Wall clock time and date at job start Fri Apr 10 2020 23:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47365 * 2 1 4 4 C 1.50706 * 109.47291 * 239.99961 * 2 1 3 5 5 H 1.07998 * 120.00391 * 240.00216 * 4 2 1 6 6 C 1.37882 * 119.99625 * 59.99714 * 4 2 1 7 7 N 1.31510 * 119.99884 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99595 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47483 * 60.00400 * 8 6 4 10 10 H 1.48508 * 109.46884 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47484 * 299.99958 * 8 6 4 12 12 N 1.46905 * 109.47359 * 120.00202 * 2 1 3 13 13 C 1.46897 * 111.00191 * 176.04580 * 12 2 1 14 14 C 1.46896 * 110.99891 * 300.00103 * 12 2 1 15 15 C 1.50693 * 109.47378 * 169.99772 * 14 12 2 16 16 O 1.21287 * 119.99849 * 0.02562 * 15 14 12 17 17 N 1.34782 * 120.00376 * 179.97438 * 15 14 12 18 18 C 1.46498 * 119.99965 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.46687 * 180.02562 * 18 17 15 20 20 H 1.08991 * 110.66831 * 308.21388 * 19 18 17 21 21 C 1.54706 * 110.74628 * 184.99927 * 19 18 17 22 22 C 1.51649 * 101.92909 * 216.39518 * 21 19 18 23 23 C 1.37739 * 132.18177 * 195.40310 * 22 21 19 24 24 C 1.38352 * 119.97840 * 179.61719 * 23 22 21 25 25 C 1.38289 * 119.76895 * 0.02562 * 24 23 22 26 26 C 1.37927 * 120.34955 * 0.16752 * 25 24 23 27 27 C 1.38888 * 107.03417 * 15.37815 * 22 21 19 28 28 O 1.36129 * 111.23691 * 1.08032 * 27 22 21 29 29 H 1.08996 * 109.47027 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47051 * 299.99801 * 1 2 3 31 31 H 1.08998 * 109.47327 * 60.00364 * 1 2 3 32 32 H 0.97002 * 119.99688 * 179.97438 * 7 6 4 33 33 H 1.08993 * 109.47508 * 183.95261 * 13 12 2 34 34 H 1.08998 * 109.46965 * 303.95480 * 13 12 2 35 35 H 1.09002 * 109.46775 * 63.95210 * 13 12 2 36 36 H 1.09001 * 109.47412 * 49.99461 * 14 12 2 37 37 H 1.09001 * 109.47084 * 290.00051 * 14 12 2 38 38 H 0.97004 * 119.99482 * 0.02562 * 17 15 14 39 39 H 1.08992 * 109.47311 * 60.00333 * 18 17 15 40 40 H 1.08997 * 109.46828 * 299.99977 * 18 17 15 41 41 H 1.09003 * 110.93864 * 334.54722 * 21 19 18 42 42 H 1.09000 * 110.94098 * 98.19870 * 21 19 18 43 43 H 1.08002 * 120.01263 * 359.64354 * 23 22 21 44 44 H 1.07997 * 120.11427 * 180.02562 * 24 23 22 45 45 H 1.08001 * 119.82178 * 180.14117 * 25 24 23 46 46 H 1.08004 * 119.88251 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.8258 -2.5202 -4.0078 10 1 1.8268 -0.4199 -5.2205 11 1 3.8063 -1.1209 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7946 1.1870 14 6 1.5487 -0.0265 2.4211 15 6 1.8580 -0.8912 3.6158 16 8 2.4163 -1.9572 3.4646 17 7 1.5151 -0.4795 4.8526 18 6 1.8163 -1.3200 6.0141 19 6 1.3255 -0.6262 7.2865 20 1 1.7040 0.3945 7.3385 21 6 1.7393 -1.4288 8.5427 22 6 0.5398 -1.2322 9.4494 23 6 0.3567 -1.4388 10.7989 24 6 -0.8677 -1.1624 11.3807 25 6 -1.9042 -0.6797 10.6029 26 6 -1.7243 -0.4759 9.2507 27 6 -0.4956 -0.7542 8.6566 28 8 -0.1104 -0.6452 7.3555 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.7094 1.1618 -3.4844 33 1 3.8164 -1.3722 2.0499 34 1 3.8069 -1.2915 0.2718 35 1 3.9192 0.2043 1.2300 36 1 0.4723 0.1324 2.3564 37 1 2.0519 0.9345 2.5280 38 1 1.0689 0.3733 4.9735 39 1 2.8927 -1.4786 6.0784 40 1 1.3130 -2.2809 5.9074 41 1 1.8778 -2.4832 8.3032 42 1 2.6405 -1.0118 8.9921 43 1 1.1689 -1.8159 11.4027 44 1 -1.0135 -1.3231 12.4387 45 1 -2.8597 -0.4615 11.0566 46 1 -2.5391 -0.0989 8.6502 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161882650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:49:27 Heat of formation + Delta-G solvation = -47.362523 kcal Electronic energy + Delta-G solvation = -25875.730814 eV Core-core repulsion = 22151.331390 eV Total energy + Delta-G solvation = -3724.399424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.19793 -40.80483 -38.59153 -38.15010 -35.88740 -34.72127 -33.72904 -31.53250 -31.05884 -30.95082 -29.48746 -27.29429 -26.37891 -25.06303 -23.51027 -22.80956 -22.55293 -21.88787 -20.97196 -18.63036 -18.55974 -17.99815 -17.70946 -17.55470 -16.94162 -16.45217 -16.43901 -15.87776 -15.62834 -15.32127 -15.10863 -15.02254 -14.59614 -14.35212 -14.15405 -14.01506 -13.97280 -13.64807 -13.33247 -13.29921 -12.93930 -12.83398 -12.74377 -12.62790 -12.58674 -12.43242 -12.11385 -11.97125 -11.90773 -11.85671 -11.69842 -10.95490 -10.67976 -10.50073 -10.13196 -9.83573 -9.11619 -8.92513 -8.11503 -6.22076 0.34227 0.42253 1.42553 1.44564 1.52108 1.65745 2.00560 2.21981 2.43925 2.76869 3.16466 3.31818 3.41483 3.56116 3.80422 3.91348 3.94718 4.06356 4.21816 4.30033 4.33501 4.42540 4.46598 4.55414 4.60688 4.63438 4.66672 4.70794 4.84978 4.89648 4.91986 5.01858 5.09762 5.12576 5.25312 5.39334 5.41357 5.47108 5.48912 5.56947 5.70618 5.71912 5.76267 6.22879 6.25048 6.36709 6.45883 6.73491 6.90382 7.29131 7.46221 8.94274 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.034832 B = 0.002072 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.673438 B =13509.113929 C =14059.700068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.217 3.783 3 H -0.026 1.026 4 C -0.522 4.522 5 H 0.054 0.946 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.272 1.272 12 N -0.537 5.537 13 C 0.042 3.958 14 C 0.031 3.969 15 C 0.521 3.479 16 O -0.560 6.560 17 N -0.720 5.720 18 C 0.129 3.871 19 C 0.074 3.926 20 H 0.113 0.887 21 C -0.097 4.097 22 C -0.186 4.186 23 C -0.077 4.077 24 C -0.151 4.151 25 C -0.089 4.089 26 C -0.157 4.157 27 C 0.076 3.924 28 O -0.320 6.320 29 H 0.026 0.974 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.263 0.737 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.010 0.990 36 H 0.111 0.889 37 H 0.069 0.931 38 H 0.414 0.586 39 H 0.099 0.901 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.120 0.880 43 H 0.147 0.853 44 H 0.153 0.847 45 H 0.154 0.846 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.711 0.372 30.688 30.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.110 3.890 3 H -0.009 1.009 4 C -0.560 4.560 5 H 0.072 0.928 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.785 3.215 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.198 1.198 12 N -0.262 5.262 13 C -0.106 4.106 14 C -0.100 4.100 15 C 0.308 3.692 16 O -0.438 6.438 17 N -0.375 5.375 18 C 0.005 3.995 19 C 0.018 3.982 20 H 0.130 0.870 21 C -0.135 4.135 22 C -0.187 4.187 23 C -0.095 4.095 24 C -0.168 4.168 25 C -0.107 4.107 26 C -0.175 4.175 27 C 0.031 3.969 28 O -0.235 6.235 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.028 0.972 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.251 0.749 39 H 0.117 0.883 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.138 0.862 43 H 0.164 0.836 44 H 0.171 0.829 45 H 0.172 0.828 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.701 -0.739 30.216 30.272 hybrid contribution 0.302 0.838 -1.190 1.486 sum -1.398 0.099 29.026 29.060 Atomic orbital electron populations 1.21704 0.97009 0.99205 1.00269 1.19110 0.92842 0.90468 0.86566 1.00884 1.21370 1.31271 1.12293 0.91072 0.92777 1.25670 0.95402 0.95833 1.01718 1.69986 1.37547 1.23935 1.24164 0.85594 0.78705 0.78603 0.78606 1.20063 1.20630 1.19765 1.61745 1.10798 1.52388 1.01240 1.22239 0.87536 0.98654 1.02164 1.22073 1.03417 0.95365 0.89185 1.20740 0.77528 0.86396 0.84536 1.90632 1.42738 1.24408 1.85995 1.45802 1.62133 1.24290 1.05240 1.21469 1.01539 0.93908 0.82535 1.23688 0.78119 1.01366 0.94980 0.86975 1.21790 0.97581 1.02292 0.91799 1.21035 0.96565 1.05346 0.95734 1.20678 0.98626 0.97889 0.92294 1.21445 0.92610 1.01349 1.01440 1.21236 1.00490 0.97054 0.91900 1.20582 0.95507 1.05554 0.95890 1.19925 0.96066 0.97280 0.83608 1.86877 1.24004 1.89436 1.23161 0.95480 0.94273 0.91707 0.92830 0.91077 0.92523 0.97151 0.87160 0.91289 0.74937 0.88307 0.92156 0.88432 0.86179 0.83558 0.82885 0.82842 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.09 8.76 71.98 0.63 -5.46 16 2 C 0.22 11.26 2.06 44.17 0.09 11.35 16 3 H -0.03 -1.47 8.14 -2.38 -0.02 -1.49 16 4 C -0.52 -29.66 7.88 25.60 0.20 -29.46 16 5 H 0.05 3.13 6.41 -2.91 -0.02 3.11 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -52.83 11.32 21.45 0.24 -52.58 16 8 Si 0.96 44.73 29.54 68.60 2.03 46.75 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 N -0.54 -24.57 4.36 -906.06 -3.95 -28.52 16 13 C 0.04 1.85 8.93 127.69 1.14 2.99 16 14 C 0.03 1.09 5.26 85.56 0.45 1.54 16 15 C 0.52 17.21 7.56 87.65 0.66 17.88 16 16 O -0.56 -22.88 14.31 -3.05 -0.04 -22.93 16 17 N -0.72 -16.86 5.56 -463.06 -2.57 -19.43 16 18 C 0.13 2.57 5.35 86.38 0.46 3.04 16 19 C 0.07 1.17 3.65 31.18 0.11 1.28 16 20 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 21 C -0.10 -1.23 6.65 30.73 0.20 -1.03 16 22 C -0.19 -3.00 6.27 -19.52 -0.12 -3.12 16 23 C -0.08 -0.96 10.03 22.18 0.22 -0.74 16 24 C -0.15 -1.66 10.07 22.31 0.22 -1.44 16 25 C -0.09 -1.12 10.02 22.21 0.22 -0.90 16 26 C -0.16 -2.72 10.06 22.45 0.23 -2.50 16 27 C 0.08 1.52 7.04 22.68 0.16 1.68 16 28 O -0.32 -6.97 10.81 -95.02 -1.03 -7.99 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.04 1.62 6.20 -2.39 -0.01 1.60 16 31 H 0.06 3.48 6.07 -2.39 -0.01 3.47 16 32 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.07 2.97 5.88 -2.39 -0.01 2.96 16 34 H 0.06 2.66 6.10 -2.39 -0.01 2.65 16 35 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.11 3.72 5.83 -2.39 -0.01 3.71 16 37 H 0.07 2.20 8.12 -2.39 -0.02 2.19 16 38 H 0.41 7.61 8.47 -92.71 -0.79 6.82 16 39 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 41 H 0.10 1.21 7.92 -2.39 -0.02 1.19 16 42 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 44 H 0.15 0.83 8.06 -2.91 -0.02 0.81 16 45 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 46 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -72.34 370.64 0.22 -72.12 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.21 Total: 16.30 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 5.34 Total: -3.72 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -6.28 Total: -100.53 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -1.07 Total: -30.92 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -72.34 0.22 -72.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161882650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.758 kcal (2) G-P(sol) polarization free energy of solvation -72.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds