Wall clock time and date at job start Fri Apr 10 2020 23:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47074 * 2 1 4 4 C 1.52995 * 109.47323 * 240.00290 * 2 1 3 5 5 C 1.50701 * 109.47362 * 119.99887 * 2 1 3 6 6 N 1.31873 * 118.94858 * 60.00204 * 5 2 1 7 7 C 1.32146 * 120.96645 * 179.97438 * 6 5 2 8 8 C 1.39949 * 118.92433 * 0.02562 * 7 6 5 9 9 C 1.47836 * 120.93948 * 180.02562 * 8 7 6 10 10 O 1.21550 * 119.99917 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99909 * 179.97438 * 9 8 7 12 12 C 1.46495 * 119.99700 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.91808 * 328.89835 * 12 11 9 14 14 C 1.55164 * 111.00461 * 205.00194 * 12 11 9 15 15 C 1.54323 * 102.93863 * 277.43101 * 14 12 11 16 16 N 1.47019 * 107.27318 * 337.79949 * 15 14 12 17 17 C 1.36938 * 125.65122 * 178.98546 * 16 15 14 18 18 H 1.08002 * 120.00486 * 174.79283 * 17 16 15 19 19 C 1.38812 * 119.99767 * 354.79553 * 17 16 15 20 20 N 1.31616 * 120.00249 * 7.04853 * 19 17 16 21 21 Si 1.86806 * 119.99937 * 187.05227 * 19 17 16 22 22 H 1.48491 * 109.47268 * 94.98888 * 21 19 17 23 23 H 1.48503 * 109.46989 * 214.98713 * 21 19 17 24 24 H 1.48497 * 109.46914 * 334.98623 * 21 19 17 25 25 C 1.47427 * 108.70318 * 358.95111 * 16 15 14 26 26 C 1.39945 * 118.12304 * 0.26633 * 8 7 6 27 27 N 1.31869 * 118.95780 * 240.02162 * 5 2 1 28 28 H 1.09008 * 109.46928 * 300.00013 * 1 2 3 29 29 H 1.08992 * 109.47035 * 59.99560 * 1 2 3 30 30 H 1.08995 * 109.46989 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46943 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47549 * 300.00125 * 3 2 1 33 33 H 1.09003 * 109.46574 * 60.00225 * 3 2 1 34 34 H 1.09001 * 109.46958 * 299.99843 * 4 2 1 35 35 H 1.09000 * 109.47001 * 59.99435 * 4 2 1 36 36 H 1.08995 * 109.47681 * 179.97438 * 4 2 1 37 37 H 1.08002 * 120.54056 * 179.97438 * 7 6 5 38 38 H 0.96999 * 120.00167 * 0.02562 * 11 9 8 39 39 H 1.08999 * 110.71826 * 35.78667 * 14 12 11 40 40 H 1.08991 * 110.72168 * 159.06649 * 14 12 11 41 41 H 1.08998 * 109.88789 * 97.22253 * 15 14 12 42 42 H 1.09009 * 109.87872 * 218.38762 * 15 14 12 43 43 H 0.96999 * 120.00130 * 179.97438 * 20 19 17 44 44 H 1.09006 * 110.36168 * 265.28332 * 25 16 15 45 45 H 1.08991 * 110.36898 * 142.96842 * 25 16 15 46 46 H 1.07996 * 120.54043 * 179.70636 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 7 1.7012 -1.9729 1.4185 7 6 2.1200 -2.6344 2.4831 8 6 2.9257 -1.9733 3.4172 9 6 3.4194 -2.6705 4.6236 10 8 3.1262 -3.8344 4.8157 11 7 4.1946 -2.0157 5.5106 12 6 4.6834 -2.7065 6.7064 13 1 3.9728 -3.4646 7.0356 14 6 4.9883 -1.6981 7.8456 15 6 6.4019 -1.1917 7.4897 16 7 7.0260 -2.2078 6.6298 17 6 8.2780 -2.1290 6.0806 18 1 8.6800 -2.9667 5.5301 19 6 9.0304 -0.9723 6.2316 20 7 8.6020 -0.0062 7.0160 21 14 10.6512 -0.7870 5.3213 22 1 10.4246 -0.0504 4.0521 23 1 11.6104 -0.0322 6.1672 24 1 11.2068 -2.1310 5.0214 25 6 6.0810 -3.3262 6.4573 26 6 3.2465 -0.6320 3.1794 27 7 2.7888 -0.0497 2.0850 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6767 -1.7488 -1.2492 35 1 1.6766 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.8443 -3.6681 2.6305 38 1 4.4283 -1.0868 5.3575 39 1 4.2710 -0.8774 7.8364 40 1 4.9905 -2.1990 8.8136 41 1 6.3326 -0.2448 6.9542 42 1 6.9896 -1.0637 8.3988 43 1 9.1280 0.8019 7.1217 44 1 6.2839 -4.1102 7.1870 45 1 6.1447 -3.7239 5.4445 46 1 3.8616 -0.0829 3.8769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016411149.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:50:49 Heat of formation + Delta-G solvation = 11.467805 kcal Electronic energy + Delta-G solvation = -26767.741785 eV Core-core repulsion = 23078.186186 eV Total energy + Delta-G solvation = -3689.555599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.52223 -40.83614 -38.91038 -37.65038 -35.62126 -34.94446 -33.83750 -32.54864 -30.94429 -29.01985 -28.27797 -28.19181 -26.73939 -26.06178 -25.41844 -22.78298 -21.92671 -21.47907 -20.90909 -19.34443 -18.87712 -18.50265 -17.49534 -17.21762 -16.65109 -16.54382 -15.86542 -15.84267 -15.57672 -15.46525 -15.01342 -14.85900 -14.63369 -14.56692 -14.02817 -13.85367 -13.58883 -13.21156 -13.12177 -12.89174 -12.84904 -12.83536 -12.56760 -12.31371 -12.17827 -12.07204 -12.05044 -12.02238 -11.95027 -11.86284 -11.84621 -11.61028 -11.07268 -10.72410 -10.69055 -10.40994 -10.13885 -8.86186 -7.86951 -5.19461 -0.72380 -0.11519 1.45117 1.45987 1.54491 1.67158 1.99736 2.48231 2.62809 2.64637 2.92473 3.31319 3.32375 3.55799 3.67411 3.71579 3.82877 3.88320 3.98571 3.99142 4.06625 4.31414 4.34877 4.57178 4.68469 4.72320 4.77447 4.78983 4.88311 4.89367 4.95051 4.96834 4.99727 5.01035 5.04658 5.13309 5.31210 5.35850 5.44958 5.48455 5.48985 5.67436 5.73830 5.77403 6.19899 6.40558 6.85666 7.03091 7.11687 7.77103 8.41047 9.23176 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.013611 B = 0.003376 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.658370 B = 8293.023667 C = 9503.560579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.007 4.007 3 C -0.125 4.125 4 C -0.133 4.133 5 C 0.337 3.663 6 N -0.521 5.521 7 C 0.208 3.792 8 C -0.251 4.251 9 C 0.574 3.426 10 O -0.566 6.566 11 N -0.693 5.693 12 C 0.141 3.859 13 H 0.110 0.890 14 C -0.134 4.134 15 C 0.181 3.819 16 N -0.621 5.621 17 C -0.242 4.242 18 H 0.072 0.928 19 C -0.055 4.055 20 N -0.942 5.942 21 Si 0.969 3.031 22 H -0.288 1.288 23 H -0.293 1.293 24 H -0.274 1.274 25 C 0.121 3.879 26 C 0.189 3.811 27 N -0.525 5.525 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.043 0.957 37 H 0.191 0.809 38 H 0.407 0.593 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.024 0.976 42 H 0.007 0.993 43 H 0.248 0.752 44 H 0.035 0.965 45 H 0.029 0.971 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.907 1.588 -11.503 21.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.009 4.009 3 C -0.183 4.183 4 C -0.191 4.191 5 C 0.071 3.929 6 N -0.234 5.234 7 C 0.041 3.959 8 C -0.258 4.258 9 C 0.360 3.640 10 O -0.446 6.446 11 N -0.342 5.342 12 C 0.036 3.964 13 H 0.128 0.872 14 C -0.172 4.172 15 C 0.056 3.944 16 N -0.348 5.348 17 C -0.371 4.371 18 H 0.090 0.910 19 C -0.249 4.249 20 N -0.591 5.591 21 Si 0.798 3.202 22 H -0.215 1.215 23 H -0.220 1.220 24 H -0.199 1.199 25 C -0.005 4.005 26 C 0.022 3.978 27 N -0.238 5.238 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.062 0.938 37 H 0.208 0.792 38 H 0.243 0.757 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.042 0.958 42 H 0.026 0.974 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.047 0.953 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -18.257 1.375 -12.158 21.978 hybrid contribution 1.992 0.041 0.742 2.126 sum -16.264 1.416 -11.416 19.921 Atomic orbital electron populations 1.21820 0.91004 1.02908 1.03080 1.19674 0.97373 0.95362 0.88447 1.21707 1.01072 0.92870 1.02661 1.21838 1.00431 1.00906 0.95894 1.24032 0.87149 0.87143 0.94607 1.68379 1.24199 1.09572 1.21262 1.23699 0.86176 1.00531 0.85514 1.21673 1.06565 0.97812 0.99788 1.17886 0.78027 0.85790 0.82293 1.90747 1.60004 1.17085 1.76770 1.45711 1.49756 1.15947 1.22827 1.22042 0.94371 0.95420 0.84572 0.87178 1.23096 0.97196 0.99166 0.97752 1.21001 0.89660 0.91116 0.92628 1.44709 1.13592 1.18946 1.57519 1.19317 0.91737 0.99031 1.27006 0.91007 1.25476 1.02035 0.96497 1.00858 1.70138 1.39916 1.08044 1.40963 0.85207 0.79575 0.77571 0.77869 1.21478 1.22004 1.19946 1.22085 0.89454 0.90862 0.98126 1.23808 0.90841 0.90502 0.92639 1.68406 1.12160 1.39419 1.03779 0.93236 0.89059 0.91943 0.93178 0.89887 0.92612 0.91933 0.88979 0.93767 0.79192 0.75689 0.88652 0.88878 0.95808 0.97433 0.94300 0.94773 0.95258 0.79716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.37 71.98 0.60 -1.26 16 2 C -0.01 -0.12 0.92 -52.93 -0.05 -0.16 16 3 C -0.13 -2.05 7.66 71.98 0.55 -1.50 16 4 C -0.13 -2.07 8.37 71.98 0.60 -1.47 16 5 C 0.34 7.99 6.25 138.70 0.87 8.86 16 6 N -0.52 -12.71 9.77 -186.79 -1.82 -14.54 16 7 C 0.21 5.16 10.88 85.06 0.93 6.09 16 8 C -0.25 -6.59 5.91 -19.91 -0.12 -6.71 16 9 C 0.57 17.33 7.79 86.78 0.68 18.00 16 10 O -0.57 -19.87 16.09 -3.87 -0.06 -19.93 16 11 N -0.69 -20.69 5.14 -438.84 -2.26 -22.95 16 12 C 0.14 4.55 3.43 46.39 0.16 4.71 16 13 H 0.11 3.29 7.54 -2.39 -0.02 3.28 16 14 C -0.13 -4.21 6.55 31.78 0.21 -4.00 16 15 C 0.18 8.11 5.37 86.73 0.47 8.58 16 16 N -0.62 -30.42 3.39 -691.99 -2.35 -32.77 16 17 C -0.24 -13.31 10.27 84.03 0.86 -12.45 16 18 H 0.07 3.91 7.84 -2.91 -0.02 3.89 16 19 C -0.05 -3.04 5.48 84.86 0.46 -2.57 16 20 N -0.94 -54.11 10.36 21.65 0.22 -53.89 16 21 Si 0.97 45.15 29.56 68.60 2.03 47.18 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 25 C 0.12 4.91 6.93 86.85 0.60 5.51 16 26 C 0.19 4.69 10.81 85.06 0.92 5.61 16 27 N -0.52 -13.32 8.98 -186.80 -1.68 -15.00 16 28 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.97 8.01 -2.39 -0.02 0.95 16 31 H 0.05 0.96 8.04 -2.38 -0.02 0.94 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 0.99 8.04 -2.39 -0.02 0.97 16 34 H 0.06 1.05 8.01 -2.39 -0.02 1.03 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.19 4.21 7.74 -2.91 -0.02 4.19 16 38 H 0.41 11.40 6.81 -92.71 -0.63 10.77 16 39 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.02 1.17 7.30 -2.39 -0.02 1.15 16 42 H 0.01 0.38 7.61 -2.38 -0.02 0.37 16 43 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 44 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 45 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.19 3.97 6.54 -2.91 -0.02 3.95 16 Total: -1.00 -67.45 374.62 2.17 -65.28 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.35 Total: 19.36 kcal Atomic # 6 Polarization: 19.50 SS G_CDS: 7.74 Total: 27.24 kcal Atomic # 7 Polarization: -131.25 SS G_CDS: -7.88 Total: -139.14 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.06 Total: -19.93 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -67.45 2.17 -65.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016411149.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.747 kcal (2) G-P(sol) polarization free energy of solvation -67.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds