Wall clock time and date at job start Fri Apr 10 2020 23:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47270 * 2 1 4 4 C 1.50706 * 109.47336 * 180.02562 * 3 2 1 5 5 C 1.35361 * 126.38250 * 275.30442 * 4 3 2 6 6 C 1.41505 * 105.50225 * 180.13969 * 5 4 3 7 7 C 1.47705 * 126.52029 * 179.84609 * 6 5 4 8 8 O 1.21571 * 119.99919 * 359.70850 * 7 6 5 9 9 N 1.34773 * 120.00224 * 179.71363 * 7 6 5 10 10 C 1.46494 * 120.00373 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47356 * 179.97438 * 10 9 7 12 12 C 1.29452 * 117.69502 * 95.00329 * 11 10 9 13 13 C 1.50324 * 123.65304 * 180.57901 * 12 11 10 14 14 N 1.47010 * 109.16448 * 349.27777 * 13 12 11 15 15 C 1.36936 * 121.37191 * 222.96712 * 14 13 12 16 16 H 1.08000 * 119.99620 * 155.97016 * 15 14 13 17 17 C 1.38810 * 120.00410 * 335.97307 * 15 14 13 18 18 N 1.31617 * 119.99875 * 344.52041 * 17 15 14 19 19 Si 1.86807 * 119.99988 * 164.51574 * 17 15 14 20 20 H 1.48498 * 109.46876 * 90.00079 * 19 17 15 21 21 H 1.48495 * 109.46847 * 210.00217 * 19 17 15 22 22 H 1.48494 * 109.47077 * 330.00263 * 19 17 15 23 23 C 1.47340 * 117.24864 * 42.94958 * 14 13 12 24 24 C 1.49964 * 117.69115 * 275.22114 * 11 10 9 25 25 N 1.31811 * 106.95908 * 359.58157 * 6 5 4 26 26 N 1.28471 * 110.07436 * 0.26118 * 25 6 5 27 27 H 0.97001 * 124.88039 * 180.02562 * 26 25 6 28 28 H 1.08996 * 109.47048 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46751 * 299.99575 * 1 2 3 30 30 H 1.08995 * 109.47389 * 59.99761 * 1 2 3 31 31 H 1.09005 * 109.46751 * 240.00425 * 2 1 3 32 32 H 1.08998 * 109.47653 * 120.00692 * 2 1 3 33 33 H 1.09005 * 109.46887 * 60.00508 * 3 2 1 34 34 H 1.09001 * 109.47775 * 300.00586 * 3 2 1 35 35 H 1.08004 * 127.25479 * 359.97438 * 5 4 3 36 36 H 0.97004 * 119.99988 * 359.97438 * 9 7 6 37 37 H 1.08999 * 109.46926 * 59.99860 * 10 9 7 38 38 H 1.09000 * 109.47149 * 299.99916 * 10 9 7 39 39 H 1.08003 * 118.17223 * 0.85562 * 12 11 10 40 40 H 1.08995 * 109.52197 * 109.18684 * 13 12 11 41 41 H 1.08999 * 109.51994 * 229.37111 * 13 12 11 42 42 H 0.97002 * 119.99820 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.77806 * 57.81155 * 23 14 13 44 44 H 1.09002 * 109.77678 * 178.61833 * 23 14 13 45 45 H 1.09003 * 109.43742 * 40.82300 * 24 11 10 46 46 H 1.09001 * 109.13695 * 281.43060 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.3505 1.3416 1.0841 6 6 5.6724 1.3916 0.5817 7 6 6.9171 1.3224 1.3739 8 8 6.8624 1.2164 2.5838 9 7 8.1134 1.3768 0.7556 10 6 9.3478 1.3088 1.5414 11 6 10.5362 1.3892 0.6181 12 6 11.0719 2.5521 0.4269 13 6 12.2514 2.7878 -0.4748 14 7 12.8245 1.4924 -0.8683 15 6 14.1784 1.2884 -0.8880 16 1 14.5751 0.2884 -0.7934 17 6 15.0409 2.3668 -1.0294 18 7 14.5805 3.5275 -1.4453 19 14 16.8551 2.1705 -0.6295 20 1 17.5873 1.7435 -1.8487 21 1 17.4000 3.4673 -0.1534 22 1 17.0199 1.1449 0.4316 23 6 11.8819 0.4228 -1.2403 24 6 11.0116 0.1172 -0.0183 25 7 5.5817 1.5059 -0.7283 26 7 4.3476 1.5370 -1.0839 27 1 4.0358 1.6164 -1.9990 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 1.9564 -0.8899 35 1 4.0466 1.2460 2.1161 36 1 8.1570 1.4611 -0.2098 37 1 9.3777 0.3675 2.0903 38 1 9.3770 2.1407 2.2450 39 1 10.6506 3.3994 0.9475 40 1 11.9276 3.3282 -1.3642 41 1 13.0032 3.3730 0.0546 42 1 15.1833 4.2810 -1.5445 43 1 11.2538 0.7556 -2.0666 44 1 12.4343 -0.4704 -1.5324 45 1 10.1517 -0.4770 -0.3276 46 1 11.5953 -0.4490 0.7075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001028734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:50:36 Heat of formation + Delta-G solvation = 59.858892 kcal Electronic energy + Delta-G solvation = -25571.081260 eV Core-core repulsion = 21883.624056 eV Total energy + Delta-G solvation = -3687.457204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.92283 -39.35622 -37.67324 -35.80600 -34.88770 -32.92762 -32.05356 -31.31060 -30.74699 -29.68678 -27.24005 -26.76675 -24.73959 -23.26097 -22.64404 -22.37917 -21.28024 -21.03402 -20.03761 -17.99246 -17.67837 -17.14776 -16.02547 -15.81178 -15.60760 -15.53876 -15.11318 -14.68203 -14.42315 -14.03126 -13.94190 -13.74886 -13.61940 -13.49260 -13.28130 -12.87957 -12.69935 -12.22628 -12.01286 -11.99433 -11.79529 -11.53638 -11.32940 -11.29807 -11.01097 -10.89941 -10.71167 -10.40178 -10.31199 -10.11630 -9.81215 -9.61855 -9.57279 -9.22343 -8.88219 -8.66630 -8.03108 -6.72992 -5.78711 -3.17201 1.43581 1.86513 2.52293 2.69879 3.38926 3.42767 3.45851 3.48491 3.56367 4.17651 4.27827 4.44809 4.50588 4.53292 4.82480 4.92911 5.12508 5.18880 5.25376 5.28070 5.37402 5.38464 5.42908 5.51390 5.55571 5.61373 5.73664 5.78574 5.86783 5.97780 6.10317 6.15561 6.21025 6.37688 6.49611 6.56973 6.70902 6.76080 6.89902 7.19777 7.28325 7.35232 7.50547 7.74269 7.77901 7.84511 8.28501 8.39211 9.20647 9.83531 10.41777 11.31829 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.034935 B = 0.002049 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.303092 B =13658.682130 C =13856.856738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.050 4.050 4 C 0.014 3.986 5 C -0.175 4.175 6 C -0.007 4.007 7 C 0.598 3.402 8 O -0.539 6.539 9 N -0.706 5.706 10 C 0.157 3.843 11 C -0.166 4.166 12 C -0.124 4.124 13 C 0.194 3.806 14 N -0.595 5.595 15 C -0.245 4.245 16 H 0.068 0.932 17 C -0.002 4.002 18 N -0.910 5.910 19 Si 0.904 3.096 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.144 3.856 24 C -0.090 4.090 25 N -0.255 5.255 26 N -0.380 5.380 27 H 0.444 0.556 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.161 0.839 36 H 0.408 0.592 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.041 0.959 41 H 0.093 0.907 42 H 0.254 0.746 43 H 0.023 0.977 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.287 -4.269 1.044 27.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.089 4.089 4 C -0.112 4.112 5 C -0.203 4.203 6 C -0.168 4.168 7 C 0.382 3.618 8 O -0.415 6.415 9 N -0.357 5.357 10 C 0.035 3.965 11 C -0.167 4.167 12 C -0.144 4.144 13 C 0.069 3.931 14 N -0.318 5.318 15 C -0.374 4.374 16 H 0.086 0.914 17 C -0.200 4.200 18 N -0.555 5.555 19 Si 0.734 3.266 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.017 3.983 24 C -0.129 4.129 25 N -0.091 5.091 26 N -0.094 5.094 27 H 0.288 0.712 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.179 0.821 36 H 0.243 0.757 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.059 0.941 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.041 0.959 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -26.485 -4.122 0.995 26.823 hybrid contribution 0.307 0.099 -0.067 0.330 sum -26.178 -4.023 0.927 26.501 Atomic orbital electron populations 1.21780 0.95185 1.02084 1.02012 1.21552 0.96034 0.95451 1.02944 1.20226 0.86249 0.98334 1.04091 1.21426 0.95038 1.07382 0.87362 1.21501 0.90413 1.08604 0.99809 1.22008 0.95326 1.09640 0.89867 1.16926 0.81755 0.76756 0.86330 1.90784 1.86894 1.50609 1.13199 1.46065 1.04992 1.72940 1.11680 1.20512 0.81157 1.02015 0.92862 1.20478 0.97661 0.96344 1.02174 1.23285 0.98095 0.95891 0.97173 1.19761 0.90827 0.88289 0.94217 1.44123 1.01793 1.08785 1.77120 1.19174 0.81001 0.93667 1.43602 0.91386 1.24986 0.98049 0.96772 1.00150 1.70010 1.34408 1.01915 1.49197 0.86258 0.85140 0.76966 0.78201 1.21468 1.21579 1.20534 1.20954 0.91708 0.92660 0.92946 1.20753 0.98691 0.94216 0.99262 1.73604 1.01453 1.18907 1.15132 1.43320 1.02949 1.53265 1.09865 0.71182 0.92397 0.92371 0.92663 0.91949 0.91094 0.88971 0.90588 0.82098 0.75689 0.91351 0.91415 0.88740 0.94115 0.88867 0.93628 0.95907 0.92459 0.92815 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.91 37.16 0.37 -0.19 16 2 C -0.12 -0.56 5.92 -26.73 -0.16 -0.72 16 3 C -0.05 -0.23 5.77 -27.88 -0.16 -0.39 16 4 C 0.01 0.11 6.48 -82.21 -0.53 -0.42 16 5 C -0.18 -1.92 10.73 -39.36 -0.42 -2.34 16 6 C -0.01 -0.10 7.13 -82.76 -0.59 -0.69 16 7 C 0.60 9.31 7.82 -12.39 -0.10 9.22 16 8 O -0.54 -9.81 16.93 5.30 0.09 -9.72 16 9 N -0.71 -10.49 5.54 -62.48 -0.35 -10.83 16 10 C 0.16 2.48 5.66 -5.20 -0.03 2.45 16 11 C -0.17 -2.94 5.23 -100.99 -0.53 -3.47 16 12 C -0.12 -2.41 9.47 -35.78 -0.34 -2.74 16 13 C 0.19 4.63 5.23 -5.10 -0.03 4.60 16 14 N -0.59 -14.95 3.01 -173.67 -0.52 -15.47 16 15 C -0.25 -6.74 9.71 -15.06 -0.15 -6.89 16 16 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 17 C 0.00 -0.05 5.01 -17.43 -0.09 -0.14 16 18 N -0.91 -26.27 11.08 55.49 0.61 -25.66 16 19 Si 0.90 21.79 29.58 -169.99 -5.03 16.77 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.14 3.00 6.58 -3.53 -0.02 2.98 16 24 C -0.09 -1.61 5.94 -28.18 -0.17 -1.78 16 25 N -0.26 -3.01 11.92 33.42 0.40 -2.62 16 26 N -0.38 -3.12 6.83 33.50 0.23 -2.89 16 27 H 0.44 2.05 8.96 -190.44 -1.71 0.35 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.16 1.62 8.06 -52.48 -0.42 1.20 16 36 H 0.41 5.77 8.19 -40.82 -0.33 5.44 16 37 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 38 H 0.07 1.09 7.78 -51.93 -0.40 0.68 16 39 H 0.09 1.66 7.73 -52.48 -0.41 1.25 16 40 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.09 2.47 6.41 -51.93 -0.33 2.14 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -32.76 381.75 -10.39 -43.16 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -8.64 Total: 2.03 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -2.94 Total: -0.51 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 0.37 Total: -57.47 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.76 -10.39 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001028734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.015 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds