Wall clock time and date at job start Fri Apr 10 2020 23:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50698 * 109.47083 * 119.99929 * 2 1 3 5 5 H 1.07999 * 120.00218 * 119.99917 * 4 2 1 6 6 C 1.37878 * 120.00017 * 300.00077 * 4 2 1 7 7 N 1.31519 * 119.99868 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00121 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47023 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.46764 * 299.99837 * 8 6 4 11 11 H 1.48492 * 109.47035 * 59.99934 * 8 6 4 12 12 N 1.46505 * 109.47056 * 239.99722 * 2 1 3 13 13 C 1.34774 * 119.99558 * 84.99908 * 12 2 1 14 14 O 1.21352 * 120.00535 * 0.02562 * 13 12 2 15 15 C 1.49356 * 119.99401 * 179.97438 * 13 12 2 16 16 O 1.21372 * 120.00489 * 0.02562 * 15 13 12 17 17 N 1.34776 * 119.99818 * 180.02562 * 15 13 12 18 18 C 1.39721 * 120.00136 * 175.38289 * 17 15 13 19 19 C 1.38931 * 120.07750 * 214.81722 * 18 17 15 20 20 C 1.38095 * 119.92669 * 179.80732 * 19 18 17 21 21 C 1.38293 * 120.07665 * 0.45014 * 20 19 18 22 22 C 1.50693 * 119.92664 * 179.76438 * 21 20 19 23 23 C 1.53000 * 109.47042 * 240.01834 * 22 21 20 24 24 C 1.53002 * 109.47113 * 0.02562 * 22 21 20 25 25 C 1.53003 * 109.47362 * 120.01910 * 22 21 20 26 26 C 1.38300 * 120.15026 * 359.77862 * 21 20 19 27 27 C 1.38102 * 120.07483 * 0.02562 * 26 21 20 28 28 H 1.08992 * 109.46887 * 299.99968 * 1 2 3 29 29 H 1.09001 * 109.46667 * 60.00559 * 1 2 3 30 30 H 1.08998 * 109.47109 * 179.97438 * 1 2 3 31 31 H 0.97002 * 119.99858 * 180.02562 * 7 6 4 32 32 H 0.97000 * 120.00056 * 264.99777 * 12 2 1 33 33 H 0.97008 * 120.00055 * 355.37767 * 17 15 13 34 34 H 1.07998 * 120.03605 * 359.97438 * 19 18 17 35 35 H 1.08001 * 119.96625 * 180.20875 * 20 19 18 36 36 H 1.09001 * 109.47440 * 60.00096 * 23 22 21 37 37 H 1.09002 * 109.46788 * 179.97438 * 23 22 21 38 38 H 1.08998 * 109.47120 * 299.99763 * 23 22 21 39 39 H 1.08996 * 109.46893 * 60.00137 * 24 22 21 40 40 H 1.09002 * 109.47326 * 179.97438 * 24 22 21 41 41 H 1.08993 * 109.46811 * 299.99850 * 24 22 21 42 42 H 1.09000 * 109.46989 * 59.99485 * 25 22 21 43 43 H 1.09002 * 109.47402 * 180.02562 * 25 22 21 44 44 H 1.09005 * 109.47171 * 299.99929 * 25 22 21 45 45 H 1.07997 * 119.95898 * 179.97438 * 26 21 20 46 46 H 1.08000 * 120.03701 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6033 8 14 2.3225 -1.1195 4.0080 9 1 1.8279 -0.4191 5.2205 10 1 1.8281 -2.5197 4.0082 11 1 3.8075 -1.1189 4.0078 12 7 2.0184 -0.6907 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8589 1.1592 -2.4116 15 6 2.6455 -0.7224 -3.5764 16 8 2.9341 -1.9000 -3.5219 17 7 2.7746 -0.0499 -4.7373 18 6 3.3310 -0.6817 -5.8524 19 6 4.1149 0.0410 -6.7431 20 6 4.6666 -0.5874 -7.8421 21 6 4.4319 -1.9325 -8.0616 22 6 5.0312 -2.6136 -9.2648 23 6 3.9117 -3.1792 -10.1410 24 6 5.8473 -1.6007 -10.0705 25 6 5.9434 -3.7526 -8.8046 26 6 3.6482 -2.6539 -7.1796 27 6 3.0967 -2.0326 -6.0764 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7087 1.1613 3.4844 32 1 2.2491 -1.6318 -1.1526 33 1 2.4812 0.8727 -4.7987 34 1 4.2948 1.0925 -6.5748 35 1 5.2788 -0.0270 -8.5331 36 1 3.2619 -2.3679 -10.4690 37 1 4.3453 -3.6715 -11.0116 38 1 3.3305 -3.9008 -9.5670 39 1 6.6448 -1.1980 -9.4462 40 1 6.2812 -2.0935 -10.9406 41 1 5.1976 -0.7894 -10.3984 42 1 5.3621 -4.4741 -8.2305 43 1 6.3772 -4.2450 -9.6749 44 1 6.7410 -3.3496 -8.1803 45 1 3.4666 -3.7041 -7.3542 46 1 2.4844 -2.5965 -5.3882 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123108044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:47:43 Heat of formation + Delta-G solvation = -75.807190 kcal Electronic energy + Delta-G solvation = -25921.787018 eV Core-core repulsion = 22196.154141 eV Total energy + Delta-G solvation = -3725.632877 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.13075 -40.76760 -39.65399 -37.65520 -36.94800 -35.28092 -34.33083 -32.10515 -31.15345 -30.05041 -28.19544 -28.05489 -27.39667 -26.31119 -23.89456 -23.51059 -22.40409 -21.26588 -20.20253 -20.12099 -18.74598 -18.14175 -17.53102 -17.09441 -16.97647 -16.56986 -16.13693 -15.72495 -15.52635 -15.13261 -15.06019 -14.91416 -14.64080 -14.45583 -14.24516 -13.80781 -13.72294 -13.68287 -13.09728 -13.05758 -12.92590 -12.85852 -12.73957 -12.70495 -12.49936 -12.40071 -12.30726 -12.15689 -11.87957 -11.61494 -11.46256 -11.20768 -11.18939 -10.69128 -10.60122 -10.01594 -9.87856 -9.09785 -8.21459 -6.38993 -0.04448 0.45275 0.59622 1.30482 1.45782 1.46725 1.55073 2.10318 2.38058 2.71425 2.80944 3.09172 3.44538 3.70452 3.82386 4.05163 4.14168 4.17291 4.39718 4.45065 4.53759 4.57341 4.67758 4.83123 4.84649 4.86540 4.95658 4.99378 5.01392 5.06728 5.09001 5.11687 5.23476 5.26566 5.27996 5.32557 5.42040 5.43177 5.48394 5.53805 5.58196 5.73073 5.75010 5.97923 6.01639 6.04948 6.51372 6.62642 6.75761 7.03579 7.33062 8.84449 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029075 B = 0.002246 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.808956 B =12464.728262 C =12886.214298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.268 3.732 3 H 0.015 0.985 4 C -0.554 4.554 5 H 0.070 0.930 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.972 3.028 9 H -0.282 1.282 10 H -0.266 1.266 11 H -0.272 1.272 12 N -0.670 5.670 13 C 0.496 3.504 14 O -0.557 6.557 15 C 0.516 3.484 16 O -0.519 6.519 17 N -0.635 5.635 18 C 0.113 3.887 19 C -0.136 4.136 20 C -0.103 4.103 21 C -0.082 4.082 22 C -0.028 4.028 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.139 4.139 26 C -0.102 4.102 27 C -0.135 4.135 28 H 0.074 0.926 29 H 0.020 0.980 30 H 0.040 0.960 31 H 0.268 0.732 32 H 0.410 0.590 33 H 0.429 0.571 34 H 0.146 0.854 35 H 0.156 0.844 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.050 0.950 45 H 0.135 0.865 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.165 -6.130 -26.104 28.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.166 3.834 3 H 0.033 0.967 4 C -0.592 4.592 5 H 0.088 0.912 6 C -0.181 4.181 7 N -0.550 5.550 8 Si 0.797 3.203 9 H -0.208 1.208 10 H -0.191 1.191 11 H -0.197 1.197 12 N -0.319 5.319 13 C 0.276 3.724 14 O -0.437 6.437 15 C 0.298 3.702 16 O -0.395 6.395 17 N -0.281 5.281 18 C 0.020 3.980 19 C -0.156 4.156 20 C -0.121 4.121 21 C -0.083 4.083 22 C -0.028 4.028 23 C -0.195 4.195 24 C -0.201 4.201 25 C -0.197 4.197 26 C -0.121 4.121 27 C -0.155 4.155 28 H 0.093 0.907 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.246 0.754 33 H 0.268 0.732 34 H 0.163 0.837 35 H 0.173 0.827 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.153 0.847 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.056 -5.993 -25.868 27.748 hybrid contribution -0.138 -0.093 1.338 1.348 sum 7.918 -6.086 -24.530 26.485 Atomic orbital electron populations 1.21930 0.97372 0.99829 1.00366 1.18631 0.91756 0.92377 0.80656 0.96702 1.21449 1.33173 1.13826 0.90742 0.91213 1.25738 0.94731 0.95569 1.02082 1.70011 1.36456 1.23557 1.24931 0.85391 0.78630 0.78688 0.77614 1.20773 1.19097 1.19705 1.46272 1.61799 1.14814 1.09057 1.20124 0.80178 0.87018 0.85110 1.90707 1.51452 1.16279 1.85242 1.20227 0.78589 0.86781 0.84560 1.90720 1.48116 1.15549 1.85078 1.43056 1.59432 1.17555 1.08094 1.18012 0.98177 0.93453 0.88344 1.21198 0.97377 1.01289 0.95703 1.21284 0.99414 0.94380 0.96991 1.20135 0.97528 0.93997 0.96590 1.19540 0.95636 0.95660 0.91966 1.21889 0.97438 1.00792 0.99363 1.21971 0.99651 0.98627 0.99852 1.21908 0.98941 0.97224 1.01598 1.21007 0.97301 1.00448 0.93305 1.21285 1.01645 0.94035 0.98531 0.90708 0.96069 0.94135 0.92266 0.75421 0.73177 0.83651 0.82681 0.92694 0.91065 0.92767 0.92139 0.91278 0.91766 0.92844 0.90966 0.93132 0.84737 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.76 9.26 71.98 0.67 -6.09 16 2 C 0.27 13.80 2.56 44.25 0.11 13.91 16 3 H 0.02 0.89 7.58 -2.39 -0.02 0.87 16 4 C -0.55 -29.47 8.73 25.60 0.22 -29.24 16 5 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 6 C 0.02 1.05 5.30 84.65 0.45 1.50 16 7 N -0.91 -51.11 11.32 21.45 0.24 -50.86 16 8 Si 0.97 41.95 29.54 68.60 2.03 43.98 16 9 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 12 N -0.67 -29.29 5.06 -447.52 -2.27 -31.56 16 13 C 0.50 20.27 7.85 87.24 0.68 20.95 16 14 O -0.56 -25.08 16.14 -3.25 -0.05 -25.13 16 15 C 0.52 17.88 7.73 87.24 0.67 18.55 16 16 O -0.52 -19.19 13.91 -3.32 -0.05 -19.23 16 17 N -0.63 -17.81 5.32 -304.84 -1.62 -19.43 16 18 C 0.11 2.90 6.30 38.22 0.24 3.14 16 19 C -0.14 -2.69 9.97 22.40 0.22 -2.47 16 20 C -0.10 -1.71 8.97 22.25 0.20 -1.51 16 21 C -0.08 -1.42 4.77 -19.84 -0.09 -1.52 16 22 C -0.03 -0.35 0.85 -52.93 -0.05 -0.39 16 23 C -0.14 -1.53 8.29 71.98 0.60 -0.94 16 24 C -0.14 -1.35 7.13 71.98 0.51 -0.84 16 25 C -0.14 -1.71 8.29 71.98 0.60 -1.12 16 26 C -0.10 -2.14 8.70 22.25 0.19 -1.94 16 27 C -0.13 -3.56 8.70 22.40 0.19 -3.36 16 28 H 0.07 4.02 6.07 -2.39 -0.01 4.01 16 29 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.41 16.60 8.01 -92.71 -0.74 15.86 16 33 H 0.43 10.63 8.30 -92.70 -0.77 9.86 16 34 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 35 H 0.16 1.77 5.88 -2.91 -0.02 1.75 16 36 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 38 H 0.05 0.64 7.38 -2.39 -0.02 0.63 16 39 H 0.06 0.57 7.51 -2.39 -0.02 0.55 16 40 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.06 0.55 7.51 -2.39 -0.02 0.54 16 42 H 0.05 0.71 7.38 -2.39 -0.02 0.69 16 43 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 44 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 45 H 0.13 2.40 7.09 -2.91 -0.02 2.38 16 46 H 0.12 3.60 6.22 -2.91 -0.02 3.58 16 Total: -1.00 -63.46 376.02 3.21 -60.25 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: -0.50 Total: 33.37 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 5.43 Total: 8.63 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -3.64 Total: -101.86 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -0.10 Total: -44.36 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -63.46 3.21 -60.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123108044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.561 kcal (2) G-P(sol) polarization free energy of solvation -63.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds