Wall clock time and date at job start Fri Apr 10 2020 23:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47292 * 2 1 4 4 C 1.53004 * 109.46803 * 240.00607 * 2 1 3 5 5 C 1.50698 * 109.46913 * 175.00159 * 4 2 1 6 6 C 1.38265 * 119.94148 * 269.72358 * 5 4 2 7 7 C 1.38139 * 120.05289 * 179.73147 * 6 5 4 8 8 C 1.38735 * 119.94742 * 0.56324 * 7 6 5 9 9 O 1.35900 * 120.05985 * 179.68409 * 8 7 6 10 10 C 1.38732 * 119.88680 * 359.71022 * 8 7 6 11 11 C 1.38154 * 119.94129 * 359.97438 * 10 8 7 12 12 N 1.46502 * 109.47093 * 120.00576 * 2 1 3 13 13 C 1.34772 * 119.99575 * 274.99403 * 12 2 1 14 14 O 1.21581 * 120.00401 * 354.93528 * 13 12 2 15 15 N 1.34778 * 119.99422 * 174.93029 * 13 12 2 16 16 C 1.46508 * 119.99613 * 185.08567 * 15 13 12 17 17 C 1.52995 * 109.46733 * 184.73002 * 16 15 13 18 18 C 1.50703 * 115.55176 * 64.84667 * 17 16 15 19 19 H 1.07997 * 119.99822 * 266.77299 * 18 17 16 20 20 C 1.37876 * 119.99915 * 86.78147 * 18 17 16 21 21 N 1.31513 * 120.00001 * 178.76369 * 20 18 17 22 22 Si 1.86802 * 120.00013 * 358.76148 * 20 18 17 23 23 H 1.48499 * 109.47171 * 91.34121 * 22 20 18 24 24 H 1.48503 * 109.47080 * 211.34085 * 22 20 18 25 25 H 1.48503 * 109.47060 * 331.33854 * 22 20 18 26 26 C 1.53005 * 117.50011 * 279.17455 * 17 16 15 27 27 C 1.53006 * 117.49743 * 210.51557 * 17 16 15 28 28 H 1.09007 * 109.46579 * 299.99928 * 1 2 3 29 29 H 1.08999 * 109.47292 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47329 * 59.99276 * 1 2 3 31 31 H 1.09004 * 109.46826 * 295.00208 * 4 2 1 32 32 H 1.08995 * 109.47110 * 54.99816 * 4 2 1 33 33 H 1.08000 * 119.97359 * 359.97438 * 6 5 4 34 34 H 1.08004 * 120.03064 * 180.25045 * 7 6 5 35 35 H 0.96696 * 114.00053 * 270.02341 * 9 8 7 36 36 H 1.08001 * 120.03344 * 179.97438 * 10 8 7 37 37 H 1.08000 * 119.97223 * 180.02562 * 11 10 8 38 38 H 0.97000 * 119.99864 * 95.00010 * 12 2 1 39 39 H 0.96994 * 120.00429 * 5.08645 * 15 13 12 40 40 H 1.08998 * 109.47253 * 304.72695 * 16 15 13 41 41 H 1.08995 * 109.46950 * 64.73155 * 16 15 13 42 42 H 0.96996 * 120.00156 * 180.02562 * 21 20 18 43 43 H 1.09005 * 117.49577 * 0.02562 * 26 17 16 44 44 H 1.09002 * 117.50263 * 145.02408 * 26 17 16 45 45 H 1.08997 * 117.49732 * 214.97652 * 27 17 16 46 46 H 1.08996 * 117.49658 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6149 -1.3128 6 6 4.1312 0.4471 -1.9736 7 6 5.5077 0.5498 -2.0285 8 6 6.2989 -0.4200 -1.4299 9 8 7.6533 -0.3246 -1.4880 10 6 5.7052 -1.4875 -0.7724 11 6 4.3281 -1.5822 -0.7147 12 7 2.0184 -0.6907 1.1961 13 6 2.1472 -0.0184 2.3570 14 8 1.9468 1.1803 2.3909 15 7 2.4980 -0.6750 3.4806 16 6 2.5298 0.0328 4.7630 17 6 3.0688 -0.9017 5.8479 18 6 4.5015 -1.3370 5.6777 19 1 4.7281 -2.2603 5.1653 20 6 5.5230 -0.5566 6.1763 21 7 6.7720 -0.9484 6.0493 22 14 5.1329 1.0573 7.0323 23 1 4.9757 0.8193 8.4896 24 1 6.2413 2.0190 6.8044 25 1 3.8716 1.6166 6.4831 26 6 2.0933 -1.9072 6.4629 27 6 2.5578 -0.6958 7.2753 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 1.7515 -1.7714 -1.2058 32 1 1.6053 -0.2616 -2.1370 33 1 3.5149 1.1990 -2.4439 34 1 5.9677 1.3816 -2.5413 35 1 8.0457 -0.7604 -2.2568 36 1 6.3188 -2.2440 -0.3059 37 1 3.8653 -2.4128 -0.2026 38 1 2.2491 -1.6319 1.1524 39 1 2.7296 -1.6161 3.4402 40 1 3.1775 0.9055 4.6804 41 1 1.5216 0.3522 5.0266 42 1 7.4905 -0.3996 6.4003 43 1 1.0675 -1.9032 6.0942 44 1 2.4878 -2.8834 6.7448 45 1 3.2578 -0.8757 8.0912 46 1 1.8379 0.1056 7.4414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430454389.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:47:59 Heat of formation + Delta-G solvation = -56.631748 kcal Electronic energy + Delta-G solvation = -26799.745026 eV Core-core repulsion = 23074.943658 eV Total energy + Delta-G solvation = -3724.801368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.19657 -40.56169 -38.94326 -38.17233 -36.55357 -34.96510 -34.21227 -32.75404 -31.91356 -30.87024 -28.29877 -27.06764 -26.82189 -23.79770 -23.40435 -23.07911 -21.99003 -21.50244 -21.04831 -19.39241 -19.28495 -18.30893 -17.37757 -16.96971 -16.84586 -16.60411 -16.29896 -16.19137 -15.78390 -15.45215 -14.99863 -14.81993 -14.74704 -14.45750 -14.37211 -14.15642 -13.83993 -13.66273 -13.32094 -13.13626 -13.09468 -12.82523 -12.64161 -12.47655 -12.19239 -12.09622 -11.97555 -11.82142 -11.59882 -11.39261 -11.24075 -10.97678 -10.65504 -10.35788 -10.20957 -9.92209 -9.58588 -9.37365 -8.30479 -6.35589 0.27830 0.41727 1.31041 1.38040 1.48101 1.87660 2.29345 2.35652 2.68505 3.05641 3.15792 3.31045 3.56069 3.81935 3.91272 4.03953 4.06098 4.08039 4.34690 4.38335 4.44036 4.44225 4.49985 4.54892 4.55976 4.79456 4.81211 4.85184 4.88475 4.95556 5.01893 5.09679 5.11352 5.17992 5.33166 5.34182 5.42088 5.48900 5.50900 5.59753 5.67627 5.71082 5.78294 5.95407 6.17740 6.28262 6.72431 6.85030 7.25495 7.34725 7.73200 8.84193 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011147 B = 0.004212 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.290092 B = 6646.828193 C = 8308.884729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.162 3.838 3 H 0.058 0.942 4 C -0.075 4.075 5 C -0.094 4.094 6 C -0.106 4.106 7 C -0.157 4.157 8 C 0.081 3.919 9 O -0.517 6.517 10 C -0.163 4.163 11 C -0.101 4.101 12 N -0.727 5.727 13 C 0.698 3.302 14 O -0.645 6.645 15 N -0.720 5.720 16 C 0.186 3.814 17 C -0.041 4.041 18 C -0.473 4.473 19 H 0.045 0.955 20 C 0.025 3.975 21 N -0.945 5.945 22 Si 0.926 3.074 23 H -0.263 1.263 24 H -0.306 1.306 25 H -0.243 1.243 26 C -0.147 4.147 27 C -0.193 4.193 28 H 0.031 0.969 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.148 0.852 34 H 0.137 0.863 35 H 0.407 0.593 36 H 0.124 0.876 37 H 0.140 0.860 38 H 0.405 0.595 39 H 0.405 0.595 40 H 0.027 0.973 41 H 0.053 0.947 42 H 0.263 0.737 43 H 0.105 0.895 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.450 -2.914 -18.925 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.057 3.943 3 H 0.077 0.923 4 C -0.112 4.112 5 C -0.094 4.094 6 C -0.123 4.123 7 C -0.176 4.176 8 C 0.037 3.963 9 O -0.330 6.330 10 C -0.182 4.182 11 C -0.119 4.119 12 N -0.383 5.383 13 C 0.398 3.602 14 O -0.528 6.528 15 N -0.373 5.373 16 C 0.061 3.939 17 C -0.042 4.042 18 C -0.511 4.511 19 H 0.063 0.937 20 C -0.173 4.173 21 N -0.585 5.585 22 Si 0.752 3.248 23 H -0.188 1.188 24 H -0.234 1.234 25 H -0.166 1.166 26 C -0.184 4.184 27 C -0.231 4.231 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.134 0.866 33 H 0.166 0.834 34 H 0.155 0.845 35 H 0.266 0.734 36 H 0.142 0.858 37 H 0.158 0.842 38 H 0.241 0.759 39 H 0.240 0.760 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.123 0.877 44 H 0.105 0.895 45 H 0.096 0.904 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.549 -1.486 -18.337 21.722 hybrid contribution 1.413 -0.190 0.382 1.476 sum -10.136 -1.676 -17.955 20.686 Atomic orbital electron populations 1.22141 0.93915 1.03092 1.02187 1.20878 0.94375 0.96257 0.82783 0.92337 1.20942 0.89463 1.03328 0.97488 1.20100 0.96834 0.94803 0.97664 1.21251 0.94028 0.98049 0.99019 1.21610 0.94669 0.99830 1.01480 1.18749 0.83223 0.95137 0.99161 1.84817 1.16817 1.79724 1.51605 1.21638 0.96390 0.98730 1.01424 1.21157 0.92560 0.99698 0.98450 1.45074 1.71352 1.13900 1.07995 1.16183 0.77883 0.84815 0.81331 1.90827 1.60991 1.14851 1.86153 1.44875 1.72165 1.14233 1.06060 1.20685 0.97801 0.93528 0.81910 1.19449 0.93876 0.99616 0.91267 1.20343 0.88345 1.06680 1.35684 0.93672 1.25685 0.94605 1.00575 0.96401 1.70011 1.00120 1.39986 1.48357 0.86083 0.78407 0.80367 0.79937 1.18820 1.23398 1.16622 1.22865 0.98510 0.93746 1.03286 1.23018 1.03635 1.01546 0.94887 0.94930 0.90651 0.89427 0.87919 0.86565 0.83430 0.84522 0.73443 0.85773 0.84183 0.75853 0.75952 0.95478 0.92848 0.92848 0.87683 0.89535 0.90381 0.88362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.48 71.98 0.68 -2.02 16 2 C 0.16 3.40 2.61 44.99 0.12 3.52 16 3 H 0.06 1.63 7.51 -2.39 -0.02 1.61 16 4 C -0.07 -1.02 4.89 29.85 0.15 -0.88 16 5 C -0.09 -1.86 4.95 -19.85 -0.10 -1.96 16 6 C -0.11 -2.17 9.69 22.25 0.22 -1.95 16 7 C -0.16 -3.69 9.99 22.37 0.22 -3.47 16 8 C 0.08 2.16 6.71 22.51 0.15 2.31 16 9 O -0.52 -13.10 13.50 -92.42 -1.25 -14.35 16 10 C -0.16 -4.30 9.99 22.37 0.22 -4.08 16 11 C -0.10 -2.24 9.08 22.26 0.20 -2.04 16 12 N -0.73 -18.65 4.53 -457.81 -2.07 -20.72 16 13 C 0.70 25.74 8.52 179.06 1.53 27.27 16 14 O -0.65 -29.36 15.96 -3.97 -0.06 -29.42 16 15 N -0.72 -26.95 5.46 -478.54 -2.61 -29.57 16 16 C 0.19 7.89 5.14 86.38 0.44 8.34 16 17 C -0.04 -1.77 0.81 -52.92 -0.04 -1.81 16 18 C -0.47 -25.52 9.29 25.60 0.24 -25.28 16 19 H 0.05 2.66 8.06 -2.91 -0.02 2.64 16 20 C 0.03 1.45 5.47 84.65 0.46 1.92 16 21 N -0.94 -59.08 13.96 21.45 0.30 -58.78 16 22 Si 0.93 45.82 24.88 68.60 1.71 47.53 16 23 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 25 H -0.24 -11.41 5.73 99.48 0.57 -10.84 16 26 C -0.15 -5.18 9.96 30.62 0.30 -4.87 16 27 C -0.19 -7.48 7.60 30.62 0.23 -7.25 16 28 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.10 0.97 8.08 -2.38 -0.02 0.95 16 32 H 0.12 1.01 8.08 -2.39 -0.02 0.99 16 33 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 35 H 0.41 5.59 9.06 -74.06 -0.67 4.92 16 36 H 0.12 3.23 8.06 -2.91 -0.02 3.21 16 37 H 0.14 2.49 7.56 -2.91 -0.02 2.47 16 38 H 0.41 8.17 7.84 -92.71 -0.73 7.45 16 39 H 0.41 13.73 8.46 -92.71 -0.78 12.95 16 40 H 0.03 1.34 6.61 -2.39 -0.02 1.32 16 41 H 0.05 2.10 8.09 -2.39 -0.02 2.08 16 42 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 43 H 0.10 3.08 8.14 -2.38 -0.02 3.06 16 44 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 45 H 0.08 3.23 7.28 -2.39 -0.02 3.21 16 46 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -78.67 380.40 -0.27 -78.94 By element: Atomic # 1 Polarization: 39.94 SS G_CDS: -1.31 Total: 38.63 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 5.03 Total: -12.26 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -4.39 Total: -109.07 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -1.31 Total: -43.77 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.71 Total: 47.53 kcal Total: -78.67 -0.27 -78.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430454389.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.309 kcal (2) G-P(sol) polarization free energy of solvation -78.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds