Wall clock time and date at job start Fri Apr 10 2020 23:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00384 * 2 1 4 4 H 1.48500 * 109.46804 * 274.98106 * 3 2 1 5 5 H 1.48496 * 109.47059 * 34.98324 * 3 2 1 6 6 H 1.48503 * 109.47146 * 154.98152 * 3 2 1 7 7 C 1.38813 * 119.99412 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99899 * 187.07043 * 7 2 1 9 9 N 1.36934 * 120.00251 * 7.07063 * 7 2 1 10 10 C 1.47015 * 125.64936 * 354.87902 * 9 7 2 11 11 C 1.54328 * 107.27292 * 178.89710 * 10 9 7 12 12 C 1.55154 * 102.94164 * 337.80964 * 11 10 9 13 13 H 1.08999 * 111.00534 * 153.62041 * 12 11 10 14 14 N 1.46507 * 110.99907 * 277.42786 * 12 11 10 15 15 C 1.34776 * 119.99598 * 204.99625 * 14 12 11 16 16 O 1.21628 * 120.00381 * 0.02562 * 15 14 12 17 17 C 1.47327 * 120.00097 * 179.97438 * 15 14 12 18 18 N 1.35760 * 126.23304 * 0.03115 * 17 15 14 19 19 C 1.30169 * 108.86652 * 179.97438 * 18 17 15 20 20 N 1.35849 * 109.00543 * 359.97438 * 19 18 17 21 21 H 0.96997 * 126.14112 * 180.02562 * 20 19 18 22 22 C 1.35384 * 107.72754 * 359.97438 * 20 19 18 23 23 C 1.50694 * 126.56472 * 180.02562 * 22 20 19 24 24 F 1.39900 * 109.47147 * 0.02709 * 23 22 20 25 25 F 1.39900 * 109.47163 * 120.02921 * 23 22 20 26 26 F 1.39902 * 109.47171 * 240.02731 * 23 22 20 27 27 C 1.47428 * 125.65007 * 174.83000 * 9 7 2 28 28 H 0.97008 * 119.99938 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.88312 * 59.47695 * 10 9 7 30 30 H 1.09003 * 109.88286 * 298.31280 * 10 9 7 31 31 H 1.09003 * 110.71905 * 219.44233 * 11 10 9 32 32 H 1.08999 * 110.72116 * 96.17395 * 11 10 9 33 33 H 0.96992 * 120.00180 * 25.00465 * 14 12 11 34 34 H 1.07999 * 125.49992 * 179.97438 * 19 18 17 35 35 H 1.08998 * 110.36951 * 85.32845 * 27 9 7 36 36 H 1.09005 * 110.36439 * 323.01423 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3925 2.1070 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4119 0.5921 7 6 2.0101 -1.2022 0.0005 8 1 3.0840 -1.2058 0.1157 9 7 1.3332 -2.3836 -0.1449 10 6 -0.1283 -2.5322 -0.2036 11 6 -0.4288 -4.0330 -0.4005 12 6 0.8918 -4.5750 -1.0083 13 1 1.0200 -5.6338 -0.7830 14 7 0.9405 -4.3389 -2.4534 15 6 1.6985 -5.1283 -3.2399 16 8 2.3418 -6.0370 -2.7502 17 6 1.7471 -4.8913 -4.6932 18 7 1.0837 -3.9195 -5.3704 19 6 1.3698 -4.0183 -6.6364 20 7 2.2273 -5.0565 -6.8164 21 1 2.6005 -5.3501 -7.6622 22 6 2.4685 -5.6071 -5.6033 23 6 3.3620 -6.7855 -5.3139 24 9 3.9265 -7.2470 -6.5079 25 9 4.3799 -6.3948 -4.4373 26 9 2.6092 -7.8088 -4.7279 27 6 1.9492 -3.7172 -0.2696 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5255 -1.9613 -1.0429 30 1 -0.5740 -2.1840 0.7282 31 1 -1.2583 -4.1725 -1.0938 32 1 -0.6389 -4.5129 0.5554 33 1 0.4273 -3.6145 -2.8439 34 1 0.9873 -3.3783 -7.4176 35 1 2.1544 -4.1341 0.7164 36 1 2.8665 -3.6581 -0.8556 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014726235.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:43:30 Heat of formation + Delta-G solvation = -118.282292 kcal Electronic energy + Delta-G solvation = -27336.482344 eV Core-core repulsion = 22827.777430 eV Total energy + Delta-G solvation = -4508.704914 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.28343 -48.84873 -48.71899 -43.51286 -40.72780 -38.79210 -35.45107 -34.33470 -33.42582 -32.13442 -30.96771 -29.07634 -27.29816 -26.38948 -24.47928 -23.13508 -22.02539 -21.64283 -21.22980 -20.61425 -19.64110 -19.42008 -18.87284 -18.23504 -17.37947 -17.04524 -16.75278 -16.64432 -15.83832 -15.76185 -15.60220 -15.53981 -15.38968 -15.15504 -15.06390 -14.89683 -14.89283 -14.75245 -13.99298 -13.82549 -13.71886 -13.56137 -12.86348 -12.81153 -12.28833 -12.08552 -12.00181 -11.83002 -11.72006 -11.57676 -11.52991 -11.22872 -10.67627 -10.30325 -10.00504 -8.83439 -7.83709 -5.16546 -0.13009 1.03794 1.24640 1.46612 1.47849 1.56829 1.80637 2.12117 2.26692 2.51127 2.59055 3.00730 3.19687 3.22159 3.35266 3.69916 3.77206 3.86829 4.01059 4.09554 4.34054 4.41322 4.69964 4.75626 4.86875 4.92452 5.00153 5.05665 5.46562 5.53935 5.69225 5.79186 6.01321 6.22442 6.35982 6.60523 7.10752 7.13984 7.79499 8.44422 9.26915 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.017759 B = 0.003807 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.290543 B = 7353.956654 C = 7804.608603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.057 4.057 3 Si 0.973 3.027 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.621 5.621 10 C 0.183 3.817 11 C -0.133 4.133 12 C 0.139 3.861 13 H 0.110 0.890 14 N -0.683 5.683 15 C 0.583 3.417 16 O -0.560 6.560 17 C 0.002 3.998 18 N -0.496 5.496 19 C 0.258 3.742 20 N -0.520 5.520 21 H 0.452 0.548 22 C -0.061 4.061 23 C 0.554 3.446 24 F -0.169 7.169 25 F -0.169 7.169 26 F -0.164 7.164 27 C 0.123 3.877 28 H 0.248 0.752 29 H 0.020 0.980 30 H 0.010 0.990 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.411 0.589 34 H 0.284 0.716 35 H 0.037 0.963 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.723 -13.001 -18.865 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.250 4.250 3 Si 0.801 3.199 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.347 5.347 10 C 0.059 3.941 11 C -0.171 4.171 12 C 0.033 3.967 13 H 0.128 0.872 14 N -0.331 5.331 15 C 0.369 3.631 16 O -0.439 6.439 17 C -0.132 4.132 18 N -0.215 5.215 19 C -0.027 4.027 20 N -0.124 5.124 21 H 0.297 0.703 22 C -0.184 4.184 23 C 0.499 3.501 24 F -0.150 7.150 25 F -0.150 7.150 26 F -0.146 7.146 27 C -0.003 4.003 28 H 0.057 0.943 29 H 0.038 0.962 30 H 0.028 0.972 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.246 0.754 34 H 0.300 0.700 35 H 0.054 0.946 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.616 -12.872 -18.069 22.244 hybrid contribution 1.029 0.670 -0.529 1.337 sum 2.645 -12.202 -18.598 22.400 Atomic orbital electron populations 1.70164 1.05988 1.25236 1.57853 1.25529 0.96567 1.00487 1.02448 0.85149 0.77768 0.79671 0.77283 1.21400 1.21840 1.19851 1.19345 0.91317 0.84065 1.42523 0.90980 1.44698 1.02488 1.01570 1.85980 1.20962 0.83492 0.91581 0.98109 1.23083 0.96061 0.96110 1.01875 1.22085 0.96236 0.99556 0.78803 0.87239 1.45613 1.46790 1.33306 1.07411 1.17232 0.79405 0.81819 0.84644 1.90814 1.44828 1.32906 1.75308 1.20453 1.01449 0.97239 0.94017 1.70846 1.24126 1.21016 1.05506 1.26625 0.90574 0.89976 0.95540 1.42897 1.36331 1.25212 1.07996 0.70318 1.20510 1.07234 1.01352 0.89351 1.16856 0.77974 0.80836 0.74475 1.93203 1.86071 1.89989 1.45778 1.93268 1.60818 1.90863 1.70028 1.93258 1.76077 1.60689 1.84544 1.22065 0.95189 0.86061 0.97020 0.94304 0.96210 0.97217 0.89071 0.88635 0.75352 0.70047 0.94550 0.95515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.30 10.36 21.65 0.22 -56.08 16 2 C -0.06 -3.26 5.48 84.86 0.46 -2.79 16 3 Si 0.97 46.39 29.56 68.60 2.03 48.42 16 4 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.24 -14.04 10.27 84.03 0.86 -13.17 16 8 H 0.07 4.09 7.84 -2.91 -0.02 4.07 16 9 N -0.62 -32.45 3.39 -692.00 -2.35 -34.80 16 10 C 0.18 8.88 5.37 86.73 0.47 9.34 16 11 C -0.13 -4.70 6.55 31.78 0.21 -4.49 16 12 C 0.14 5.08 3.43 46.38 0.16 5.24 16 13 H 0.11 3.72 7.54 -2.39 -0.02 3.70 16 14 N -0.68 -24.67 5.18 -439.30 -2.28 -26.95 16 15 C 0.58 20.87 7.81 86.63 0.68 21.54 16 16 O -0.56 -21.99 13.56 -4.12 -0.06 -22.04 16 17 C 0.00 0.05 6.98 40.50 0.28 0.33 16 18 N -0.50 -12.44 11.01 -188.81 -2.08 -14.52 16 19 C 0.26 3.31 13.04 180.10 2.35 5.66 16 20 N -0.52 -6.38 5.98 -185.91 -1.11 -7.49 16 21 H 0.45 1.66 8.77 -92.71 -0.81 0.84 16 22 C -0.06 -1.42 6.50 41.58 0.27 -1.15 16 23 C 0.55 13.71 2.81 71.23 0.20 13.91 16 24 F -0.17 -3.14 17.03 44.97 0.77 -2.37 16 25 F -0.17 -5.07 16.18 44.97 0.73 -4.35 16 26 F -0.16 -4.62 16.17 44.97 0.73 -3.90 16 27 C 0.12 5.43 6.93 86.85 0.60 6.03 16 28 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 29 H 0.02 1.06 7.30 -2.39 -0.02 1.04 16 30 H 0.01 0.52 7.61 -2.39 -0.02 0.50 16 31 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.41 15.13 8.38 -92.71 -0.78 14.35 16 34 H 0.28 0.11 8.06 -2.91 -0.02 0.09 16 35 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -77.38 321.27 2.72 -74.66 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -0.42 Total: 8.96 kcal Atomic # 6 Polarization: 33.92 SS G_CDS: 6.54 Total: 40.46 kcal Atomic # 7 Polarization: -132.25 SS G_CDS: -7.59 Total: -139.84 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.06 Total: -22.04 kcal Atomic # 9 Polarization: -12.84 SS G_CDS: 2.22 Total: -10.61 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -77.38 2.72 -74.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014726235.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.624 kcal (2) G-P(sol) polarization free energy of solvation -77.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds