Wall clock time and date at job start Fri Apr 10 2020 23:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00384 * 2 1 4 4 H 1.48500 * 109.46804 * 274.98106 * 3 2 1 5 5 H 1.48496 * 109.47059 * 34.98324 * 3 2 1 6 6 H 1.48503 * 109.47146 * 154.98152 * 3 2 1 7 7 C 1.38813 * 119.99412 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99899 * 187.07043 * 7 2 1 9 9 N 1.36934 * 120.00251 * 7.07063 * 7 2 1 10 10 C 1.47015 * 125.64936 * 354.87902 * 9 7 2 11 11 C 1.54328 * 107.27292 * 178.89710 * 10 9 7 12 12 C 1.55154 * 102.94164 * 337.80964 * 11 10 9 13 13 H 1.08999 * 111.00534 * 153.62041 * 12 11 10 14 14 N 1.46507 * 110.99907 * 277.42786 * 12 11 10 15 15 C 1.34776 * 119.99598 * 204.99625 * 14 12 11 16 16 O 1.21628 * 120.00381 * 0.02562 * 15 14 12 17 17 C 1.47327 * 120.00097 * 179.97438 * 15 14 12 18 18 N 1.35760 * 126.23304 * 0.03115 * 17 15 14 19 19 C 1.30169 * 108.86652 * 179.97438 * 18 17 15 20 20 N 1.35849 * 109.00543 * 359.97438 * 19 18 17 21 21 H 0.96997 * 126.14112 * 180.02562 * 20 19 18 22 22 C 1.35384 * 107.72754 * 359.97438 * 20 19 18 23 23 C 1.50694 * 126.56472 * 180.02562 * 22 20 19 24 24 F 1.39900 * 109.47147 * 0.02709 * 23 22 20 25 25 F 1.39900 * 109.47163 * 120.02921 * 23 22 20 26 26 F 1.39902 * 109.47171 * 240.02731 * 23 22 20 27 27 C 1.47428 * 125.65007 * 174.83000 * 9 7 2 28 28 H 0.97008 * 119.99938 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.88312 * 59.47695 * 10 9 7 30 30 H 1.09003 * 109.88286 * 298.31280 * 10 9 7 31 31 H 1.09003 * 110.71905 * 219.44233 * 11 10 9 32 32 H 1.08999 * 110.72116 * 96.17395 * 11 10 9 33 33 H 0.96992 * 120.00180 * 25.00465 * 14 12 11 34 34 H 1.07999 * 125.49992 * 179.97438 * 19 18 17 35 35 H 1.08998 * 110.36951 * 85.32845 * 27 9 7 36 36 H 1.09005 * 110.36439 * 323.01423 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3925 2.1070 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4119 0.5921 7 6 2.0101 -1.2022 0.0005 8 1 3.0840 -1.2058 0.1157 9 7 1.3332 -2.3836 -0.1449 10 6 -0.1283 -2.5322 -0.2036 11 6 -0.4288 -4.0330 -0.4005 12 6 0.8918 -4.5750 -1.0083 13 1 1.0200 -5.6338 -0.7830 14 7 0.9405 -4.3389 -2.4534 15 6 1.6985 -5.1283 -3.2399 16 8 2.3418 -6.0370 -2.7502 17 6 1.7471 -4.8913 -4.6932 18 7 1.0837 -3.9195 -5.3704 19 6 1.3698 -4.0183 -6.6364 20 7 2.2273 -5.0565 -6.8164 21 1 2.6005 -5.3501 -7.6622 22 6 2.4685 -5.6071 -5.6033 23 6 3.3620 -6.7855 -5.3139 24 9 3.9265 -7.2470 -6.5079 25 9 4.3799 -6.3948 -4.4373 26 9 2.6092 -7.8088 -4.7279 27 6 1.9492 -3.7172 -0.2696 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5255 -1.9613 -1.0429 30 1 -0.5740 -2.1840 0.7282 31 1 -1.2583 -4.1725 -1.0938 32 1 -0.6389 -4.5129 0.5554 33 1 0.4273 -3.6145 -2.8439 34 1 0.9873 -3.3783 -7.4176 35 1 2.1544 -4.1341 0.7164 36 1 2.8665 -3.6581 -0.8556 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014726235.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:43:31 Heat of formation + Delta-G solvation = -93.964988 kcal Electronic energy + Delta-G solvation = -27335.427867 eV Core-core repulsion = 22827.777430 eV Total energy + Delta-G solvation = -4507.650437 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.27505 -47.87938 -47.63069 -42.65921 -39.29676 -37.12706 -33.85462 -33.22954 -31.71325 -31.13390 -29.13511 -27.39367 -26.16096 -24.49641 -23.29541 -22.30739 -20.55583 -20.05183 -19.81622 -19.52482 -18.60728 -18.38705 -17.28403 -16.80010 -16.02126 -15.91426 -15.76092 -14.83512 -14.63533 -14.53581 -14.50339 -14.29083 -14.11497 -13.88054 -13.81688 -13.80410 -13.66984 -13.14668 -12.74221 -12.37507 -11.87099 -11.77166 -10.90628 -10.87766 -10.80366 -10.69582 -10.64355 -10.34662 -10.07950 -9.90657 -9.83501 -9.64462 -9.32511 -8.66932 -8.44999 -6.76251 -5.68123 -2.99055 0.86271 1.93675 2.11363 2.66643 3.33926 3.43310 3.47150 3.48977 3.50580 3.52773 3.91688 4.16698 4.23216 4.54807 4.62427 4.91365 5.23935 5.36827 5.50371 5.52906 5.77395 5.84473 5.89838 6.25510 6.42537 6.54086 6.56428 6.60083 6.74943 7.04643 7.23712 7.58447 7.63493 7.85119 7.92535 8.30031 8.47788 9.26895 9.87131 10.53453 11.44279 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.017759 B = 0.003807 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.290543 B = 7353.956654 C = 7804.608603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.603 5.603 10 C 0.174 3.826 11 C -0.153 4.153 12 C 0.126 3.874 13 H 0.093 0.907 14 N -0.679 5.679 15 C 0.588 3.412 16 O -0.535 6.535 17 C 0.036 3.964 18 N -0.453 5.453 19 C 0.229 3.771 20 N -0.543 5.543 21 H 0.431 0.569 22 C -0.065 4.065 23 C 0.555 3.445 24 F -0.186 7.186 25 F -0.152 7.152 26 F -0.154 7.154 27 C 0.125 3.875 28 H 0.251 0.749 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.413 0.587 34 H 0.230 0.770 35 H 0.029 0.971 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.655 -12.714 -16.655 21.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.050 3.950 11 C -0.192 4.192 12 C 0.021 3.979 13 H 0.111 0.889 14 N -0.328 5.328 15 C 0.371 3.629 16 O -0.413 6.413 17 C -0.098 4.098 18 N -0.172 5.172 19 C -0.056 4.056 20 N -0.146 5.146 21 H 0.271 0.729 22 C -0.186 4.186 23 C 0.499 3.501 24 F -0.168 7.168 25 F -0.133 7.133 26 F -0.135 7.135 27 C -0.002 4.002 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.249 0.751 34 H 0.246 0.754 35 H 0.047 0.953 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.526 -12.551 -15.817 20.249 hybrid contribution 1.010 0.597 -1.128 1.627 sum 2.536 -11.955 -16.944 20.892 Atomic orbital electron populations 1.69968 1.04824 1.24896 1.57171 1.24772 0.95671 0.97491 1.02364 0.86144 0.78727 0.83790 0.77422 1.21737 1.21835 1.20716 1.19054 0.91102 0.82567 1.42527 0.90567 1.44471 1.01498 1.00926 1.86137 1.21190 0.84655 0.88165 1.01032 1.23224 0.95497 1.00379 1.00083 1.22234 0.97605 0.99555 0.78483 0.88865 1.45612 1.46402 1.33100 1.07701 1.16807 0.80335 0.82518 0.83227 1.90845 1.44058 1.32021 1.74344 1.20802 0.98902 0.95051 0.95054 1.70899 1.22614 1.20439 1.03250 1.25577 0.92964 0.90988 0.96117 1.42921 1.37119 1.26052 1.08505 0.72864 1.20708 1.07930 1.01849 0.88106 1.16820 0.78232 0.80749 0.74338 1.93173 1.86346 1.90166 1.47117 1.93305 1.60040 1.90689 1.69224 1.93284 1.75835 1.60162 1.84203 1.21950 0.94897 0.86897 0.96438 0.93858 0.93344 0.93923 0.91487 0.90827 0.75131 0.75386 0.95308 0.93845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.87 10.36 55.49 0.57 -26.29 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 22.33 29.56 -169.99 -5.02 17.31 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.22 -6.33 10.27 -15.06 -0.15 -6.48 16 8 H 0.08 2.12 7.84 -52.48 -0.41 1.71 16 9 N -0.60 -15.44 3.39 -170.08 -0.58 -16.02 16 10 C 0.17 4.13 5.37 -3.07 -0.02 4.12 16 11 C -0.15 -2.78 6.55 -24.90 -0.16 -2.94 16 12 C 0.13 2.35 3.43 -65.78 -0.23 2.12 16 13 H 0.09 1.64 7.54 -51.93 -0.39 1.25 16 14 N -0.68 -12.26 5.18 -52.83 -0.27 -12.54 16 15 C 0.59 10.48 7.81 -12.56 -0.10 10.39 16 16 O -0.54 -10.45 13.56 5.25 0.07 -10.37 16 17 C 0.04 0.54 6.98 -83.09 -0.58 -0.04 16 18 N -0.45 -6.07 11.01 -11.03 -0.12 -6.20 16 19 C 0.23 1.89 13.04 -89.91 -1.17 0.71 16 20 N -0.54 -4.23 5.98 -10.11 -0.06 -4.29 16 21 H 0.43 1.67 8.77 -40.82 -0.36 1.31 16 22 C -0.07 -0.81 6.50 -81.68 -0.53 -1.34 16 23 C 0.55 7.13 2.81 36.00 0.10 7.23 16 24 F -0.19 -1.91 17.03 2.25 0.04 -1.88 16 25 F -0.15 -2.29 16.18 2.25 0.04 -2.25 16 26 F -0.15 -2.19 16.17 2.25 0.04 -2.16 16 27 C 0.13 2.73 6.93 -2.53 -0.02 2.72 16 28 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.05 1.26 7.30 -51.93 -0.38 0.88 16 30 H 0.04 1.12 7.61 -51.93 -0.40 0.73 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.41 7.53 8.38 -40.82 -0.34 7.19 16 34 H 0.23 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 321.27 15.07 4.84 4.84 Total: -1.00 -34.27 321.27 -6.94 -41.21 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -3.53 Total: 2.44 kcal Atomic # 6 Polarization: 19.15 SS G_CDS: -2.95 Total: 16.19 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: -0.46 Total: -65.33 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.07 Total: -10.37 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 0.11 Total: -6.29 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.27 -6.94 -41.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014726235.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.754 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds