Wall clock time and date at job start Fri Apr 10 2020 23:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47111 * 2 1 4 4 C 1.50699 * 109.47004 * 180.02562 * 3 2 1 5 5 N 1.30453 * 125.98690 * 269.95684 * 4 3 2 6 6 N 1.39927 * 108.89676 * 179.78151 * 5 4 3 7 7 H 0.96999 * 125.75834 * 180.29294 * 6 5 4 8 8 C 1.34261 * 108.49184 * 0.42762 * 6 5 4 9 9 C 1.38041 * 107.41531 * 359.58180 * 8 6 5 10 10 C 1.47427 * 126.41260 * 180.28806 * 9 8 6 11 11 O 1.21604 * 120.00149 * 179.97438 * 10 9 8 12 12 N 1.34778 * 120.00029 * 359.97077 * 10 9 8 13 13 C 1.46501 * 119.99941 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.47154 * 180.02562 * 13 12 10 15 15 C 1.29452 * 117.69505 * 94.99840 * 14 13 12 16 16 C 1.50322 * 123.65291 * 180.85965 * 15 14 13 17 17 N 1.47011 * 109.16478 * 349.02288 * 16 15 14 18 18 C 1.36935 * 121.37692 * 222.97142 * 17 16 15 19 19 H 1.07991 * 120.00177 * 155.96804 * 18 17 16 20 20 C 1.38815 * 119.99728 * 335.96767 * 18 17 16 21 21 N 1.31617 * 120.00299 * 344.52090 * 20 18 17 22 22 Si 1.86799 * 119.99934 * 164.51795 * 20 18 17 23 23 H 1.48499 * 109.47204 * 90.00019 * 22 20 18 24 24 H 1.48500 * 109.47351 * 209.99959 * 22 20 18 25 25 H 1.48502 * 109.46990 * 330.00041 * 22 20 18 26 26 C 1.47338 * 117.24619 * 42.94442 * 17 16 15 27 27 C 1.49969 * 117.69260 * 274.73724 * 14 13 12 28 28 H 1.09003 * 109.47198 * 59.99829 * 1 2 3 29 29 H 1.08995 * 109.47344 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47267 * 300.00145 * 1 2 3 31 31 H 1.08996 * 109.47143 * 240.00168 * 2 1 3 32 32 H 1.08997 * 109.47289 * 119.99713 * 2 1 3 33 33 H 1.08996 * 109.46980 * 60.00068 * 3 2 1 34 34 H 1.08997 * 109.46809 * 300.00007 * 3 2 1 35 35 H 1.08009 * 126.28743 * 179.84735 * 8 6 5 36 36 H 0.97001 * 119.99883 * 0.02562 * 12 10 9 37 37 H 1.09003 * 109.47403 * 299.99967 * 13 12 10 38 38 H 1.09006 * 109.47275 * 60.00079 * 13 12 10 39 39 H 1.08004 * 118.17180 * 0.87976 * 15 14 13 40 40 H 1.09004 * 109.52441 * 108.92837 * 16 15 14 41 41 H 1.08994 * 109.52216 * 229.12027 * 16 15 14 42 42 H 0.96992 * 120.00712 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.77856 * 57.81697 * 26 17 16 44 44 H 1.09007 * 109.77417 * 178.62035 * 26 17 16 45 45 H 1.09000 * 109.31634 * 281.29353 * 27 14 13 46 46 H 1.09008 * 109.31276 * 40.72004 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3140 1.4432 1.0546 6 7 5.6513 1.4378 0.6428 7 1 6.4246 1.4331 1.2283 8 6 5.6836 1.4434 -0.6994 9 6 4.3768 1.4426 -1.1441 10 6 3.9306 1.4416 -2.5492 11 8 2.7428 1.4405 -2.8100 12 7 4.8391 1.4419 -3.5448 13 6 4.3956 1.4413 -4.9411 14 6 5.5978 1.4412 -5.8500 15 6 6.0176 0.2992 -6.2921 16 6 7.2132 0.1419 -7.1895 17 7 7.6318 1.4659 -7.6723 18 6 7.9879 1.6686 -8.9789 19 1 7.9161 2.6556 -9.4113 20 6 8.4412 0.6053 -9.7476 21 7 8.8189 -0.5134 -9.1661 22 14 8.5150 0.7622 -11.6076 23 1 9.8427 1.2940 -12.0071 24 1 8.3101 -0.5725 -12.2255 25 1 7.4510 1.6899 -12.0687 26 6 7.6519 2.5659 -6.6922 27 6 6.2197 2.7645 -6.1832 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 6.5693 1.4437 -1.3175 36 1 5.7865 1.4424 -3.3368 37 1 3.7964 0.5510 -5.1317 38 1 3.7954 2.3310 -5.1321 39 1 5.4786 -0.5900 -6.0001 40 1 8.0295 -0.3172 -6.6318 41 1 6.9508 -0.4890 -8.0386 42 1 9.1359 -1.2562 -9.7032 43 1 8.3101 2.3085 -5.8623 44 1 8.0016 3.4804 -7.1714 45 1 5.6253 3.2590 -6.9516 46 1 6.2399 3.3886 -5.2897 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000896415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:50:29 Heat of formation + Delta-G solvation = 37.644985 kcal Electronic energy + Delta-G solvation = -26131.266605 eV Core-core repulsion = 22442.846134 eV Total energy + Delta-G solvation = -3688.420471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.42784 -40.30701 -39.17208 -36.50368 -35.99321 -34.48546 -32.75143 -32.54890 -31.51997 -31.14977 -28.49836 -27.96040 -25.95489 -24.42153 -23.88108 -22.93230 -22.69937 -21.32482 -20.63367 -19.63015 -19.35102 -17.76370 -17.18128 -17.00671 -16.64241 -16.37307 -16.03121 -15.68602 -15.61405 -15.35668 -15.19380 -15.16733 -14.79078 -14.34338 -14.24291 -13.93837 -13.85187 -13.54594 -13.24251 -12.90614 -12.84654 -12.77142 -12.56110 -12.44981 -12.22565 -12.16247 -12.07558 -11.96964 -11.68304 -11.56394 -11.23501 -10.88595 -10.66309 -10.51536 -10.12315 -9.71089 -9.61067 -8.72446 -7.87229 -5.27653 0.55918 1.09632 1.23027 1.47309 1.49591 1.58390 1.82585 2.48694 2.52348 2.55858 3.30314 3.46716 3.66096 3.74830 3.90714 4.02497 4.12856 4.18266 4.23127 4.37815 4.44749 4.49720 4.58124 4.60959 4.72812 4.81971 4.86136 4.88881 4.90041 4.96833 5.01255 5.13642 5.14819 5.25422 5.34657 5.41431 5.43047 5.45675 5.51877 5.52776 5.63528 5.81590 6.20990 6.26894 6.35820 6.49851 6.73134 7.15573 7.36743 7.86137 8.39092 9.21241 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.024387 B = 0.002418 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.876666 B =11577.550510 C =12083.018578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.043 4.043 4 C 0.124 3.876 5 N -0.323 5.323 6 N -0.447 5.447 7 H 0.461 0.539 8 C 0.134 3.866 9 C -0.317 4.317 10 C 0.590 3.410 11 O -0.579 6.579 12 N -0.710 5.710 13 C 0.171 3.829 14 C -0.136 4.136 15 C -0.142 4.142 16 C 0.205 3.795 17 N -0.616 5.616 18 C -0.255 4.255 19 H 0.069 0.931 20 C -0.054 4.054 21 N -0.939 5.939 22 Si 0.965 3.035 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.273 1.273 26 C 0.139 3.861 27 C -0.084 4.084 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.228 0.772 36 H 0.410 0.590 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.111 0.889 40 H 0.016 0.984 41 H 0.055 0.945 42 H 0.249 0.751 43 H 0.032 0.968 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.001 3.957 20.966 22.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.082 4.082 4 C -0.044 4.044 5 N -0.145 5.145 6 N -0.153 5.153 7 H 0.309 0.691 8 C -0.020 4.020 9 C -0.332 4.332 10 C 0.379 3.621 11 O -0.460 6.460 12 N -0.361 5.361 13 C 0.047 3.953 14 C -0.137 4.137 15 C -0.163 4.163 16 C 0.080 3.920 17 N -0.340 5.340 18 C -0.385 4.385 19 H 0.087 0.913 20 C -0.249 4.249 21 N -0.586 5.586 22 Si 0.793 3.207 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.198 1.198 26 C 0.014 3.986 27 C -0.123 4.123 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.244 0.756 36 H 0.246 0.754 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.129 0.871 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.737 3.851 21.973 23.958 hybrid contribution 1.225 -0.382 -1.815 2.222 sum -7.513 3.468 20.158 21.790 Atomic orbital electron populations 1.21719 0.94197 1.02241 1.02214 1.21296 0.96967 0.94916 1.01160 1.20181 0.85452 0.98866 1.03751 1.22615 0.97514 0.95088 0.89144 1.77107 0.87577 1.27197 1.22643 1.46152 1.07506 1.55668 1.05932 0.69091 1.23738 0.99136 0.93356 0.85801 1.20290 0.93624 1.25749 0.93571 1.17503 0.85232 0.75097 0.84246 1.90719 1.17788 1.52665 1.84847 1.45787 1.10092 1.75191 1.05045 1.20186 0.93989 1.01788 0.79299 1.20596 0.97741 0.95341 1.00020 1.22932 0.97862 0.97874 0.97593 1.19399 0.90881 0.87226 0.94489 1.44413 1.77286 1.06077 1.06212 1.19491 1.36105 0.95546 0.87382 0.91289 1.25703 0.99533 0.97336 1.02319 1.70149 1.47829 1.05531 1.35061 0.85307 0.77886 0.76561 0.80899 1.21126 1.22043 1.19785 1.21192 0.94683 0.91045 0.91728 1.20730 0.96613 0.94126 1.00797 0.92985 0.92008 0.91521 0.93545 0.92061 0.89664 0.89656 0.75577 0.75408 0.92218 0.91409 0.87090 0.96668 0.92712 0.94159 0.94988 0.92420 0.92046 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.91 71.98 0.71 -1.74 16 2 C -0.10 -2.13 5.92 30.60 0.18 -1.95 16 3 C -0.04 -0.93 5.25 29.85 0.16 -0.78 16 4 C 0.12 2.82 6.52 43.51 0.28 3.10 16 5 N -0.32 -6.66 12.63 -46.68 -0.59 -7.25 16 6 N -0.45 -5.66 7.29 -56.31 -0.41 -6.07 16 7 H 0.46 2.31 8.96 -213.43 -1.91 0.40 16 8 C 0.13 1.70 11.52 84.27 0.97 2.67 16 9 C -0.32 -6.72 6.13 -20.16 -0.12 -6.84 16 10 C 0.59 15.11 7.81 86.66 0.68 15.79 16 11 O -0.58 -18.83 14.92 -4.04 -0.06 -18.89 16 12 N -0.71 -15.73 5.54 -470.08 -2.60 -18.33 16 13 C 0.17 4.52 5.66 85.63 0.48 5.00 16 14 C -0.14 -4.14 5.22 -15.13 -0.08 -4.22 16 15 C -0.14 -5.06 9.47 27.11 0.26 -4.80 16 16 C 0.21 9.55 5.23 85.42 0.45 10.00 16 17 N -0.62 -29.80 3.01 -703.03 -2.11 -31.91 16 18 C -0.26 -13.75 9.71 84.03 0.82 -12.93 16 19 H 0.07 3.61 7.88 -2.92 -0.02 3.59 16 20 C -0.05 -2.98 5.01 84.86 0.43 -2.56 16 21 N -0.94 -54.46 11.08 21.65 0.24 -54.22 16 22 Si 0.97 44.47 29.58 68.60 2.03 46.49 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 C 0.14 5.22 6.59 86.31 0.57 5.79 16 27 C -0.08 -2.54 5.95 29.71 0.18 -2.36 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 34 H 0.08 2.13 6.55 -2.39 -0.02 2.11 16 35 H 0.23 0.86 7.46 -2.91 -0.02 0.83 16 36 H 0.41 6.92 7.39 -92.71 -0.68 6.24 16 37 H 0.06 1.70 7.78 -2.39 -0.02 1.68 16 38 H 0.07 1.84 8.11 -2.38 -0.02 1.82 16 39 H 0.11 3.56 7.73 -2.91 -0.02 3.53 16 40 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.05 2.94 6.41 -2.39 -0.02 2.92 16 42 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 43 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.06 2.13 7.96 -2.38 -0.02 2.11 16 45 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -72.32 377.22 0.85 -71.47 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -1.60 Total: 14.53 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 5.95 Total: 4.17 kcal Atomic # 7 Polarization: -112.31 SS G_CDS: -5.48 Total: -117.79 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.06 Total: -18.89 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -72.32 0.85 -71.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000896415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.118 kcal (2) G-P(sol) polarization free energy of solvation -72.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds