Wall clock time and date at job start Fri Apr 10 2020 23:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99997 * 2 1 4 4 H 1.48507 * 109.47219 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47616 * 300.00227 * 3 2 1 6 6 H 1.48501 * 109.47263 * 60.00430 * 3 2 1 7 7 C 1.38810 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00065 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00171 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.91648 * 322.54929 * 10 9 7 12 12 C 1.55154 * 111.00473 * 198.64760 * 10 9 7 13 13 C 1.54322 * 102.94204 * 206.42028 * 12 10 9 14 14 N 1.47019 * 107.27223 * 22.19795 * 13 12 10 15 15 C 1.34775 * 125.65013 * 181.03860 * 14 13 12 16 16 O 1.21575 * 119.99794 * 180.02562 * 15 14 13 17 17 C 1.47705 * 120.00136 * 0.02562 * 15 14 13 18 18 N 1.31814 * 126.51559 * 359.68668 * 17 15 14 19 19 N 1.28467 * 110.07053 * 179.85651 * 18 17 15 20 20 H 0.96996 * 124.88424 * 180.20751 * 19 18 17 21 21 C 1.35033 * 110.23211 * 0.42204 * 19 18 17 22 22 C 1.35366 * 107.22856 * 359.74504 * 21 19 18 23 23 C 1.50699 * 127.24673 * 180.02562 * 22 21 19 24 24 F 1.39902 * 109.47394 * 359.97438 * 23 22 21 25 25 F 1.39907 * 109.46786 * 119.97978 * 23 22 21 26 26 F 1.39901 * 109.47386 * 239.97865 * 23 22 21 27 27 C 1.47426 * 108.70209 * 1.05519 * 14 13 12 28 28 H 0.97002 * 119.99767 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00055 * 359.97438 * 9 7 2 30 30 H 1.08999 * 110.71557 * 88.06123 * 12 10 9 31 31 H 1.08995 * 110.87338 * 324.85942 * 12 10 9 32 32 H 1.09001 * 109.88768 * 262.77536 * 13 12 10 33 33 H 1.09004 * 110.00812 * 141.67871 * 13 12 10 34 34 H 1.08005 * 126.38570 * 179.72323 * 21 19 18 35 35 H 1.08998 * 110.36718 * 94.71247 * 27 14 13 36 36 H 1.09005 * 110.36600 * 217.03808 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3966 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9526 -3.5897 -0.6197 12 6 1.1476 -4.8246 -0.4637 13 6 1.7843 -6.0520 0.2216 14 7 2.5592 -5.5581 1.3692 15 6 3.2829 -6.3188 2.2142 16 8 3.8864 -5.8004 3.1336 17 6 3.3429 -7.7822 2.0234 18 7 2.7381 -8.4756 1.0795 19 7 3.0091 -9.7248 1.2078 20 1 2.6785 -10.4268 0.6259 21 6 3.8168 -9.9205 2.2721 22 6 4.0555 -8.7071 2.8228 23 6 4.9024 -8.4050 4.0321 24 9 5.4354 -9.5957 4.5375 25 9 5.9442 -7.5448 3.6686 26 9 4.1138 -7.7939 5.0129 27 6 2.4132 -4.0929 1.4429 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 0.0002 30 1 1.1772 -4.9299 -1.5482 31 1 0.1237 -4.6787 -0.1196 32 1 2.4439 -6.5663 -0.4774 33 1 1.0056 -6.7328 0.5656 34 1 4.2004 -10.8684 2.6196 35 1 1.6091 -3.8258 2.1285 36 1 3.3501 -3.6337 1.7582 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968883896.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:43:12 Heat of formation + Delta-G solvation = -108.933155 kcal Electronic energy + Delta-G solvation = -26860.345671 eV Core-core repulsion = 22352.046166 eV Total energy + Delta-G solvation = -4508.299505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.02530 -48.57765 -48.50131 -43.99633 -40.88850 -38.69324 -35.97771 -33.78195 -33.43696 -32.39617 -31.09208 -29.20480 -27.20962 -26.37764 -25.01245 -23.44400 -22.49897 -21.67739 -20.73838 -19.78867 -19.39574 -19.22640 -19.11694 -18.18934 -17.78388 -17.53227 -16.88174 -16.57019 -16.18526 -15.54934 -15.41621 -15.37619 -15.17614 -14.93898 -14.92131 -14.69719 -14.69501 -14.51191 -14.25654 -13.81536 -13.76023 -13.48908 -13.14905 -12.90750 -12.63083 -12.36205 -12.12223 -12.05087 -11.76457 -11.60222 -11.39702 -11.01214 -10.83769 -10.66066 -9.72570 -9.08385 -7.97490 -5.27402 0.21402 0.60448 1.46661 1.48650 1.49213 1.58615 1.73327 2.06907 2.08531 2.55370 2.72373 3.02751 3.26457 3.36305 3.47933 3.64564 3.75836 3.87836 3.98306 4.07695 4.28295 4.36115 4.38725 4.55152 4.59232 4.75323 4.89358 5.01977 5.15879 5.20912 5.36946 5.52920 5.88186 6.24581 6.39312 6.52517 6.95051 7.32148 8.02658 8.27553 9.25402 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.022560 B = 0.003137 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.859847 B = 8923.746722 C = 9822.963443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.068 4.068 3 Si 0.969 3.031 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.295 1.295 7 C -0.247 4.247 8 H 0.074 0.926 9 N -0.722 5.722 10 C 0.167 3.833 11 H 0.064 0.936 12 C -0.128 4.128 13 C 0.121 3.879 14 N -0.599 5.599 15 C 0.591 3.409 16 O -0.564 6.564 17 C 0.020 3.980 18 N -0.240 5.240 19 N -0.348 5.348 20 H 0.478 0.522 21 C 0.100 3.900 22 C -0.291 4.291 23 C 0.547 3.453 24 F -0.169 7.169 25 F -0.185 7.185 26 F -0.185 7.185 27 C 0.094 3.906 28 H 0.253 0.747 29 H 0.379 0.621 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.252 0.748 35 H 0.051 0.949 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.160 -29.492 0.774 30.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.222 1.222 7 C -0.379 4.379 8 H 0.092 0.908 9 N -0.361 5.361 10 C 0.056 3.944 11 H 0.082 0.918 12 C -0.166 4.166 13 C -0.001 4.001 14 N -0.331 5.331 15 C 0.378 3.622 16 O -0.442 6.442 17 C -0.142 4.142 18 N -0.075 5.075 19 N -0.064 5.064 20 H 0.330 0.670 21 C -0.048 4.048 22 C -0.304 4.304 23 C 0.492 3.508 24 F -0.151 7.151 25 F -0.166 7.166 26 F -0.166 7.166 27 C -0.032 4.032 28 H 0.061 0.939 29 H 0.212 0.788 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.268 0.732 35 H 0.070 0.930 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.952 -28.975 0.355 29.583 hybrid contribution 0.461 1.151 0.991 1.588 sum 6.413 -27.824 1.346 28.585 Atomic orbital electron populations 1.69801 1.06447 1.26142 1.59037 1.25508 0.96356 1.00914 1.03266 0.85139 0.78241 0.80044 0.76719 1.19336 1.21635 1.22211 1.19636 0.91450 0.85158 1.41620 0.90783 1.42427 1.05550 1.00369 1.87781 1.21458 0.95352 0.85782 0.91817 0.91827 1.22871 0.99172 0.92599 1.02006 1.22157 0.95221 0.96184 0.86527 1.48358 1.47439 1.08041 1.29278 1.17004 0.79066 0.84577 0.81528 1.90835 1.46650 1.73747 1.32958 1.21334 1.02435 0.93568 0.96855 1.73755 1.20388 0.92069 1.21322 1.43528 1.34016 1.06129 1.22680 0.66981 1.23313 0.93481 0.99725 0.88255 1.20330 1.11336 0.96097 1.02620 1.17165 0.77683 0.73887 0.82109 1.93171 1.87192 1.46012 1.88690 1.93204 1.60138 1.71570 1.91698 1.93202 1.74483 1.83906 1.65057 1.23075 1.00197 0.78449 1.01501 0.93857 0.78795 0.87909 0.90606 0.89200 0.89549 0.73248 0.93025 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.24 13.06 21.65 0.28 -57.96 16 2 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 3 Si 0.97 46.41 29.55 68.60 2.03 48.44 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 7 C -0.25 -13.65 9.98 84.03 0.84 -12.81 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.72 -35.62 5.28 -316.38 -1.67 -37.29 16 10 C 0.17 6.47 3.69 46.38 0.17 6.64 16 11 H 0.06 2.50 8.13 -2.39 -0.02 2.48 16 12 C -0.13 -3.66 6.57 31.78 0.21 -3.45 16 13 C 0.12 3.05 5.54 86.73 0.48 3.53 16 14 N -0.60 -20.03 3.33 -815.34 -2.71 -22.74 16 15 C 0.59 20.74 7.86 86.75 0.68 21.42 16 16 O -0.56 -24.06 14.74 -3.95 -0.06 -24.12 16 17 C 0.02 0.51 6.98 42.45 0.30 0.80 16 18 N -0.24 -4.20 9.75 -48.18 -0.47 -4.67 16 19 N -0.35 -2.44 6.83 -57.51 -0.39 -2.84 16 20 H 0.48 -1.42 8.96 -220.00 -1.97 -3.39 16 21 C 0.10 0.82 11.48 83.54 0.96 1.78 16 22 C -0.29 -6.09 5.66 -19.72 -0.11 -6.20 16 23 C 0.55 13.91 2.85 71.24 0.20 14.11 16 24 F -0.17 -3.23 16.87 44.97 0.76 -2.47 16 25 F -0.18 -5.72 16.42 44.97 0.74 -4.99 16 26 F -0.19 -5.75 16.41 44.97 0.74 -5.02 16 27 C 0.09 3.73 6.60 86.86 0.57 4.31 16 28 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 29 H 0.38 19.74 7.71 -92.71 -0.72 19.03 16 30 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.08 2.23 8.00 -2.39 -0.02 2.21 16 32 H 0.09 1.94 7.67 -2.39 -0.02 1.92 16 33 H 0.09 1.91 7.76 -2.38 -0.02 1.89 16 34 H 0.25 -0.62 8.02 -2.91 -0.02 -0.64 16 35 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.05 2.20 8.04 -2.38 -0.02 2.18 16 Total: -1.00 -79.11 322.98 2.49 -76.62 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -1.52 Total: 10.31 kcal Atomic # 6 Polarization: 21.96 SS G_CDS: 4.77 Total: 26.72 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -4.96 Total: -125.50 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.06 Total: -24.12 kcal Atomic # 9 Polarization: -14.70 SS G_CDS: 2.24 Total: -12.47 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -79.11 2.49 -76.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968883896.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.317 kcal (2) G-P(sol) polarization free energy of solvation -79.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds