Wall clock time and date at job start Fri Apr 10 2020 23:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46504 * 119.99780 * 2 1 4 4 C 1.50705 * 109.46784 * 269.99332 * 3 2 1 5 5 H 1.08002 * 119.99972 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99923 * 180.02562 * 4 3 2 7 7 N 1.31522 * 119.99758 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00252 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46663 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47106 * 119.99809 * 8 6 4 11 11 H 1.48499 * 109.46941 * 239.99918 * 8 6 4 12 12 C 1.34773 * 119.99971 * 179.97438 * 2 1 3 13 13 O 1.21287 * 119.99989 * 180.02562 * 12 2 1 14 14 C 1.50698 * 119.99985 * 0.02562 * 12 2 1 15 15 N 1.46504 * 109.47181 * 179.97438 * 14 12 2 16 16 N 1.39876 * 125.46007 * 270.02764 * 15 14 12 17 17 C 1.30242 * 110.08214 * 179.97438 * 16 15 14 18 18 C 1.45926 * 107.78648 * 0.02562 * 17 16 15 19 19 C 1.39945 * 134.02618 * 179.97438 * 18 17 16 20 20 C 1.36468 * 119.63415 * 180.02562 * 19 18 17 21 21 C 1.38963 * 120.62721 * 359.93222 * 20 19 18 22 22 N 1.48004 * 119.59148 * 180.02562 * 21 20 19 23 23 O 1.21804 * 119.99800 * 180.02562 * 22 21 20 24 24 O 1.21800 * 120.00200 * 0.02562 * 22 21 20 25 25 C 1.36591 * 120.81457 * 0.03704 * 21 20 19 26 26 C 1.37031 * 125.46160 * 89.99772 * 15 14 12 27 27 H 1.08993 * 109.47214 * 270.00220 * 1 2 3 28 28 H 1.09006 * 109.46669 * 30.00383 * 1 2 3 29 29 H 1.08996 * 109.46658 * 150.00095 * 1 2 3 30 30 H 1.08992 * 109.47540 * 29.99441 * 3 2 1 31 31 H 1.08997 * 109.46720 * 149.99753 * 3 2 1 32 32 H 0.96997 * 119.99494 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.47182 * 60.00459 * 14 12 2 34 34 H 1.08994 * 109.47563 * 299.99797 * 14 12 2 35 35 H 1.08006 * 126.10211 * 180.25918 * 17 16 15 36 36 H 1.08001 * 120.18364 * 359.97438 * 19 18 17 37 37 H 1.07997 * 119.68138 * 179.97438 * 20 19 18 38 38 H 1.08004 * 120.07039 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4488 1.7037 -1.4209 5 1 2.0976 1.0960 -2.2417 6 6 3.1270 2.8773 -1.6729 7 7 3.5542 3.6176 -0.6732 8 14 3.4378 3.4169 -3.4341 9 1 2.8600 2.4167 -4.3673 10 1 2.8008 4.7379 -3.6668 11 1 4.9003 3.5245 -3.6679 12 6 2.1389 -1.1672 0.0005 13 8 3.3518 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 7 2.3374 -3.5858 0.0005 16 7 2.8651 -4.2023 -1.1388 17 6 3.6815 -5.1565 -0.7934 18 6 3.7206 -5.2037 0.6645 19 6 4.4000 -5.9993 1.5940 20 6 4.2149 -5.7848 2.9289 21 6 3.3597 -4.7837 3.3732 22 7 3.1763 -4.5707 4.8263 23 8 2.4281 -3.6955 5.2239 24 8 3.7735 -5.2704 5.6246 25 6 2.6860 -3.9939 2.4853 26 6 2.8540 -4.1901 1.1166 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3632 -0.8900 -0.5138 30 1 1.6085 2.0284 0.5137 31 1 3.1499 1.1384 0.5139 32 1 4.0316 4.4431 -0.8506 33 1 0.7591 -2.5302 -0.8898 34 1 0.7584 -2.5299 0.8902 35 1 4.2339 -5.7960 -1.4661 36 1 5.0666 -6.7793 1.2567 37 1 4.7385 -6.3986 3.6469 38 1 2.0240 -3.2196 2.8439 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000913584276.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:42:31 Heat of formation + Delta-G solvation = 42.431573 kcal Electronic energy + Delta-G solvation = -25942.911860 eV Core-core repulsion = 21983.032762 eV Total energy + Delta-G solvation = -3959.879098 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.41104 -42.58133 -40.68446 -38.59055 -37.75425 -36.75501 -35.04885 -34.61524 -32.34108 -31.85304 -30.20903 -28.36592 -27.61011 -27.27925 -24.96782 -24.19417 -23.27648 -22.33392 -20.65386 -20.01725 -19.78788 -18.79541 -18.69903 -18.43552 -18.21006 -17.80527 -17.06148 -16.62332 -16.29738 -15.95962 -15.86030 -15.39614 -15.02372 -14.55093 -14.44299 -14.07948 -13.90509 -13.56843 -13.41029 -13.39078 -13.19347 -12.92416 -12.85271 -12.67551 -12.59718 -12.35075 -12.32820 -12.28561 -12.07796 -11.75393 -11.68559 -10.85361 -10.71640 -10.35645 -9.56699 -9.28332 -8.29533 -6.44756 -1.42373 -0.10511 0.14048 0.20955 0.99567 1.27960 1.31948 1.34276 1.45839 1.56670 2.19405 2.29529 2.37379 3.00621 3.07588 3.22437 3.37745 3.45985 3.53785 3.68332 3.86756 3.93924 4.14003 4.31526 4.36840 4.45552 4.66139 4.71675 4.82198 4.88253 4.92656 5.06313 5.12630 5.22915 5.41423 5.44378 5.52029 5.72656 5.96862 6.33523 6.42903 6.55352 6.65584 7.15614 7.30277 8.78055 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.003365 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.755981 B = 8317.919467 C = 9044.707327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.603 5.603 3 C 0.260 3.740 4 C -0.544 4.544 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.267 1.267 11 H -0.283 1.283 12 C 0.476 3.524 13 O -0.589 6.589 14 C 0.127 3.873 15 N -0.389 5.389 16 N -0.257 5.257 17 C 0.091 3.909 18 C -0.146 4.146 19 C -0.004 4.004 20 C -0.119 4.119 21 C -0.004 4.004 22 N 0.028 4.972 23 O -0.204 6.204 24 O -0.139 6.139 25 C -0.078 4.078 26 C 0.112 3.888 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.028 0.972 31 H -0.007 1.007 32 H 0.268 0.732 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.253 0.747 36 H 0.203 0.797 37 H 0.180 0.820 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.810 -23.249 2.376 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.334 5.334 3 C 0.139 3.861 4 C -0.582 4.582 5 H 0.072 0.928 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.793 3.207 9 H -0.190 1.190 10 H -0.192 1.192 11 H -0.209 1.209 12 C 0.262 3.738 13 O -0.469 6.469 14 C 0.002 3.998 15 N -0.176 5.176 16 N -0.068 5.068 17 C -0.106 4.106 18 C -0.155 4.155 19 C -0.024 4.024 20 C -0.139 4.139 21 C -0.089 4.089 22 N 0.545 4.455 23 O -0.410 6.410 24 O -0.362 6.362 25 C -0.101 4.101 26 C -0.004 4.004 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.046 0.954 31 H 0.011 0.989 32 H 0.077 0.923 33 H 0.169 0.831 34 H 0.171 0.829 35 H 0.269 0.731 36 H 0.220 0.780 37 H 0.197 0.803 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.789 -22.301 0.717 22.821 hybrid contribution 0.531 1.101 0.498 1.320 sum -4.258 -21.201 1.215 21.658 Atomic orbital electron populations 1.22108 0.77125 1.04714 1.03294 1.48174 1.08778 1.05965 1.70495 1.18778 0.91009 0.80196 0.96148 1.21704 1.37006 1.06609 0.92906 0.92790 1.25882 0.94824 0.96417 1.02080 1.70061 1.38805 1.14855 1.33062 0.85349 0.77859 0.78528 0.78966 1.19046 1.19170 1.20872 1.21537 0.88249 0.86811 0.77159 1.90692 1.16453 1.87802 1.51960 1.21772 0.89052 0.79685 1.09287 1.47927 1.39691 1.28999 1.00948 1.76714 1.12373 1.08793 1.08948 1.26054 0.96219 0.95783 0.92587 1.20672 1.00802 0.98836 0.95195 1.20814 0.95595 0.97239 0.88800 1.20796 0.98053 0.96903 0.98169 1.20652 1.06331 1.03776 0.78189 1.43836 0.98475 0.98919 1.04244 1.94575 1.35107 1.27355 1.83925 1.94479 1.46039 1.43924 1.51786 1.19460 1.01125 1.00144 0.89414 1.18530 0.97545 0.95864 0.88487 0.90333 0.91035 0.88201 0.95380 0.98850 0.92332 0.83071 0.82851 0.73096 0.77960 0.80257 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.82 10.24 127.77 1.31 3.13 16 2 N -0.60 -24.47 2.86 -851.12 -2.43 -26.90 16 3 C 0.26 13.97 5.16 85.63 0.44 14.41 16 4 C -0.54 -31.29 9.39 25.60 0.24 -31.05 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.41 5.46 84.65 0.46 0.87 16 7 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 8 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 C 0.48 19.10 7.74 87.66 0.68 19.78 16 13 O -0.59 -30.74 16.01 -3.05 -0.05 -30.79 16 14 C 0.13 3.29 5.40 85.63 0.46 3.76 16 15 N -0.39 -11.00 3.14 -343.37 -1.08 -12.08 16 16 N -0.26 -6.98 12.40 -53.09 -0.66 -7.63 16 17 C 0.09 1.66 12.28 86.92 1.07 2.73 16 18 C -0.15 -2.86 6.37 -20.24 -0.13 -2.99 16 19 C 0.00 -0.05 10.07 22.27 0.22 0.17 16 20 C -0.12 -1.92 9.47 22.03 0.21 -1.72 16 21 C 0.00 -0.10 6.81 36.17 0.25 0.14 16 22 N 0.03 0.78 4.45 -46.98 -0.21 0.57 16 23 O -0.20 -6.39 18.39 18.88 0.35 -6.04 16 24 O -0.14 -3.68 18.41 18.89 0.35 -3.33 16 25 C -0.08 -2.02 9.46 22.14 0.21 -1.81 16 26 C 0.11 2.91 6.87 39.21 0.27 3.18 16 27 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.07 2.03 8.07 -2.38 -0.02 2.01 16 29 H 0.10 1.76 6.44 -2.39 -0.02 1.74 16 30 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 31 H -0.01 -0.42 7.42 -2.39 -0.02 -0.44 16 32 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 33 H 0.15 3.07 7.40 -2.38 -0.02 3.06 16 34 H 0.15 2.75 8.10 -2.39 -0.02 2.73 16 35 H 0.25 1.77 8.06 -2.91 -0.02 1.74 16 36 H 0.20 0.48 8.06 -2.91 -0.02 0.46 16 37 H 0.18 2.01 7.57 -2.91 -0.02 1.98 16 38 H 0.15 3.79 7.55 -2.91 -0.02 3.77 16 Total: -1.00 -87.01 345.53 5.38 -81.63 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: 1.11 Total: 3.15 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 5.69 Total: 10.60 kcal Atomic # 7 Polarization: -98.10 SS G_CDS: -4.09 Total: -102.19 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: 0.65 Total: -40.17 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -87.01 5.38 -81.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913584276.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.064 kcal (2) G-P(sol) polarization free energy of solvation -87.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds