Wall clock time and date at job start Fri Apr 10 2020 23:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47128 * 2 1 4 4 N 1.46505 * 109.47271 * 120.00236 * 2 1 3 5 5 C 1.35038 * 124.87853 * 274.72169 * 4 2 1 6 6 C 1.35365 * 107.22386 * 179.89569 * 5 4 2 7 7 C 1.41502 * 105.50396 * 0.34712 * 6 5 4 8 8 C 1.47710 * 126.51731 * 179.77303 * 7 6 5 9 9 O 1.21575 * 120.00195 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99768 * 179.97438 * 8 7 6 11 11 C 1.46511 * 119.99871 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.46921 * 180.02562 * 11 10 8 13 13 C 1.29459 * 117.69030 * 95.00292 * 12 11 10 14 14 C 1.50322 * 123.64686 * 180.85514 * 13 12 11 15 15 N 1.47013 * 109.16645 * 349.02438 * 14 13 12 16 16 C 1.36937 * 121.36908 * 222.97200 * 15 14 13 17 17 H 1.08001 * 119.99735 * 155.97886 * 16 15 14 18 18 C 1.38810 * 120.00010 * 335.96890 * 16 15 14 19 19 N 1.31619 * 120.00447 * 344.50152 * 18 16 15 20 20 Si 1.86809 * 119.99685 * 164.50195 * 18 16 15 21 21 H 1.48502 * 109.47191 * 94.45629 * 20 18 16 22 22 H 1.48499 * 109.46764 * 214.45633 * 20 18 16 23 23 H 1.48498 * 109.47062 * 334.45291 * 20 18 16 24 24 C 1.47334 * 117.25190 * 42.94546 * 15 14 13 25 25 C 1.49962 * 117.69533 * 274.73898 * 12 11 10 26 26 N 1.28462 * 124.88667 * 95.02036 * 4 2 1 27 27 H 1.08994 * 109.47408 * 59.99785 * 1 2 3 28 28 H 1.09005 * 109.47008 * 299.99539 * 1 2 3 29 29 H 1.09002 * 109.47077 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46901 * 239.99750 * 2 1 3 31 31 H 1.08996 * 109.47318 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47009 * 300.00296 * 3 2 1 33 33 H 1.08999 * 109.47434 * 60.00077 * 3 2 1 34 34 H 1.07995 * 126.38708 * 0.02562 * 5 4 2 35 35 H 1.08006 * 127.24553 * 180.08765 * 6 5 4 36 36 H 0.96995 * 120.00271 * 0.02562 * 10 8 7 37 37 H 1.09003 * 109.47010 * 300.00356 * 11 10 8 38 38 H 1.08995 * 109.47046 * 60.00018 * 11 10 8 39 39 H 1.07993 * 118.17444 * 0.87456 * 13 12 11 40 40 H 1.09003 * 109.51741 * 108.92625 * 14 13 12 41 41 H 1.08998 * 109.52210 * 229.11457 * 14 13 12 42 42 H 0.97003 * 120.00090 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.77957 * 57.80863 * 24 15 14 44 44 H 1.08997 * 109.78044 * 178.62017 * 24 15 14 45 45 H 1.09000 * 109.31376 * 281.29571 * 25 12 11 46 46 H 1.08999 * 109.31749 * 40.71402 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1898 -0.1138 2.4050 6 6 2.6495 -1.0711 3.2444 7 6 2.7480 -2.2455 2.4611 8 6 3.2090 -3.5718 2.9196 9 8 3.5512 -3.7303 4.0754 10 7 3.2501 -4.6062 2.0567 11 6 3.7069 -5.9219 2.5116 12 6 3.6584 -6.8954 1.3623 13 6 4.7458 -7.0806 0.6845 14 6 4.8436 -8.0048 -0.4970 15 7 3.6251 -8.8240 -0.5711 16 6 3.6831 -10.1648 -0.8434 17 1 2.8820 -10.8155 -0.5253 18 6 4.7714 -10.6874 -1.5285 19 7 5.5873 -9.8848 -2.1785 20 14 5.0780 -12.5302 -1.5279 21 1 4.4626 -13.1348 -2.7367 22 1 6.5403 -12.7886 -1.5350 23 1 4.4749 -13.1319 -0.3117 24 6 2.3392 -8.1431 -0.3398 25 6 2.3558 -7.5859 1.0881 26 7 2.3503 -1.9307 1.2445 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.9945 0.9183 2.6559 35 1 2.8940 -0.9607 4.2906 36 1 2.9774 -4.4797 1.1345 37 1 4.7302 -5.8443 2.8788 38 1 3.0587 -6.2740 3.3141 39 1 5.6319 -6.5413 0.9848 40 1 4.9445 -7.4186 -1.4105 41 1 5.7121 -8.6532 -0.3813 42 1 6.3480 -10.2500 -2.6569 43 1 2.2184 -7.3299 -1.0556 44 1 1.5205 -8.8546 -0.4471 45 1 2.2236 -8.4017 1.7989 46 1 1.5387 -6.8740 1.2050 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001219997.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:50:44 Heat of formation + Delta-G solvation = 57.580347 kcal Electronic energy + Delta-G solvation = -26051.051847 eV Core-core repulsion = 22363.495838 eV Total energy + Delta-G solvation = -3687.556009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.67082 -40.63330 -39.30168 -36.73527 -36.42942 -34.56269 -32.72999 -31.88401 -31.53188 -31.19129 -28.63466 -28.19698 -26.28982 -24.81538 -24.31743 -23.41224 -22.70431 -21.49168 -20.83035 -19.52990 -18.96844 -17.89355 -17.35215 -17.13683 -16.98623 -16.89802 -16.09022 -15.83256 -15.50872 -15.28207 -15.23328 -14.99248 -14.68611 -14.48369 -14.04696 -13.95116 -13.84662 -13.61061 -13.28261 -13.24941 -13.05285 -12.94323 -12.80589 -12.59089 -12.34885 -12.24464 -12.14909 -12.10650 -11.89039 -11.72072 -11.42497 -11.23463 -10.69135 -10.34950 -10.13809 -9.95416 -9.68297 -8.76144 -7.88785 -5.30214 0.53028 1.13739 1.21319 1.46511 1.48410 1.53107 1.58259 2.36402 2.40276 2.51025 3.28400 3.32751 3.60153 3.73800 3.85215 3.88756 3.94296 3.95446 4.07239 4.24608 4.41917 4.51550 4.61391 4.65440 4.66900 4.71077 4.77535 4.78481 4.82190 4.84173 4.89162 4.89807 5.08021 5.18301 5.19346 5.23611 5.29001 5.36982 5.40681 5.45995 5.60797 5.74471 5.92349 6.14232 6.33205 6.42508 6.91975 7.12611 7.13754 7.82289 8.36827 9.20049 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.020491 B = 0.002464 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.138646 B =11360.208502 C =12063.657648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.130 3.870 3 C -0.159 4.159 4 N -0.270 5.270 5 C 0.001 3.999 6 C -0.201 4.201 7 C -0.047 4.047 8 C 0.600 3.400 9 O -0.574 6.574 10 N -0.702 5.702 11 C 0.166 3.834 12 C -0.140 4.140 13 C -0.141 4.141 14 C 0.206 3.794 15 N -0.615 5.615 16 C -0.257 4.257 17 H 0.071 0.929 18 C -0.055 4.055 19 N -0.940 5.940 20 Si 0.969 3.031 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.271 1.271 24 C 0.140 3.860 25 C -0.084 4.084 26 N -0.278 5.278 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.223 0.777 35 H 0.165 0.835 36 H 0.411 0.589 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.013 0.987 41 H 0.059 0.941 42 H 0.250 0.750 43 H 0.026 0.974 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.354 26.404 5.864 28.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.031 3.969 3 C -0.217 4.217 4 N -0.060 5.060 5 C -0.142 4.142 6 C -0.229 4.229 7 C -0.206 4.206 8 C 0.386 3.614 9 O -0.452 6.452 10 N -0.352 5.352 11 C 0.043 3.957 12 C -0.141 4.141 13 C -0.162 4.162 14 C 0.081 3.919 15 N -0.339 5.339 16 C -0.387 4.387 17 H 0.089 0.911 18 C -0.250 4.250 19 N -0.587 5.587 20 Si 0.797 3.203 21 H -0.212 1.212 22 H -0.219 1.219 23 H -0.196 1.196 24 C 0.014 3.986 25 C -0.122 4.122 26 N -0.115 5.115 27 H 0.124 0.876 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.123 0.877 31 H 0.079 0.921 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.239 0.761 35 H 0.182 0.818 36 H 0.247 0.753 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.130 0.870 40 H 0.031 0.969 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.044 0.956 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.199 25.805 5.420 28.271 hybrid contribution 0.666 -0.945 0.072 1.159 sum -9.532 24.859 5.492 27.185 Atomic orbital electron populations 1.22215 0.91701 1.02862 1.05036 1.22007 0.96408 0.94507 0.84014 1.22212 1.02006 0.91599 1.05838 1.46227 1.43677 1.05118 1.10931 1.23311 1.04506 1.01927 0.84414 1.21991 1.07943 0.91021 1.01981 1.21822 1.10621 0.95974 0.92141 1.17235 0.76889 0.82715 0.84571 1.90746 1.51001 1.84383 1.19087 1.45936 1.65976 1.09099 1.14219 1.20336 0.99996 0.80395 0.94941 1.20598 0.96396 0.99360 0.97703 1.22975 0.97907 0.98242 0.97061 1.19394 0.90103 0.90796 0.91581 1.44412 1.01354 1.05497 1.82622 1.19524 1.06309 0.84067 1.28797 0.91129 1.25758 0.99799 1.01900 0.97508 1.70173 1.17866 1.35165 1.35456 0.85233 0.76684 0.80448 0.77929 1.21176 1.21926 1.19562 1.21160 0.88104 0.95247 0.94047 1.20720 0.94404 0.99027 0.98098 1.73472 1.16617 0.99716 1.21743 0.87604 0.90855 0.93447 0.87724 0.92079 0.87482 0.89661 0.76099 0.81791 0.75273 0.91543 0.90806 0.87016 0.96886 0.92294 0.94103 0.95641 0.92065 0.91468 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.52 71.98 0.69 -0.47 16 2 C 0.13 1.24 3.80 44.99 0.17 1.41 16 3 C -0.16 -0.54 8.80 71.98 0.63 0.09 16 4 N -0.27 -4.59 3.22 -327.38 -1.05 -5.65 16 5 C 0.00 0.02 10.54 83.54 0.88 0.90 16 6 C -0.20 -4.37 10.81 22.41 0.24 -4.12 16 7 C -0.05 -1.30 7.13 42.46 0.30 -1.00 16 8 C 0.60 19.19 7.82 86.75 0.68 19.87 16 9 O -0.57 -21.50 16.93 -3.95 -0.07 -21.57 16 10 N -0.70 -20.97 5.55 -469.81 -2.61 -23.58 16 11 C 0.17 5.17 5.66 85.63 0.48 5.66 16 12 C -0.14 -4.88 5.22 -15.14 -0.08 -4.96 16 13 C -0.14 -5.58 9.47 27.10 0.26 -5.33 16 14 C 0.21 10.26 5.23 85.42 0.45 10.71 16 15 N -0.61 -31.53 3.01 -703.02 -2.11 -33.64 16 16 C -0.26 -14.35 9.71 84.03 0.82 -13.53 16 17 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 18 C -0.05 -3.11 5.01 84.86 0.43 -2.69 16 19 N -0.94 -56.12 11.08 21.65 0.24 -55.88 16 20 Si 0.97 45.53 29.58 68.60 2.03 47.56 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 24 C 0.14 5.79 6.59 86.32 0.57 6.36 16 25 C -0.08 -2.89 5.95 29.71 0.18 -2.71 16 26 N -0.28 -6.87 11.67 -48.18 -0.56 -7.44 16 27 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.08 0.05 7.05 -2.39 -0.02 0.03 16 34 H 0.22 1.05 7.16 -2.91 -0.02 1.03 16 35 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 36 H 0.41 11.74 8.19 -92.71 -0.76 10.99 16 37 H 0.07 2.12 7.78 -2.39 -0.02 2.10 16 38 H 0.07 2.26 8.11 -2.39 -0.02 2.24 16 39 H 0.11 3.99 7.73 -2.91 -0.02 3.97 16 40 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 3.30 6.41 -2.39 -0.02 3.28 16 42 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 43 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.06 2.45 7.96 -2.39 -0.02 2.43 16 45 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -73.97 379.65 2.77 -71.19 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.22 Total: 18.81 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 6.69 Total: 10.19 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -6.09 Total: -126.18 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.07 Total: -21.57 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -73.97 2.77 -71.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001219997.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.771 kcal (2) G-P(sol) polarization free energy of solvation -73.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds