Wall clock time and date at job start Fri Apr 10 2020 23:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47270 * 2 1 4 4 C 1.50706 * 109.47336 * 180.02562 * 3 2 1 5 5 C 1.35361 * 126.38250 * 275.30442 * 4 3 2 6 6 C 1.41505 * 105.50225 * 180.13969 * 5 4 3 7 7 C 1.47705 * 126.52029 * 179.84609 * 6 5 4 8 8 O 1.21571 * 119.99919 * 359.70850 * 7 6 5 9 9 N 1.34773 * 120.00224 * 179.71363 * 7 6 5 10 10 C 1.46494 * 120.00373 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47356 * 179.97438 * 10 9 7 12 12 C 1.29452 * 117.69502 * 95.00329 * 11 10 9 13 13 C 1.50324 * 123.65304 * 180.57901 * 12 11 10 14 14 N 1.47010 * 109.16448 * 349.27777 * 13 12 11 15 15 C 1.36936 * 121.37191 * 222.96712 * 14 13 12 16 16 H 1.08000 * 119.99620 * 155.97016 * 15 14 13 17 17 C 1.38810 * 120.00410 * 335.97307 * 15 14 13 18 18 N 1.31617 * 119.99875 * 344.52041 * 17 15 14 19 19 Si 1.86807 * 119.99988 * 164.51574 * 17 15 14 20 20 H 1.48498 * 109.46876 * 90.00079 * 19 17 15 21 21 H 1.48495 * 109.46847 * 210.00217 * 19 17 15 22 22 H 1.48494 * 109.47077 * 330.00263 * 19 17 15 23 23 C 1.47340 * 117.24864 * 42.94958 * 14 13 12 24 24 C 1.49964 * 117.69115 * 275.22114 * 11 10 9 25 25 N 1.31811 * 106.95908 * 359.58157 * 6 5 4 26 26 N 1.28471 * 110.07436 * 0.26118 * 25 6 5 27 27 H 0.97001 * 124.88039 * 180.02562 * 26 25 6 28 28 H 1.08996 * 109.47048 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46751 * 299.99575 * 1 2 3 30 30 H 1.08995 * 109.47389 * 59.99761 * 1 2 3 31 31 H 1.09005 * 109.46751 * 240.00425 * 2 1 3 32 32 H 1.08998 * 109.47653 * 120.00692 * 2 1 3 33 33 H 1.09005 * 109.46887 * 60.00508 * 3 2 1 34 34 H 1.09001 * 109.47775 * 300.00586 * 3 2 1 35 35 H 1.08004 * 127.25479 * 359.97438 * 5 4 3 36 36 H 0.97004 * 119.99988 * 359.97438 * 9 7 6 37 37 H 1.08999 * 109.46926 * 59.99860 * 10 9 7 38 38 H 1.09000 * 109.47149 * 299.99916 * 10 9 7 39 39 H 1.08003 * 118.17223 * 0.85562 * 12 11 10 40 40 H 1.08995 * 109.52197 * 109.18684 * 13 12 11 41 41 H 1.08999 * 109.51994 * 229.37111 * 13 12 11 42 42 H 0.97002 * 119.99820 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.77806 * 57.81155 * 23 14 13 44 44 H 1.09002 * 109.77678 * 178.61833 * 23 14 13 45 45 H 1.09003 * 109.43742 * 40.82300 * 24 11 10 46 46 H 1.09001 * 109.13695 * 281.43060 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.3505 1.3416 1.0841 6 6 5.6724 1.3916 0.5817 7 6 6.9171 1.3224 1.3739 8 8 6.8624 1.2164 2.5838 9 7 8.1134 1.3768 0.7556 10 6 9.3478 1.3088 1.5414 11 6 10.5362 1.3892 0.6181 12 6 11.0719 2.5521 0.4269 13 6 12.2514 2.7878 -0.4748 14 7 12.8245 1.4924 -0.8683 15 6 14.1784 1.2884 -0.8880 16 1 14.5751 0.2884 -0.7934 17 6 15.0409 2.3668 -1.0294 18 7 14.5805 3.5275 -1.4453 19 14 16.8551 2.1705 -0.6295 20 1 17.5873 1.7435 -1.8487 21 1 17.4000 3.4673 -0.1534 22 1 17.0199 1.1449 0.4316 23 6 11.8819 0.4228 -1.2403 24 6 11.0116 0.1172 -0.0183 25 7 5.5817 1.5059 -0.7283 26 7 4.3476 1.5370 -1.0839 27 1 4.0358 1.6164 -1.9990 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 1.9564 -0.8899 35 1 4.0466 1.2460 2.1161 36 1 8.1570 1.4611 -0.2098 37 1 9.3777 0.3675 2.0903 38 1 9.3770 2.1407 2.2450 39 1 10.6506 3.3994 0.9475 40 1 11.9276 3.3282 -1.3642 41 1 13.0032 3.3730 0.0546 42 1 15.1833 4.2810 -1.5445 43 1 11.2538 0.7556 -2.0666 44 1 12.4343 -0.4704 -1.5324 45 1 10.1517 -0.4770 -0.3276 46 1 11.5953 -0.4490 0.7075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001028734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:50:35 Heat of formation + Delta-G solvation = 38.669061 kcal Electronic energy + Delta-G solvation = -25572.000120 eV Core-core repulsion = 21883.624056 eV Total energy + Delta-G solvation = -3688.376064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.71546 -40.62017 -39.28932 -36.44341 -36.21881 -34.57066 -33.09892 -32.46409 -31.84864 -31.41585 -28.73472 -27.37193 -26.33175 -24.69201 -24.18328 -22.88949 -22.70841 -21.92683 -21.16031 -19.49394 -18.69940 -18.33999 -17.31008 -17.08970 -16.90595 -16.83362 -15.96832 -15.89798 -15.79935 -15.37596 -15.23143 -15.02155 -14.73297 -14.55662 -14.39333 -13.98414 -13.92022 -13.61058 -13.27428 -13.04320 -12.93278 -12.79624 -12.58179 -12.45096 -12.24556 -12.12176 -12.11347 -11.90390 -11.71439 -11.53840 -11.41818 -11.23031 -10.68510 -10.51744 -10.08897 -9.95426 -9.67201 -8.75237 -7.88309 -5.29530 0.48414 1.09675 1.15238 1.47014 1.48893 1.58365 1.92072 2.33019 2.41374 2.51504 3.28958 3.38105 3.61314 3.65703 3.84381 3.96171 3.98699 4.18390 4.25491 4.43294 4.46593 4.52252 4.53853 4.66089 4.70494 4.74022 4.83684 4.86518 4.90785 4.95500 5.00038 5.09275 5.20370 5.24373 5.29093 5.34294 5.36280 5.39900 5.47253 5.49053 5.61394 5.75639 6.08882 6.15410 6.33809 6.43589 6.85155 7.11186 7.13341 7.83118 8.37509 9.20476 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.034935 B = 0.002049 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.303092 B =13658.682130 C =13856.856738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.047 4.047 4 C 0.037 3.963 5 C -0.197 4.197 6 C -0.035 4.035 7 C 0.599 3.401 8 O -0.572 6.572 9 N -0.701 5.701 10 C 0.166 3.834 11 C -0.140 4.140 12 C -0.141 4.141 13 C 0.205 3.795 14 N -0.614 5.614 15 C -0.257 4.257 16 H 0.071 0.929 17 C -0.055 4.055 18 N -0.940 5.940 19 Si 0.969 3.031 20 H -0.284 1.284 21 H -0.293 1.293 22 H -0.272 1.272 23 C 0.139 3.861 24 C -0.084 4.084 25 N -0.269 5.269 26 N -0.363 5.363 27 H 0.461 0.539 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.163 0.837 36 H 0.412 0.588 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.113 0.887 40 H 0.014 0.986 41 H 0.059 0.941 42 H 0.250 0.750 43 H 0.025 0.975 44 H 0.061 0.939 45 H 0.085 0.915 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.506 -5.291 0.875 29.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.085 4.085 4 C -0.089 4.089 5 C -0.225 4.225 6 C -0.195 4.195 7 C 0.385 3.615 8 O -0.450 6.450 9 N -0.351 5.351 10 C 0.043 3.957 11 C -0.141 4.141 12 C -0.161 4.161 13 C 0.080 3.920 14 N -0.338 5.338 15 C -0.387 4.387 16 H 0.088 0.912 17 C -0.249 4.249 18 N -0.586 5.586 19 Si 0.797 3.203 20 H -0.211 1.211 21 H -0.220 1.220 22 H -0.197 1.197 23 C 0.014 3.986 24 C -0.123 4.123 25 N -0.106 5.106 26 N -0.080 5.080 27 H 0.309 0.691 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.180 0.820 36 H 0.249 0.751 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.130 0.870 40 H 0.031 0.969 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.043 0.957 44 H 0.079 0.921 45 H 0.103 0.897 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -28.727 -5.169 0.795 29.199 hybrid contribution 0.867 0.349 -0.093 0.940 sum -27.860 -4.819 0.702 28.282 Atomic orbital electron populations 1.21762 0.94267 1.02207 1.02637 1.21517 0.96764 0.95162 1.02345 1.20379 0.83537 0.98774 1.05842 1.21817 0.96358 1.04560 0.86186 1.21676 0.90032 1.09932 1.00891 1.21778 0.95071 1.12085 0.90548 1.17207 0.82408 0.75810 0.86120 1.90756 1.87424 1.52192 1.14606 1.45932 1.04596 1.72850 1.11761 1.20335 0.80655 1.02377 0.92306 1.20598 0.97246 0.95562 1.00697 1.22972 0.97421 0.97546 0.98198 1.19406 0.91419 0.87494 0.93675 1.44396 1.01881 1.09927 1.77617 1.19515 0.82483 0.93830 1.42899 0.91151 1.25751 1.02025 0.96615 1.00551 1.70171 1.35499 1.02487 1.50490 0.85249 0.80337 0.76691 0.78021 1.21076 1.21952 1.19679 1.21134 0.91494 0.91582 0.94433 1.20690 0.99224 0.94528 0.97824 1.73526 1.03177 1.19456 1.14472 1.43422 1.02073 1.51496 1.10965 0.69131 0.92589 0.92059 0.91733 0.92046 0.92300 0.87992 0.88094 0.81982 0.75143 0.90747 0.91462 0.86950 0.96861 0.92314 0.94119 0.95652 0.92080 0.89693 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 71.98 0.71 -0.01 16 2 C -0.12 -0.81 5.92 30.59 0.18 -0.63 16 3 C -0.05 -0.29 5.77 29.85 0.17 -0.11 16 4 C 0.04 0.51 6.48 41.40 0.27 0.78 16 5 C -0.20 -4.09 10.73 22.41 0.24 -3.85 16 6 C -0.04 -0.91 7.13 42.46 0.30 -0.61 16 7 C 0.60 18.27 7.82 86.75 0.68 18.95 16 8 O -0.57 -20.69 16.93 -3.94 -0.07 -20.75 16 9 N -0.70 -19.96 5.54 -469.86 -2.61 -22.56 16 10 C 0.17 5.00 5.66 85.63 0.48 5.49 16 11 C -0.14 -4.79 5.23 -15.14 -0.08 -4.87 16 12 C -0.14 -5.47 9.47 27.11 0.26 -5.22 16 13 C 0.21 10.12 5.23 85.42 0.45 10.57 16 14 N -0.61 -31.26 3.01 -703.37 -2.12 -33.38 16 15 C -0.26 -14.31 9.71 84.03 0.82 -13.49 16 16 H 0.07 3.79 7.88 -2.91 -0.02 3.76 16 17 C -0.05 -3.09 5.01 84.86 0.43 -2.66 16 18 N -0.94 -55.93 11.08 21.65 0.24 -55.69 16 19 Si 0.97 45.40 29.58 68.60 2.03 47.43 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 C 0.14 5.70 6.58 86.25 0.57 6.27 16 24 C -0.08 -2.84 5.94 29.65 0.18 -2.66 16 25 N -0.27 -5.94 11.92 -48.18 -0.57 -6.52 16 26 N -0.36 -5.10 6.83 -47.93 -0.33 -5.43 16 27 H 0.46 2.90 8.96 -219.99 -1.97 0.93 16 28 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.06 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 36 H 0.41 11.09 8.19 -92.71 -0.76 10.33 16 37 H 0.07 2.21 8.11 -2.39 -0.02 2.19 16 38 H 0.07 2.08 7.78 -2.39 -0.02 2.06 16 39 H 0.11 3.93 7.73 -2.91 -0.02 3.90 16 40 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.06 3.26 6.41 -2.39 -0.02 3.25 16 42 H 0.25 14.41 8.31 -92.71 -0.77 13.63 16 43 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.06 2.42 7.96 -2.39 -0.02 2.40 16 45 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -72.11 381.75 0.49 -71.62 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -1.74 Total: 17.35 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 5.65 Total: 7.93 kcal Atomic # 7 Polarization: -118.20 SS G_CDS: -5.38 Total: -123.58 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.07 Total: -20.75 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -72.11 0.49 -71.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001028734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.288 kcal (2) G-P(sol) polarization free energy of solvation -72.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds