.92827 0.95631 0.91626 0.89226 0.91497 0.93276 0.84843 0.76673 0.76674 0.92606 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.45 11.34 21.45 0.24 -49.21 16 2 C 0.02 1.26 5.30 84.65 0.45 1.71 16 3 Si 0.95 42.37 29.54 68.60 2.03 44.39 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.54 -28.52 8.57 25.60 0.22 -28.30 16 8 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 9 C 0.06 2.54 2.27 -11.49 -0.03 2.51 16 10 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 11 C -0.11 -4.63 5.02 30.68 0.15 -4.48 16 12 C -0.11 -3.19 6.09 30.65 0.19 -3.00 16 13 C 0.06 1.36 5.32 86.33 0.46 1.82 16 14 N -0.47 -12.89 4.67 -690.86 -3.22 -16.12 16 15 C 0.24 5.52 5.57 39.56 0.22 5.74 16 16 C -0.15 -1.85 9.12 22.22 0.20 -1.64 16 17 C 0.10 1.25 9.40 22.00 0.21 1.46 16 18 C -0.09 -1.98 6.85 36.35 0.25 -1.73 16 19 N 0.04 1.17 4.46 -46.47 -0.21 0.96 16 20 O -0.13 -3.19 18.36 18.88 0.35 -2.85 16 21 O -0.23 -7.50 18.47 18.88 0.35 -7.15 16 22 C 0.06 1.68 7.19 42.59 0.31 1.99 16 23 N -0.34 -10.74 11.95 -57.38 -0.69 -11.42 16 24 O 0.37 11.47 11.67 139.25 1.63 13.10 16 25 N -0.32 -10.30 9.86 -55.27 -0.54 -10.85 16 26 C -0.02 -0.56 6.64 44.02 0.29 -0.27 16 27 C 0.07 2.81 3.27 86.33 0.28 3.09 16 28 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 29 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 3.15 6.14 -2.39 -0.01 3.14 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.13 1.58 7.16 -2.39 -0.02 1.56 16 35 H 0.22 0.80 7.60 -2.91 -0.02 0.78 16 36 H 0.22 0.86 7.47 -2.91 -0.02 0.84 16 37 H 0.06 2.26 7.18 -2.38 -0.02 2.25 16 38 H 0.04 1.68 7.11 -2.38 -0.02 1.66 16 Total: -1.00 -66.89 321.65 4.25 -62.63 By element: Atomic # 1 Polarization: -3.50 SS G_CDS: 1.12 Total: -2.38 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 3.20 Total: -21.12 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -4.42 Total: -86.63 kcal Atomic # 8 Polarization: 0.78 SS G_CDS: 2.32 Total: 3.10 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -66.89 4.25 -62.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853761740.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.481 kcal (2) G-P(sol) polarization free energy of solvation -66.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds