Wall clock time and date at job start Fri Apr 10 2020 23:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47128 * 2 1 4 4 N 1.46505 * 109.47271 * 120.00236 * 2 1 3 5 5 C 1.35038 * 124.87853 * 274.72169 * 4 2 1 6 6 C 1.35365 * 107.22386 * 179.89569 * 5 4 2 7 7 C 1.41502 * 105.50396 * 0.34712 * 6 5 4 8 8 C 1.47710 * 126.51731 * 179.77303 * 7 6 5 9 9 O 1.21575 * 120.00195 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99768 * 179.97438 * 8 7 6 11 11 C 1.46511 * 119.99871 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.46921 * 180.02562 * 11 10 8 13 13 C 1.29459 * 117.69030 * 95.00292 * 12 11 10 14 14 C 1.50322 * 123.64686 * 180.85514 * 13 12 11 15 15 N 1.47013 * 109.16645 * 349.02438 * 14 13 12 16 16 C 1.36937 * 121.36908 * 222.97200 * 15 14 13 17 17 H 1.08001 * 119.99735 * 155.97886 * 16 15 14 18 18 C 1.38810 * 120.00010 * 335.96890 * 16 15 14 19 19 N 1.31619 * 120.00447 * 344.50152 * 18 16 15 20 20 Si 1.86809 * 119.99685 * 164.50195 * 18 16 15 21 21 H 1.48502 * 109.47191 * 94.45629 * 20 18 16 22 22 H 1.48499 * 109.46764 * 214.45633 * 20 18 16 23 23 H 1.48498 * 109.47062 * 334.45291 * 20 18 16 24 24 C 1.47334 * 117.25190 * 42.94546 * 15 14 13 25 25 C 1.49962 * 117.69533 * 274.73898 * 12 11 10 26 26 N 1.28462 * 124.88667 * 95.02036 * 4 2 1 27 27 H 1.08994 * 109.47408 * 59.99785 * 1 2 3 28 28 H 1.09005 * 109.47008 * 299.99539 * 1 2 3 29 29 H 1.09002 * 109.47077 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46901 * 239.99750 * 2 1 3 31 31 H 1.08996 * 109.47318 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47009 * 300.00296 * 3 2 1 33 33 H 1.08999 * 109.47434 * 60.00077 * 3 2 1 34 34 H 1.07995 * 126.38708 * 0.02562 * 5 4 2 35 35 H 1.08006 * 127.24553 * 180.08765 * 6 5 4 36 36 H 0.96995 * 120.00271 * 0.02562 * 10 8 7 37 37 H 1.09003 * 109.47010 * 300.00356 * 11 10 8 38 38 H 1.08995 * 109.47046 * 60.00018 * 11 10 8 39 39 H 1.07993 * 118.17444 * 0.87456 * 13 12 11 40 40 H 1.09003 * 109.51741 * 108.92625 * 14 13 12 41 41 H 1.08998 * 109.52210 * 229.11457 * 14 13 12 42 42 H 0.97003 * 120.00090 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.77957 * 57.80863 * 24 15 14 44 44 H 1.08997 * 109.78044 * 178.62017 * 24 15 14 45 45 H 1.09000 * 109.31376 * 281.29571 * 25 12 11 46 46 H 1.08999 * 109.31749 * 40.71402 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1898 -0.1138 2.4050 6 6 2.6495 -1.0711 3.2444 7 6 2.7480 -2.2455 2.4611 8 6 3.2090 -3.5718 2.9196 9 8 3.5512 -3.7303 4.0754 10 7 3.2501 -4.6062 2.0567 11 6 3.7069 -5.9219 2.5116 12 6 3.6584 -6.8954 1.3623 13 6 4.7458 -7.0806 0.6845 14 6 4.8436 -8.0048 -0.4970 15 7 3.6251 -8.8240 -0.5711 16 6 3.6831 -10.1648 -0.8434 17 1 2.8820 -10.8155 -0.5253 18 6 4.7714 -10.6874 -1.5285 19 7 5.5873 -9.8848 -2.1785 20 14 5.0780 -12.5302 -1.5279 21 1 4.4626 -13.1348 -2.7367 22 1 6.5403 -12.7886 -1.5350 23 1 4.4749 -13.1319 -0.3117 24 6 2.3392 -8.1431 -0.3398 25 6 2.3558 -7.5859 1.0881 26 7 2.3503 -1.9307 1.2445 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.9945 0.9183 2.6559 35 1 2.8940 -0.9607 4.2906 36 1 2.9774 -4.4797 1.1345 37 1 4.7302 -5.8443 2.8788 38 1 3.0587 -6.2740 3.3141 39 1 5.6319 -6.5413 0.9848 40 1 4.9445 -7.4186 -1.4105 41 1 5.7121 -8.6532 -0.3813 42 1 6.3480 -10.2500 -2.6569 43 1 2.2184 -7.3299 -1.0556 44 1 1.5205 -8.8546 -0.4471 45 1 2.2236 -8.4017 1.7989 46 1 1.5387 -6.8740 1.2050 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001219997.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:50:45 Heat of formation + Delta-G solvation = 78.726235 kcal Electronic energy + Delta-G solvation = -26050.134892 eV Core-core repulsion = 22363.495838 eV Total energy + Delta-G solvation = -3686.639054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.86575 -39.34265 -37.66951 -36.18700 -34.86365 -32.85955 -31.11017 -31.07851 -30.34755 -29.64069 -27.91346 -26.99352 -24.75512 -23.64105 -22.76147 -22.41175 -21.01818 -20.61302 -19.91797 -18.13160 -17.59374 -16.99945 -16.23211 -15.80844 -15.60124 -15.20958 -14.93315 -14.71345 -14.27698 -14.01150 -13.79511 -13.63174 -13.47934 -13.36016 -13.17753 -12.88690 -12.82958 -12.71536 -12.21525 -12.01422 -11.93214 -11.72123 -11.52923 -11.31827 -11.04865 -10.89727 -10.71047 -10.38338 -10.29953 -10.07155 -9.80718 -9.56345 -9.43451 -9.24256 -8.83148 -8.66064 -8.02099 -6.72638 -5.78373 -3.16892 1.52070 2.00134 2.15231 2.66676 3.38946 3.46101 3.48813 3.49248 3.62383 3.92983 4.26059 4.46346 4.50835 4.51247 4.55443 4.88423 4.96967 5.07117 5.16012 5.23351 5.26271 5.39288 5.40253 5.44164 5.54495 5.56951 5.60478 5.64267 5.88529 5.99587 6.11823 6.21881 6.24723 6.37967 6.51512 6.56804 6.61289 6.76657 6.90691 7.20562 7.29150 7.36332 7.58708 7.75110 7.84893 7.86969 8.33688 8.39535 9.20976 9.83896 10.42148 11.32126 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.020491 B = 0.002464 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.138646 B =11360.208502 C =12063.657648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 C -0.164 4.164 4 N -0.277 5.277 5 C -0.021 4.021 6 C -0.180 4.180 7 C -0.016 4.016 8 C 0.600 3.400 9 O -0.541 6.541 10 N -0.707 5.707 11 C 0.157 3.843 12 C -0.165 4.165 13 C -0.124 4.124 14 C 0.194 3.806 15 N -0.596 5.596 16 C -0.245 4.245 17 H 0.068 0.932 18 C -0.002 4.002 19 N -0.910 5.910 20 Si 0.904 3.096 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.144 3.856 25 C -0.090 4.090 26 N -0.258 5.258 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.178 0.822 35 H 0.161 0.839 36 H 0.408 0.592 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.041 0.959 41 H 0.093 0.907 42 H 0.254 0.746 43 H 0.023 0.977 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.713 24.215 5.217 26.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.039 3.961 3 C -0.222 4.222 4 N -0.066 5.066 5 C -0.163 4.163 6 C -0.208 4.208 7 C -0.176 4.176 8 C 0.384 3.616 9 O -0.417 6.417 10 N -0.357 5.357 11 C 0.035 3.965 12 C -0.166 4.166 13 C -0.145 4.145 14 C 0.070 3.930 15 N -0.319 5.319 16 C -0.374 4.374 17 H 0.086 0.914 18 C -0.200 4.200 19 N -0.555 5.555 20 Si 0.734 3.266 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.018 3.982 25 C -0.129 4.129 26 N -0.094 5.094 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.196 0.804 35 H 0.178 0.822 36 H 0.243 0.757 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.041 0.959 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.524 23.604 4.782 25.548 hybrid contribution 0.274 -0.389 0.330 0.579 sum -8.250 23.216 5.112 25.163 Atomic orbital electron populations 1.22230 0.92772 1.03867 1.03461 1.21614 0.95595 0.93341 0.85512 1.22196 1.02593 0.93468 1.03981 1.45761 1.45294 1.05949 1.09590 1.22732 1.07184 1.00762 0.85660 1.21766 1.06714 0.91067 1.01273 1.22005 1.08406 0.96284 0.90893 1.16940 0.77649 0.81934 0.85073 1.90778 1.49413 1.83686 1.17822 1.46059 1.66110 1.09512 1.14067 1.20507 0.99709 0.80406 0.95920 1.20484 0.97140 1.00474 0.98501 1.23281 0.96209 0.97652 0.97366 1.19755 0.91389 0.91190 0.90711 1.44136 0.99621 1.05673 1.82444 1.19186 1.06245 0.82667 1.29304 0.91376 1.24987 0.99758 0.97833 0.97401 1.70012 1.17484 1.33542 1.34490 0.86246 0.77260 0.85308 0.77776 1.21532 1.21576 1.20475 1.20987 0.89762 0.95274 0.92209 1.20784 0.93434 0.98379 1.00308 1.73538 1.15876 0.97830 1.22121 0.89952 0.91647 0.91196 0.87081 0.91194 0.89565 0.91247 0.80447 0.82173 0.75730 0.91470 0.91402 0.88751 0.94136 0.88889 0.93645 0.95862 0.92500 0.91690 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 9.52 37.16 0.35 -0.46 16 2 C 0.14 0.84 3.80 -67.93 -0.26 0.58 16 3 C -0.16 -0.57 8.80 37.15 0.33 -0.24 16 4 N -0.28 -2.63 3.22 -54.83 -0.18 -2.81 16 5 C -0.02 -0.18 10.54 -17.17 -0.18 -0.36 16 6 C -0.18 -2.07 10.81 -39.36 -0.43 -2.49 16 7 C -0.02 -0.22 7.13 -82.77 -0.59 -0.81 16 8 C 0.60 9.65 7.82 -12.39 -0.10 9.55 16 9 O -0.54 -10.12 16.93 5.30 0.09 -10.03 16 10 N -0.71 -10.81 5.55 -62.47 -0.35 -11.15 16 11 C 0.16 2.53 5.66 -5.19 -0.03 2.50 16 12 C -0.17 -2.96 5.22 -101.00 -0.53 -3.49 16 13 C -0.12 -2.44 9.47 -35.78 -0.34 -2.78 16 14 C 0.19 4.66 5.23 -5.10 -0.03 4.64 16 15 N -0.60 -15.03 3.01 -173.56 -0.52 -15.55 16 16 C -0.24 -6.74 9.71 -15.06 -0.15 -6.89 16 17 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 18 C 0.00 -0.06 5.01 -17.43 -0.09 -0.14 16 19 N -0.91 -26.32 11.08 55.49 0.61 -25.70 16 20 Si 0.90 21.84 29.58 -169.99 -5.03 16.81 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.14 3.03 6.59 -3.44 -0.02 3.00 16 25 C -0.09 -1.62 5.95 -28.09 -0.17 -1.79 16 26 N -0.26 -3.29 11.67 33.42 0.39 -2.90 16 27 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.07 0.18 7.05 -51.93 -0.37 -0.19 16 34 H 0.18 0.84 7.16 -52.49 -0.38 0.46 16 35 H 0.16 1.67 8.06 -52.48 -0.42 1.24 16 36 H 0.41 5.96 8.19 -40.82 -0.33 5.63 16 37 H 0.07 1.10 7.78 -51.93 -0.40 0.70 16 38 H 0.07 1.10 8.11 -51.93 -0.42 0.68 16 39 H 0.09 1.68 7.73 -52.49 -0.41 1.27 16 40 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.09 2.48 6.41 -51.93 -0.33 2.14 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -33.14 379.65 -8.73 -41.86 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -7.25 Total: 2.94 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -2.22 Total: 0.82 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.04 Total: -58.12 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.14 -8.73 -41.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001219997.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.591 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds