Wall clock time and date at job start Fri Apr 10 2020 23:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 N 1.46500 * 109.47498 * 179.97438 * 3 2 1 5 5 C 1.34259 * 125.75377 * 124.71574 * 4 3 2 6 6 C 1.38042 * 107.41267 * 179.90553 * 5 4 3 7 7 C 1.47437 * 126.41234 * 180.13662 * 6 5 4 8 8 O 1.21606 * 119.99665 * 0.28487 * 7 6 5 9 9 N 1.34773 * 120.00192 * 180.28634 * 7 6 5 10 10 C 1.46500 * 120.00249 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47018 * 179.97438 * 10 9 7 12 12 H 1.09003 * 115.51959 * 29.58489 * 11 10 9 13 13 C 1.52994 * 117.44208 * 244.23479 * 11 10 9 14 14 H 1.08997 * 119.54381 * 4.12359 * 13 11 10 15 15 C 1.57698 * 116.11278 * 161.63895 * 13 11 10 16 16 N 1.48152 * 104.67278 * 87.30800 * 15 13 11 17 17 C 1.36939 * 127.83700 * 139.77097 * 16 15 13 18 18 H 1.07995 * 120.00203 * 344.34427 * 17 16 15 19 19 C 1.38812 * 119.99792 * 164.33600 * 17 16 15 20 20 N 1.31614 * 120.00151 * 350.58281 * 19 17 16 21 21 Si 1.86805 * 119.99596 * 170.57507 * 19 17 16 22 22 H 1.48496 * 109.46878 * 60.00592 * 21 19 17 23 23 H 1.48506 * 109.46677 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47377 * 300.00088 * 21 19 17 25 25 C 1.48144 * 104.32643 * 319.77798 * 16 15 13 26 26 C 1.53000 * 117.43997 * 174.99791 * 11 10 9 27 27 H 1.09000 * 119.54528 * 355.87923 * 26 11 10 28 28 C 1.41286 * 107.17568 * 0.35825 * 6 5 4 29 29 N 1.30453 * 108.01923 * 359.77955 * 28 6 5 30 30 H 1.09003 * 109.46906 * 60.00240 * 1 2 3 31 31 H 1.09004 * 109.47082 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47235 * 300.00346 * 1 2 3 33 33 H 1.08996 * 109.47730 * 240.00221 * 2 1 3 34 34 H 1.09003 * 109.46906 * 119.99760 * 2 1 3 35 35 H 1.09009 * 109.46773 * 59.99718 * 3 2 1 36 36 H 1.08997 * 109.47516 * 300.00153 * 3 2 1 37 37 H 1.07997 * 126.28967 * 0.02562 * 5 4 3 38 38 H 0.97009 * 119.99718 * 359.97438 * 9 7 6 39 39 H 1.09007 * 109.46692 * 299.99672 * 10 9 7 40 40 H 1.08994 * 109.47318 * 59.99410 * 10 9 7 41 41 H 1.08999 * 110.92050 * 328.23522 * 15 13 11 42 42 H 1.08996 * 109.93755 * 205.89059 * 15 13 11 43 43 H 0.97002 * 120.00164 * 180.02562 * 20 19 17 44 44 H 1.08996 * 110.40690 * 280.79902 * 25 16 15 45 45 H 1.09000 * 110.40883 * 158.36397 * 25 16 15 46 46 H 1.07997 * 125.99288 * 179.77947 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2898 2.0630 -0.8947 6 6 5.6000 1.8175 -0.5359 7 6 6.8043 2.3050 -1.2328 8 8 6.6934 2.9999 -2.2245 9 7 8.0281 1.9804 -0.7707 10 6 9.2248 2.4653 -1.4628 11 6 10.4734 1.9579 -0.7388 12 1 10.3623 1.0038 -0.2235 13 6 11.3900 3.0019 -0.0979 14 1 11.1010 4.0527 -0.1134 15 6 12.3915 2.4677 0.9969 16 7 13.5873 2.0393 0.2345 17 6 14.9037 2.2103 0.5708 18 1 15.1769 2.9164 1.3410 19 6 15.8869 1.4761 -0.0781 20 7 15.5493 0.4881 -0.8795 21 14 17.6892 1.8903 0.1860 22 1 18.0245 1.7455 1.6254 23 1 18.5319 0.9660 -0.6145 24 1 17.9437 3.2888 -0.2433 25 6 13.0360 1.3839 -0.9744 26 6 11.8305 2.2605 -1.3772 27 1 11.8697 2.7591 -2.3457 28 6 5.5708 1.0073 0.6213 29 7 4.3222 0.7909 0.9310 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9564 -0.8899 37 1 3.9572 2.6482 -1.7392 38 1 8.1165 1.4264 0.0207 39 1 9.2248 2.0978 -2.4891 40 1 9.2255 3.5552 -1.4672 41 1 11.9631 1.6238 1.5376 42 1 12.6488 3.2701 1.6883 43 1 16.2363 -0.0252 -1.3327 44 1 12.7083 0.3708 -0.7414 45 1 13.7791 1.3701 -1.7716 46 1 6.4313 0.6329 1.1557 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978814295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:50:16 Heat of formation + Delta-G solvation = 70.010774 kcal Electronic energy + Delta-G solvation = -25168.649735 eV Core-core repulsion = 21481.632750 eV Total energy + Delta-G solvation = -3687.016985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.36460 -40.60257 -39.79945 -36.31043 -36.27229 -34.92851 -32.87233 -32.49957 -31.33204 -29.00679 -28.64035 -27.46760 -26.37586 -23.69864 -23.19135 -22.63527 -21.79909 -21.49991 -20.87957 -20.63847 -18.95662 -18.75646 -17.15897 -16.95340 -16.69635 -16.67289 -16.17270 -15.87344 -15.67310 -15.36900 -15.16310 -14.90247 -14.57555 -14.38805 -14.19098 -13.96310 -13.77575 -13.32443 -13.20111 -13.15148 -12.90792 -12.83530 -12.67183 -12.38281 -12.30114 -12.09316 -11.94279 -11.86574 -11.73207 -11.67281 -11.05645 -10.86591 -10.66934 -10.56985 -10.51250 -10.07527 -9.60490 -8.88593 -7.90307 -5.26226 0.55117 1.18249 1.39521 1.47155 1.50583 1.56964 2.26352 2.48915 2.50007 2.81486 3.28047 3.43318 3.66510 3.74410 3.79701 3.89992 3.90609 3.95561 4.11874 4.24069 4.27494 4.31609 4.32192 4.36673 4.53060 4.58521 4.61064 4.68391 4.76401 4.81509 4.85846 4.96151 5.04825 5.12367 5.15924 5.26519 5.35948 5.37885 5.43158 5.46660 5.54717 5.56161 5.68976 5.89051 6.19861 6.51126 6.68213 7.02820 7.32433 7.70411 8.48986 9.23353 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.038338 B = 0.001822 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.178262 B =15360.859672 C =15623.549399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.120 3.880 4 N -0.357 5.357 5 C 0.132 3.868 6 C -0.315 4.315 7 C 0.595 3.405 8 O -0.595 6.595 9 N -0.711 5.711 10 C 0.166 3.834 11 C -0.112 4.112 12 H 0.110 0.890 13 C -0.158 4.158 14 H 0.129 0.871 15 C 0.149 3.851 16 N -0.621 5.621 17 C -0.243 4.243 18 H 0.080 0.920 19 C -0.062 4.062 20 N -0.947 5.947 21 Si 0.979 3.021 22 H -0.274 1.274 23 H -0.294 1.294 24 H -0.278 1.278 25 C 0.190 3.810 26 C -0.179 4.179 27 H 0.111 0.889 28 C 0.085 3.915 29 N -0.321 5.321 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.128 0.872 37 H 0.207 0.793 38 H 0.413 0.587 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.032 0.968 42 H 0.054 0.946 43 H 0.250 0.750 44 H 0.003 0.997 45 H 0.050 0.950 46 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.132 1.633 1.623 31.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C 0.001 3.999 4 N -0.135 5.135 5 C -0.021 4.021 6 C -0.331 4.331 7 C 0.384 3.616 8 O -0.477 6.477 9 N -0.362 5.362 10 C 0.042 3.958 11 C -0.131 4.131 12 H 0.128 0.872 13 C -0.177 4.177 14 H 0.146 0.854 15 C 0.024 3.976 16 N -0.345 5.345 17 C -0.371 4.371 18 H 0.098 0.902 19 C -0.256 4.256 20 N -0.595 5.595 21 Si 0.807 3.193 22 H -0.200 1.200 23 H -0.220 1.220 24 H -0.204 1.204 25 C 0.064 3.936 26 C -0.199 4.199 27 H 0.129 0.871 28 C -0.103 4.103 29 N -0.140 5.140 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.146 0.854 37 H 0.224 0.776 38 H 0.250 0.750 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.050 0.950 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.021 0.979 45 H 0.069 0.931 46 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -31.903 1.461 1.752 31.985 hybrid contribution 2.034 0.001 -0.283 2.053 sum -29.870 1.462 1.469 29.941 Atomic orbital electron populations 1.21686 0.92738 1.02892 1.03085 1.21734 0.97747 0.94892 1.02589 1.22321 0.71511 0.99779 1.06270 1.48904 1.08016 1.37082 1.19530 1.23340 0.89849 0.94437 0.94430 1.20204 0.93250 1.15275 1.04323 1.17482 0.82883 0.78606 0.82626 1.90744 1.87515 1.41153 1.28289 1.45642 1.04563 1.53929 1.32091 1.20648 0.81273 0.98677 0.95173 1.22433 0.89385 0.99634 1.01635 0.87204 1.24640 1.00415 0.97682 0.95012 0.85351 1.21879 0.86482 0.96670 0.92591 1.45457 1.00961 1.67580 1.20500 1.19347 0.81797 1.17175 1.18824 0.90215 1.25728 1.02415 0.96769 1.00659 1.70087 1.32847 1.22032 1.34489 0.85148 0.79239 0.77234 0.77673 1.19984 1.21983 1.20394 1.20805 0.91393 0.91569 0.89825 1.23868 0.93996 1.04394 0.97663 0.87121 1.24474 0.95936 0.95302 0.94576 1.77124 1.02298 1.20044 1.14579 0.91132 0.92005 0.91615 0.92200 0.92102 0.88260 0.85377 0.77631 0.75005 0.91462 0.91443 0.95014 0.92752 0.94140 0.97924 0.93101 0.77136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 71.98 0.71 0.07 16 2 C -0.13 -1.10 6.11 30.59 0.19 -0.92 16 3 C 0.12 0.90 6.49 86.38 0.56 1.46 16 4 N -0.36 -5.37 3.65 -346.29 -1.26 -6.63 16 5 C 0.13 2.17 11.25 84.28 0.95 3.12 16 6 C -0.32 -6.36 6.13 -20.15 -0.12 -6.48 16 7 C 0.59 14.86 7.81 86.67 0.68 15.54 16 8 O -0.59 -19.15 16.90 -4.05 -0.07 -19.22 16 9 N -0.71 -15.52 5.55 -466.37 -2.59 -18.11 16 10 C 0.17 4.19 5.95 86.38 0.51 4.70 16 11 C -0.11 -3.18 5.34 -10.80 -0.06 -3.24 16 12 H 0.11 3.05 8.04 -2.39 -0.02 3.03 16 13 C -0.16 -5.19 7.03 -8.70 -0.06 -5.25 16 14 H 0.13 3.74 8.12 -2.39 -0.02 3.72 16 15 C 0.15 6.03 7.10 87.73 0.62 6.65 16 16 N -0.62 -32.13 3.38 -681.39 -2.30 -34.43 16 17 C -0.24 -13.69 10.35 84.03 0.87 -12.82 16 18 H 0.08 4.29 7.85 -2.91 -0.02 4.27 16 19 C -0.06 -3.54 5.40 84.86 0.46 -3.08 16 20 N -0.95 -57.18 10.88 21.65 0.24 -56.94 16 21 Si 0.98 45.65 29.56 68.60 2.03 47.68 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 C 0.19 9.31 5.70 86.54 0.49 9.80 16 26 C -0.18 -6.62 6.77 -9.88 -0.07 -6.69 16 27 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 28 C 0.08 1.49 11.50 85.65 0.99 2.47 16 29 N -0.32 -6.15 12.33 -56.28 -0.69 -6.85 16 30 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.06 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.13 0.23 8.06 -2.39 -0.02 0.22 16 37 H 0.21 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.41 6.86 7.36 -92.70 -0.68 6.18 16 39 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.07 1.77 7.94 -2.39 -0.02 1.75 16 41 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 44 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.05 2.85 6.53 -2.39 -0.02 2.84 16 46 H 0.21 2.42 7.50 -2.91 -0.02 2.40 16 Total: -1.00 -75.65 383.73 2.36 -73.29 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.29 Total: 15.86 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 6.72 Total: 5.34 kcal Atomic # 7 Polarization: -116.35 SS G_CDS: -6.61 Total: -122.96 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.07 Total: -19.22 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -75.65 2.36 -73.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978814295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.304 kcal (2) G-P(sol) polarization free energy of solvation -75.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds