Wall clock time and date at job start Fri Apr 10 2020 23:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47328 * 2 1 4 4 C 1.53001 * 109.46879 * 239.99937 * 2 1 3 5 5 C 1.50702 * 109.46996 * 120.00070 * 2 1 3 6 6 N 1.31874 * 118.95085 * 59.99560 * 5 2 1 7 7 C 1.32146 * 120.96607 * 180.02562 * 6 5 2 8 8 C 1.39951 * 118.92404 * 0.02562 * 7 6 5 9 9 C 1.47832 * 120.94250 * 180.02562 * 8 7 6 10 10 O 1.21554 * 119.99482 * 7.56094 * 9 8 7 11 11 N 1.34777 * 120.00324 * 187.56390 * 9 8 7 12 12 C 1.47020 * 125.64656 * 355.12646 * 11 9 8 13 13 C 1.54323 * 107.27165 * 178.97572 * 12 11 9 14 14 C 1.55152 * 102.93972 * 337.80128 * 13 12 11 15 15 H 1.08997 * 111.00852 * 277.39172 * 14 13 12 16 16 N 1.46503 * 111.00293 * 153.57753 * 14 13 12 17 17 C 1.36939 * 120.00159 * 158.18466 * 16 14 13 18 18 H 1.07993 * 119.99771 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99856 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00261 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99942 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47205 * 270.00355 * 21 19 17 23 23 H 1.48503 * 109.46709 * 30.00664 * 21 19 17 24 24 H 1.48496 * 109.47228 * 150.00180 * 21 19 17 25 25 C 1.47468 * 125.63014 * 175.12268 * 11 9 8 26 26 C 1.39954 * 118.12208 * 0.26948 * 8 7 6 27 27 N 1.31870 * 118.95152 * 240.02176 * 5 2 1 28 28 H 1.08990 * 109.47032 * 300.00309 * 1 2 3 29 29 H 1.08997 * 109.46747 * 60.00158 * 1 2 3 30 30 H 1.09003 * 109.46869 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47397 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46789 * 299.99966 * 3 2 1 33 33 H 1.08998 * 109.47628 * 59.99753 * 3 2 1 34 34 H 1.09008 * 109.47024 * 299.99591 * 4 2 1 35 35 H 1.08997 * 109.47510 * 60.00371 * 4 2 1 36 36 H 1.09009 * 109.46938 * 180.02562 * 4 2 1 37 37 H 1.07994 * 120.54152 * 180.02562 * 7 6 5 38 38 H 1.09007 * 109.88669 * 59.55399 * 12 11 9 39 39 H 1.09005 * 109.88389 * 298.39519 * 12 11 9 40 40 H 1.09004 * 110.71828 * 219.44345 * 13 12 11 41 41 H 1.09000 * 110.87436 * 96.24297 * 13 12 11 42 42 H 0.97002 * 119.99817 * 338.17935 * 16 14 13 43 43 H 0.96998 * 120.00194 * 359.97438 * 20 19 17 44 44 H 1.08998 * 110.34448 * 85.25326 * 25 11 9 45 45 H 1.08998 * 110.40358 * 322.91626 * 25 11 9 46 46 H 1.08000 * 120.54227 * 179.70578 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2305 6 7 1.7011 -1.9729 1.4186 7 6 2.1189 -2.6341 2.4837 8 6 2.9238 -1.9727 3.4183 9 6 3.4166 -2.6695 4.6254 10 8 3.2410 -3.8658 4.7507 11 7 4.0603 -1.9785 5.5869 12 6 4.4282 -0.5566 5.5197 13 6 5.1214 -0.1993 6.8514 14 6 4.6005 -1.2945 7.8190 15 1 3.6187 -1.0327 8.2134 16 7 5.5537 -1.5314 8.9060 17 6 5.1286 -2.0971 10.0784 18 1 4.0906 -2.3682 10.2019 19 6 6.0320 -2.3219 11.1081 20 7 7.2970 -1.9910 10.9578 21 14 5.4520 -3.0930 12.7077 22 1 5.0275 -2.0241 13.6470 23 1 4.3052 -3.9961 12.4345 24 1 6.5621 -3.8717 13.3129 25 6 4.5121 -2.5237 6.8804 26 6 3.2448 -0.6314 3.1804 27 7 2.7887 -0.0497 2.0850 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6767 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1393 36 1 3.1301 -0.7217 -1.2490 37 1 1.8438 -3.6680 2.6307 38 1 3.5331 0.0523 5.3925 39 1 5.1135 -0.3899 4.6886 40 1 4.8177 0.7911 7.1906 41 1 6.2054 -0.2559 6.7524 42 1 6.4860 -1.2876 8.7952 43 1 7.5981 -1.5903 10.1274 44 1 5.4912 -2.9908 6.7736 45 1 3.7878 -3.2424 7.2637 46 1 3.8593 -0.0821 3.8783 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019880192.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:50:56 Heat of formation + Delta-G solvation = 41.978994 kcal Electronic energy + Delta-G solvation = -26427.433910 eV Core-core repulsion = 22739.201375 eV Total energy + Delta-G solvation = -3688.232534 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.71140 -39.85920 -37.61188 -36.95786 -34.77200 -34.02900 -32.33936 -31.25664 -29.83619 -27.87896 -27.63832 -27.55565 -25.69347 -24.54834 -23.81879 -22.85574 -20.65595 -20.34053 -19.98670 -18.17202 -17.66263 -17.03496 -16.78064 -16.17273 -15.66882 -15.35903 -14.82984 -14.64301 -14.38318 -14.27114 -13.94604 -13.86443 -13.73462 -13.45838 -13.00960 -12.87288 -12.61596 -12.52680 -12.39373 -12.10287 -11.97596 -11.50065 -11.37223 -11.34398 -11.25664 -11.23697 -11.10604 -10.80193 -10.69212 -10.44357 -10.07750 -9.98564 -9.78458 -9.50534 -9.29974 -9.10328 -8.61800 -7.23392 -6.22941 -3.26101 0.18641 0.75891 2.69592 2.85635 3.41536 3.47458 3.51315 3.51712 3.65742 3.75240 4.20455 4.26648 4.49670 4.55401 4.58378 4.59601 4.63839 4.68134 4.89529 4.99475 5.08003 5.24974 5.28300 5.28435 5.44837 5.45792 5.46080 5.52615 5.58000 5.58050 5.62817 5.70305 5.75934 5.83943 5.92211 6.02386 6.03164 6.06996 6.13710 6.26195 6.39366 6.60455 6.67063 7.45993 7.69398 7.72344 8.03983 8.62696 9.05009 9.91718 10.03612 11.24774 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.031997 B = 0.002403 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.882882 B =11649.818980 C =12084.992421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.003 4.003 3 C -0.129 4.129 4 C -0.136 4.136 5 C 0.340 3.660 6 N -0.516 5.516 7 C 0.208 3.792 8 C -0.240 4.240 9 C 0.578 3.422 10 O -0.534 6.534 11 N -0.605 5.605 12 C 0.088 3.912 13 C -0.143 4.143 14 C 0.178 3.822 15 H 0.069 0.931 16 N -0.722 5.722 17 C -0.342 4.342 18 H 0.068 0.932 19 C -0.039 4.039 20 N -0.939 5.939 21 Si 1.083 2.917 22 H -0.294 1.294 23 H -0.293 1.293 24 H -0.287 1.287 25 C 0.083 3.917 26 C 0.147 3.853 27 N -0.514 5.514 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.181 0.819 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.371 0.629 43 H 0.256 0.744 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.757 7.337 -23.080 26.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.005 4.005 3 C -0.187 4.187 4 C -0.194 4.194 5 C 0.073 3.927 6 N -0.229 5.229 7 C 0.040 3.960 8 C -0.248 4.248 9 C 0.365 3.635 10 O -0.412 6.412 11 N -0.338 5.338 12 C -0.035 4.035 13 C -0.182 4.182 14 C 0.065 3.935 15 H 0.087 0.913 16 N -0.363 5.363 17 C -0.472 4.472 18 H 0.086 0.914 19 C -0.237 4.237 20 N -0.583 5.583 21 Si 0.913 3.087 22 H -0.222 1.222 23 H -0.220 1.220 24 H -0.213 1.213 25 C -0.041 4.041 26 C -0.018 4.018 27 N -0.227 5.227 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.198 0.802 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.205 0.795 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -10.928 6.548 -22.268 25.655 hybrid contribution 0.158 0.035 -0.764 0.781 sum -10.770 6.584 -23.032 26.264 Atomic orbital electron populations 1.21849 0.92295 1.03067 1.02210 1.19465 0.96443 0.95235 0.89323 1.21727 1.01849 0.93170 1.01919 1.21851 1.01064 1.01061 0.95448 1.23415 0.87968 0.87135 0.94149 1.68300 1.23741 1.09453 1.21393 1.23493 0.86720 1.00047 0.85700 1.21811 1.05581 0.97614 0.99764 1.17435 0.78271 0.86172 0.81642 1.90799 1.58009 1.13831 1.78524 1.48421 1.56119 1.11110 1.18169 1.22500 0.99081 0.82392 0.99484 1.22990 1.01031 1.00768 0.93371 1.21250 0.94718 0.90250 0.87275 0.91284 1.42312 1.06931 1.74441 1.12577 1.20082 0.96111 1.37965 0.93061 0.91400 1.25830 0.94314 1.00991 1.02576 1.70872 1.15039 1.44428 1.27972 0.83198 0.74675 0.75967 0.74859 1.22151 1.21979 1.21271 1.23505 0.99934 0.99970 0.80728 1.25176 0.92307 0.91275 0.93067 1.68424 1.11702 1.38992 1.03541 0.92659 0.91401 0.91341 0.91872 0.92229 0.91848 0.91344 0.91397 0.92690 0.80216 0.90599 0.90705 0.89702 0.90228 0.79532 0.93289 0.91212 0.90631 0.78333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.37 37.16 0.31 -0.70 16 2 C 0.00 -0.02 0.92 -155.66 -0.14 -0.17 16 3 C -0.13 -0.96 7.66 37.15 0.28 -0.68 16 4 C -0.14 -1.01 8.37 37.16 0.31 -0.70 16 5 C 0.34 3.79 6.25 -157.06 -0.98 2.81 16 6 N -0.52 -6.11 9.77 -10.39 -0.10 -6.21 16 7 C 0.21 2.54 10.88 -16.78 -0.18 2.36 16 8 C -0.24 -3.07 5.90 -104.69 -0.62 -3.69 16 9 C 0.58 8.97 7.82 -12.33 -0.10 8.88 16 10 O -0.53 -10.06 16.77 5.32 0.09 -9.97 16 11 N -0.61 -8.98 3.33 -171.87 -0.57 -9.55 16 12 C 0.09 0.99 4.88 -3.07 -0.01 0.98 16 13 C -0.14 -1.90 6.59 -24.90 -0.16 -2.07 16 14 C 0.18 3.22 3.70 -65.78 -0.24 2.97 16 15 H 0.07 1.29 8.11 -51.93 -0.42 0.87 16 16 N -0.72 -16.75 5.26 -51.35 -0.27 -17.02 16 17 C -0.34 -9.15 9.97 -15.06 -0.15 -9.30 16 18 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 19 C -0.04 -1.09 5.50 -17.43 -0.10 -1.19 16 20 N -0.94 -27.99 13.70 55.49 0.76 -27.23 16 21 Si 1.08 25.29 29.92 -169.99 -5.09 20.20 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.08 1.49 6.59 -2.50 -0.02 1.48 16 26 C 0.15 1.65 9.87 -16.77 -0.17 1.48 16 27 N -0.51 -5.86 8.98 -10.39 -0.09 -5.95 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.55 8.01 -51.93 -0.42 0.14 16 31 H 0.06 0.51 8.04 -51.93 -0.42 0.09 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.51 8.04 -51.93 -0.42 0.10 16 34 H 0.07 0.55 8.01 -51.92 -0.42 0.14 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 37 H 0.18 2.01 7.76 -52.49 -0.41 1.60 16 38 H 0.08 0.71 6.68 -51.93 -0.35 0.37 16 39 H 0.08 0.69 6.82 -51.93 -0.35 0.34 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.08 1.07 7.99 -51.93 -0.42 0.65 16 42 H 0.37 8.80 6.56 -40.82 -0.27 8.53 16 43 H 0.26 7.43 6.77 -40.82 -0.28 7.16 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.08 1.49 8.09 -51.93 -0.42 1.07 16 46 H 0.20 1.83 2.96 -52.85 -0.16 1.67 16 LS Contribution 370.96 15.07 5.59 5.59 Total: -1.00 -32.42 370.96 -8.55 -40.97 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.90 Total: 6.70 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -1.97 Total: 2.47 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -0.28 Total: -65.97 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.09 Total: 20.20 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.42 -8.55 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019880192.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.949 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds