Wall clock time and date at job start Fri Apr 10 2020 23:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46865 * 2 1 4 4 C 1.52999 * 109.47004 * 120.00433 * 2 1 3 5 5 C 1.52994 * 109.47110 * 186.50307 * 4 2 1 6 6 C 1.50704 * 109.47532 * 183.33951 * 5 4 2 7 7 C 1.38257 * 119.99407 * 102.69368 * 6 5 4 8 8 C 1.38212 * 119.99397 * 180.02562 * 7 6 5 9 9 C 1.38255 * 120.00584 * 359.97438 * 8 7 6 10 10 C 1.38215 * 119.99765 * 0.02562 * 9 8 7 11 11 C 1.38210 * 120.00230 * 282.67694 * 6 5 4 12 12 N 1.48019 * 119.99947 * 359.97438 * 11 6 5 13 13 O 1.21800 * 119.99994 * 187.25068 * 12 11 6 14 14 O 1.21799 * 119.99993 * 7.24897 * 12 11 6 15 15 N 1.46901 * 109.46947 * 239.99874 * 2 1 3 16 16 C 1.46901 * 110.99551 * 85.61517 * 15 2 1 17 17 C 1.53007 * 109.46948 * 184.16955 * 16 15 2 18 18 C 1.50694 * 115.55006 * 282.02405 * 17 16 15 19 19 H 1.08004 * 119.99715 * 143.92233 * 18 17 16 20 20 C 1.37880 * 120.00059 * 323.92781 * 18 17 16 21 21 N 1.31509 * 119.99662 * 343.05794 * 20 18 17 22 22 Si 1.86795 * 119.99835 * 163.06157 * 20 18 17 23 23 H 1.48504 * 109.47349 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47460 * 120.00077 * 22 20 18 25 25 H 1.48500 * 109.47177 * 239.99588 * 22 20 18 26 26 C 1.53006 * 117.49681 * 136.31432 * 17 16 15 27 27 C 1.53002 * 117.49620 * 67.69465 * 17 16 15 28 28 H 1.09009 * 109.47348 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47541 * 299.99689 * 1 2 3 30 30 H 1.08999 * 109.47368 * 59.99650 * 1 2 3 31 31 H 1.08994 * 109.47718 * 66.49854 * 4 2 1 32 32 H 1.09006 * 109.46988 * 306.49812 * 4 2 1 33 33 H 1.09005 * 109.47538 * 63.34271 * 5 4 2 34 34 H 1.09003 * 109.47180 * 303.34354 * 5 4 2 35 35 H 1.07998 * 120.00671 * 359.97438 * 7 6 5 36 36 H 1.08009 * 119.99995 * 179.70408 * 8 7 6 37 37 H 1.08000 * 120.00555 * 179.97438 * 9 8 7 38 38 H 1.08001 * 120.00145 * 180.02562 * 10 9 8 39 39 H 1.00895 * 111.00183 * 321.65876 * 15 2 1 40 40 H 1.09000 * 109.47108 * 304.16957 * 16 15 2 41 41 H 1.08997 * 109.47513 * 64.17103 * 16 15 2 42 42 H 0.97004 * 119.99482 * 185.01688 * 21 20 18 43 43 H 1.09000 * 117.49793 * 0.02562 * 26 17 16 44 44 H 1.09003 * 117.49322 * 145.02162 * 26 17 16 45 45 H 1.09004 * 117.49719 * 214.97966 * 27 17 16 46 46 H 1.09000 * 117.49731 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5612 -0.5814 1.3336 6 6 4.0724 -1.3603 2.5181 7 6 4.6772 -2.5890 2.3285 8 6 5.1456 -3.3036 3.4149 9 6 5.0099 -2.7895 4.6912 10 6 4.4053 -1.5611 4.8806 11 6 3.9370 -0.8461 3.7939 12 7 3.2904 0.4698 3.9967 13 8 3.2882 0.9835 5.1010 14 8 2.7605 1.0389 3.0592 15 7 2.0196 -0.6925 -1.1994 16 6 2.0962 0.2261 -2.3432 17 6 2.5090 -0.5511 -3.5948 18 6 3.9751 -0.8839 -3.6992 19 1 4.2861 -1.8234 -4.1316 20 6 4.9193 0.0111 -3.2425 21 7 4.5873 1.2655 -3.0292 22 14 6.6702 -0.5584 -2.9269 23 1 6.7845 -2.0052 -3.2416 24 1 7.6039 0.2112 -3.7878 25 1 7.0140 -0.3340 -1.4998 26 6 1.7584 -0.2493 -4.8935 27 6 1.5123 -1.5672 -4.1562 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.7748 -1.7770 1.1930 32 1 1.5847 -0.2791 2.1354 33 1 3.8235 0.4702 1.4497 34 1 4.0130 -0.9699 0.4208 35 1 4.7829 -2.9909 1.3317 36 1 5.6138 -4.2657 3.2674 37 1 5.3755 -3.3480 5.5401 38 1 4.2996 -1.1593 5.8775 39 1 1.4436 -1.4922 -1.4158 40 1 1.1213 0.6857 -2.5060 41 1 2.8338 1.0018 -2.1375 42 1 5.2665 1.9110 -2.7782 43 1 0.9708 0.5033 -4.8563 44 1 2.3251 -0.2912 -5.8237 45 1 1.9170 -2.4761 -4.6014 46 1 0.5627 -1.6821 -3.6337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430755402.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:48:11 Heat of formation + Delta-G solvation = 32.137881 kcal Electronic energy + Delta-G solvation = -27399.038114 eV Core-core repulsion = 23678.086086 eV Total energy + Delta-G solvation = -3720.952028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.28671 -40.49486 -39.17945 -37.91245 -37.20563 -34.46001 -34.12221 -32.85326 -31.57964 -29.66512 -27.60533 -27.43409 -25.91710 -24.88186 -23.63726 -22.94952 -22.44455 -21.43865 -20.77324 -19.97993 -19.57623 -18.58321 -18.12109 -17.09651 -16.84357 -16.62599 -16.14097 -15.93700 -15.70245 -15.33167 -15.00476 -14.66821 -14.44647 -14.27739 -13.97687 -13.58358 -13.46514 -13.22961 -13.05043 -12.83460 -12.81691 -12.64588 -12.52768 -12.46216 -12.29737 -12.24999 -12.09634 -12.02637 -11.75921 -11.68628 -11.36113 -11.03383 -10.93481 -10.54517 -10.53404 -10.06770 -9.88236 -8.88579 -7.99298 -6.03757 -1.15697 0.02824 0.36222 0.48431 1.40698 1.45464 1.54870 2.36951 2.47036 3.06754 3.37356 3.43267 3.48463 3.78190 3.82537 3.99273 4.06372 4.08242 4.20442 4.33189 4.36984 4.41802 4.53504 4.61802 4.65580 4.74763 4.78000 4.85720 4.89276 4.91855 4.96674 4.99916 5.05159 5.11725 5.16865 5.18750 5.22876 5.29763 5.37384 5.44375 5.45615 5.57692 5.65344 5.70485 6.22246 6.47940 6.55855 6.57385 6.93261 6.95550 7.55237 9.00561 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.004351 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.173404 B = 6433.427926 C = 7423.037269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.088 3.912 3 H 0.051 0.949 4 C -0.073 4.073 5 C -0.082 4.082 6 C -0.021 4.021 7 C -0.129 4.129 8 C -0.048 4.048 9 C -0.115 4.115 10 C -0.059 4.059 11 C -0.070 4.070 12 N 0.032 4.968 13 O -0.188 6.188 14 O -0.182 6.182 15 N -0.665 5.665 16 C 0.100 3.900 17 C 0.036 3.964 18 C -0.490 4.490 19 H 0.047 0.953 20 C 0.041 3.959 21 N -0.898 5.898 22 Si 0.939 3.061 23 H -0.267 1.267 24 H -0.289 1.289 25 H -0.282 1.282 26 C -0.212 4.212 27 C -0.186 4.186 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.151 0.849 36 H 0.180 0.820 37 H 0.187 0.813 38 H 0.163 0.837 39 H 0.330 0.670 40 H -0.014 1.014 41 H 0.095 0.905 42 H 0.258 0.742 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.009 -10.553 16.674 19.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 H 0.069 0.931 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.023 4.023 7 C -0.148 4.148 8 C -0.065 4.065 9 C -0.133 4.133 10 C -0.078 4.078 11 C -0.154 4.154 12 N 0.542 4.458 13 O -0.399 6.399 14 O -0.391 6.391 15 N -0.295 5.295 16 C -0.029 4.029 17 C 0.035 3.965 18 C -0.527 4.527 19 H 0.065 0.935 20 C -0.160 4.160 21 N -0.536 5.536 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.215 1.215 25 H -0.208 1.208 26 C -0.251 4.251 27 C -0.223 4.223 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.169 0.831 36 H 0.198 0.802 37 H 0.204 0.796 38 H 0.181 0.819 39 H 0.148 0.852 40 H 0.004 0.996 41 H 0.113 0.887 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.022 -10.900 16.872 20.087 hybrid contribution -0.347 0.996 -0.626 1.226 sum -0.325 -9.904 16.246 19.030 Atomic orbital electron populations 1.22378 0.96427 1.02288 1.01750 1.21438 0.92901 0.97131 0.90747 0.93093 1.21349 0.92962 1.00050 0.96769 1.20732 0.97693 0.98964 0.94536 1.20139 0.94048 0.95582 0.92492 1.21520 0.98455 0.92597 1.02190 1.22118 0.92673 1.00354 0.91391 1.21676 0.98344 0.93814 0.99434 1.21387 0.93686 0.94635 0.98126 1.21240 1.10584 0.86111 0.97464 1.43968 0.98749 1.03254 0.99824 1.94451 1.64650 1.68667 1.12106 1.94550 1.45552 1.65295 1.33751 1.60427 1.55948 1.09580 1.03580 1.21566 0.96395 0.95634 0.89281 1.19065 0.91408 0.96096 0.89899 1.20613 0.90110 1.02660 1.39336 0.93516 1.25401 1.01528 0.94532 0.94494 1.69886 1.33923 1.02294 1.47531 0.85809 0.81100 0.78803 0.77680 1.19077 1.21509 1.20778 1.22966 1.04231 0.98876 0.99018 1.22794 1.00929 0.92678 1.05928 0.91541 0.91539 0.93770 0.91746 0.91553 0.91834 0.90353 0.83100 0.80243 0.79620 0.81937 0.85243 0.99570 0.88719 0.93231 0.91251 0.91564 0.90549 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.94 9.16 71.98 0.66 -4.28 16 2 C 0.09 3.06 2.57 44.91 0.12 3.17 16 3 H 0.05 2.05 7.84 -2.39 -0.02 2.03 16 4 C -0.07 -2.28 4.33 30.59 0.13 -2.14 16 5 C -0.08 -2.73 4.56 29.85 0.14 -2.60 16 6 C -0.02 -0.57 5.15 -19.87 -0.10 -0.67 16 7 C -0.13 -2.65 9.67 22.27 0.22 -2.43 16 8 C -0.05 -0.59 10.05 22.27 0.22 -0.37 16 9 C -0.11 -1.28 10.05 22.27 0.22 -1.06 16 10 C -0.06 -1.06 9.56 22.27 0.21 -0.85 16 11 C -0.07 -1.85 6.80 36.37 0.25 -1.60 16 12 N 0.03 1.01 4.45 -46.47 -0.21 0.80 16 13 O -0.19 -5.94 18.47 18.89 0.35 -5.59 16 14 O -0.18 -6.47 13.07 18.89 0.25 -6.22 16 15 N -0.67 -26.12 5.74 -491.56 -2.82 -28.94 16 16 C 0.10 4.65 5.12 86.31 0.44 5.09 16 17 C 0.04 1.75 1.91 -52.92 -0.10 1.64 16 18 C -0.49 -26.29 9.01 25.60 0.23 -26.06 16 19 H 0.05 2.53 7.87 -2.91 -0.02 2.51 16 20 C 0.04 2.18 5.15 84.66 0.44 2.62 16 21 N -0.90 -50.40 10.86 21.45 0.23 -50.16 16 22 Si 0.94 42.88 29.57 68.60 2.03 44.91 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 26 C -0.21 -9.66 9.88 30.60 0.30 -9.36 16 27 C -0.19 -7.68 9.50 30.60 0.29 -7.39 16 28 H 0.07 1.71 8.13 -2.38 -0.02 1.69 16 29 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.04 1.36 7.44 -2.39 -0.02 1.34 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 2.07 5.91 -2.38 -0.01 2.06 16 33 H 0.06 2.44 6.33 -2.38 -0.02 2.42 16 34 H 0.08 2.96 7.55 -2.39 -0.02 2.94 16 35 H 0.15 3.02 8.02 -2.91 -0.02 3.00 16 36 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 37 H 0.19 0.54 8.06 -2.91 -0.02 0.51 16 38 H 0.16 2.39 7.63 -2.91 -0.02 2.37 16 39 H 0.33 12.00 7.98 -89.70 -0.72 11.29 16 40 H -0.01 -0.62 7.22 -2.39 -0.02 -0.64 16 41 H 0.10 5.13 5.25 -2.39 -0.01 5.11 16 42 H 0.26 13.99 8.32 -92.71 -0.77 13.21 16 43 H 0.07 3.00 8.10 -2.39 -0.02 2.98 16 44 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 45 H 0.08 3.10 8.14 -2.38 -0.02 3.08 16 46 H 0.08 3.11 8.13 -2.39 -0.02 3.09 16 Total: -1.00 -64.27 376.35 3.76 -60.51 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.27 Total: 30.99 kcal Atomic # 6 Polarization: -49.95 SS G_CDS: 3.66 Total: -46.29 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -2.80 Total: -78.30 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.60 Total: -11.81 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -64.27 3.76 -60.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430755402.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.644 kcal (2) G-P(sol) polarization free energy of solvation -64.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds