Wall clock time and date at job start Fri Apr 10 2020 23:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86793 * 120.00151 * 2 1 4 4 H 1.48502 * 109.47450 * 271.39012 * 3 2 1 5 5 H 1.48505 * 109.47285 * 31.38964 * 3 2 1 6 6 H 1.48504 * 109.47428 * 151.38670 * 3 2 1 7 7 C 1.38952 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00016 * 345.56362 * 7 2 1 9 9 N 1.37101 * 119.99865 * 165.55258 * 7 2 1 10 10 C 1.46502 * 120.00238 * 318.74697 * 9 7 2 11 11 C 1.52999 * 109.46757 * 269.99527 * 10 9 7 12 12 C 1.50702 * 109.47219 * 180.02562 * 11 10 9 13 13 O 1.20832 * 119.99677 * 359.97438 * 12 11 10 14 14 O 1.34219 * 120.00130 * 179.97438 * 12 11 10 15 15 C 1.34777 * 119.99596 * 138.73916 * 9 7 2 16 16 O 1.21292 * 119.99956 * 184.79552 * 15 9 7 17 17 C 1.50702 * 120.00132 * 4.79846 * 15 9 7 18 18 N 1.46899 * 109.47035 * 174.49425 * 17 15 9 19 19 C 1.47908 * 111.00512 * 303.77778 * 18 17 15 20 20 C 1.54571 * 102.63760 * 149.14879 * 19 18 17 21 21 C 1.51569 * 102.85461 * 334.55748 * 20 19 18 22 22 C 1.37928 * 131.55564 * 196.05169 * 21 20 19 23 23 C 1.38304 * 120.07634 * 179.31406 * 22 21 20 24 24 C 1.38307 * 119.88704 * 0.02562 * 23 22 21 25 25 C 1.37908 * 120.26159 * 0.14176 * 24 23 22 26 26 C 1.38960 * 107.96341 * 15.72633 * 21 20 19 27 27 H 0.96997 * 119.99657 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.46971 * 29.99426 * 10 9 7 29 29 H 1.09001 * 109.47155 * 149.99790 * 10 9 7 30 30 H 1.09008 * 109.47289 * 300.00262 * 11 10 9 31 31 H 1.08995 * 109.47303 * 59.99856 * 11 10 9 32 32 H 0.96702 * 117.00283 * 180.02562 * 14 12 11 33 33 H 1.08996 * 109.47137 * 54.49691 * 17 15 9 34 34 H 1.08996 * 109.46930 * 294.50011 * 17 15 9 35 35 H 1.08998 * 110.77928 * 267.47485 * 19 18 17 36 36 H 1.09007 * 110.77894 * 30.71563 * 19 18 17 37 37 H 1.08992 * 110.78044 * 216.19111 * 20 19 18 38 38 H 1.09007 * 110.68343 * 92.87674 * 20 19 18 39 39 H 1.07994 * 119.96480 * 359.33708 * 22 21 20 40 40 H 1.07999 * 120.05691 * 180.02562 * 23 22 21 41 41 H 1.07999 * 119.86968 * 180.16547 * 24 23 22 42 42 H 1.07997 * 119.89951 * 179.72477 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4663 2.0634 -1.3996 5 1 1.4606 2.6440 0.7293 6 1 3.5601 1.4318 0.6705 7 6 2.0089 -1.2034 0.0005 8 1 1.4944 -2.1238 0.2341 9 7 3.3474 -1.2223 -0.2957 10 6 3.8687 -0.3909 -1.3834 11 6 3.8290 -1.1809 -2.6931 12 6 4.3659 -0.3260 -3.8120 13 8 4.7413 0.8000 -3.5852 14 8 4.4270 -0.8152 -5.0604 15 6 4.1835 -2.0057 0.4140 16 8 5.3783 -1.9579 0.2107 17 6 3.6340 -2.9410 1.4600 18 7 4.7216 -3.7717 1.9940 19 6 5.4087 -4.5066 0.9098 20 6 6.8548 -4.6224 1.4434 21 6 6.9621 -3.4401 2.3858 22 6 8.0551 -2.8161 2.9501 23 6 7.8777 -1.7262 3.7828 24 6 6.6020 -1.2631 4.0494 25 6 5.5057 -1.8856 3.4905 26 6 5.6760 -2.9864 2.6524 27 1 -0.4849 0.8400 0.0004 28 1 3.2564 0.5055 -1.4811 29 1 4.8973 -0.1060 -1.1620 30 1 4.4414 -2.0774 -2.5954 31 1 2.8005 -1.4659 -2.9145 32 1 4.7792 -0.2296 -5.7446 33 1 2.8743 -3.5813 1.0119 34 1 3.1893 -2.3609 2.2685 35 1 4.9670 -5.4933 0.7711 36 1 5.3817 -3.9383 -0.0200 37 1 7.5752 -4.5345 0.6303 38 1 6.9922 -5.5596 1.9828 39 1 9.0507 -3.1788 2.7411 40 1 8.7338 -1.2376 4.2241 41 1 6.4640 -0.4103 4.6975 42 1 4.5120 -1.5218 3.7062 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608185450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:43:20 Heat of formation + Delta-G solvation = -86.019786 kcal Electronic energy + Delta-G solvation = -27600.156890 eV Core-core repulsion = 23738.248066 eV Total energy + Delta-G solvation = -3861.908823 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.11699 -41.38696 -40.20373 -37.75618 -37.19898 -36.65035 -34.27290 -33.78575 -32.58492 -30.80048 -29.74639 -27.85498 -26.99750 -25.51749 -23.84466 -22.51353 -22.15548 -21.93682 -20.89734 -19.38881 -18.79311 -18.27381 -18.01001 -17.41321 -17.17513 -16.89782 -16.70491 -16.36534 -16.18829 -15.83886 -15.43641 -14.94977 -14.82691 -14.56684 -14.34223 -14.22728 -13.94180 -13.70144 -13.57077 -13.29763 -13.00681 -12.91738 -12.81092 -12.64779 -12.52214 -12.39180 -12.15602 -12.12608 -11.85833 -11.73854 -11.68309 -11.40991 -11.02145 -10.41458 -9.82106 -9.62460 -8.56691 -8.53883 -6.25209 0.55643 0.56024 1.08354 1.12942 1.25543 1.33745 1.69927 1.93930 2.09662 2.63465 2.73637 2.87978 3.14554 3.69913 3.74580 3.78533 3.80709 4.09625 4.16709 4.20973 4.27051 4.33689 4.44856 4.49942 4.52144 4.59629 4.66272 4.69210 4.72497 4.80299 4.85505 4.99786 5.10945 5.18270 5.36599 5.45336 5.49667 5.61325 5.68311 5.83420 5.96982 6.06819 6.15860 6.35628 6.87770 6.90509 7.29867 7.65387 8.56686 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012023 B = 0.005211 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.259505 B = 5371.999424 C = 6243.015605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.044 3.956 3 Si 0.913 3.087 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.277 1.277 7 C -0.337 4.337 8 H 0.103 0.897 9 N -0.472 5.472 10 C 0.109 3.891 11 C -0.115 4.115 12 C 0.494 3.506 13 O -0.554 6.554 14 O -0.503 6.503 15 C 0.461 3.539 16 O -0.589 6.589 17 C 0.052 3.948 18 N -0.462 5.462 19 C 0.035 3.965 20 C -0.069 4.069 21 C -0.143 4.143 22 C -0.094 4.094 23 C -0.153 4.153 24 C -0.109 4.109 25 C -0.164 4.164 26 C 0.099 3.901 27 H 0.280 0.720 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.429 0.571 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.141 0.859 40 H 0.147 0.853 41 H 0.138 0.862 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.587 -6.774 -0.535 12.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.161 4.161 3 Si 0.742 3.258 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.464 4.464 8 H 0.120 0.880 9 N -0.194 5.194 10 C -0.014 4.014 11 C -0.153 4.153 12 C 0.338 3.662 13 O -0.445 6.445 14 O -0.317 6.317 15 C 0.250 3.750 16 O -0.474 6.474 17 C -0.077 4.077 18 N -0.175 5.175 19 C -0.090 4.090 20 C -0.107 4.107 21 C -0.146 4.146 22 C -0.112 4.112 23 C -0.172 4.172 24 C -0.127 4.127 25 C -0.185 4.185 26 C 0.001 3.999 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.290 0.710 33 H 0.135 0.865 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.156 0.844 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.611 -7.011 0.019 12.718 hybrid contribution 0.155 2.267 -0.974 2.473 sum 10.766 -4.744 -0.955 11.804 Atomic orbital electron populations 1.69707 1.06749 1.28932 1.47254 1.25656 0.95406 0.99951 0.95087 0.86394 0.79182 0.82043 0.78190 1.19875 1.21027 1.20206 1.19050 0.82274 0.95472 1.49646 0.87959 1.43830 1.07779 1.40146 1.27619 1.21337 0.99325 0.93743 0.87007 1.21560 1.04998 0.99188 0.89601 1.23363 0.73479 0.85485 0.83874 1.90708 1.47103 1.22118 1.84617 1.84496 1.78091 1.50529 1.18581 1.21755 0.86012 0.83933 0.83298 1.90595 1.15725 1.70913 1.70164 1.22122 0.94373 0.94611 0.96639 1.61090 1.09914 1.22451 1.24080 1.23472 0.93311 0.98934 0.93282 1.21201 0.96225 0.95992 0.97232 1.20787 0.92902 0.99734 1.01184 1.20670 0.98142 0.95692 0.96715 1.21248 0.97367 0.97942 1.00608 1.21091 0.92405 0.99650 0.99556 1.20645 0.99723 0.96557 1.01535 1.19716 0.92042 0.92392 0.95712 0.90983 0.92399 0.91796 0.86431 0.86013 0.70952 0.86520 0.88212 0.87403 0.91947 0.89786 0.88215 0.84121 0.83500 0.84418 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.03 13.96 21.66 0.30 -46.72 16 2 C 0.04 2.24 5.40 84.93 0.46 2.70 16 3 Si 0.91 43.02 24.82 68.60 1.70 44.73 16 4 H -0.27 -12.82 6.62 99.48 0.66 -12.17 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 7 C -0.34 -16.13 9.10 84.04 0.77 -15.37 16 8 H 0.10 5.00 7.21 -2.91 -0.02 4.98 16 9 N -0.47 -20.95 2.15 -635.53 -1.37 -22.31 16 10 C 0.11 4.73 3.47 86.38 0.30 5.03 16 11 C -0.11 -3.98 6.13 29.85 0.18 -3.80 16 12 C 0.49 16.10 8.33 71.24 0.59 16.70 16 13 O -0.55 -21.89 16.74 21.95 0.37 -21.52 16 14 O -0.50 -11.82 13.42 -51.31 -0.69 -12.51 16 15 C 0.46 19.43 6.66 87.66 0.58 20.02 16 16 O -0.59 -26.41 12.27 -3.07 -0.04 -26.45 16 17 C 0.05 1.91 4.47 85.56 0.38 2.30 16 18 N -0.46 -15.73 5.29 -693.02 -3.67 -19.40 16 19 C 0.04 1.05 6.28 86.64 0.54 1.60 16 20 C -0.07 -1.85 7.03 30.66 0.22 -1.63 16 21 C -0.14 -4.59 6.02 -19.49 -0.12 -4.71 16 22 C -0.09 -2.64 10.03 22.21 0.22 -2.42 16 23 C -0.15 -4.17 10.06 22.30 0.22 -3.94 16 24 C -0.11 -3.30 10.02 22.21 0.22 -3.08 16 25 C -0.16 -5.82 9.50 22.47 0.21 -5.61 16 26 C 0.10 3.55 4.25 38.28 0.16 3.71 16 27 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 28 H 0.06 2.70 3.02 -2.39 -0.01 2.70 16 29 H 0.06 2.94 7.32 -2.39 -0.02 2.93 16 30 H 0.12 3.75 8.14 -2.38 -0.02 3.73 16 31 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 32 H 0.43 5.84 9.10 -74.06 -0.67 5.16 16 33 H 0.12 3.98 7.55 -2.39 -0.02 3.97 16 34 H 0.10 3.82 7.14 -2.39 -0.02 3.81 16 35 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.06 2.13 5.42 -2.38 -0.01 2.12 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 39 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 40 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 41 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 42 H 0.11 3.87 7.29 -2.91 -0.02 3.84 16 Total: -1.00 -65.25 343.50 1.91 -63.34 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.35 Total: 29.37 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 4.96 Total: 11.50 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -4.73 Total: -88.44 kcal Atomic # 8 Polarization: -60.13 SS G_CDS: -0.36 Total: -60.49 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.70 Total: 44.73 kcal Total: -65.25 1.91 -63.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.682 kcal (2) G-P(sol) polarization free energy of solvation -65.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds