Wall clock time and date at job start Fri Apr 10 2020 23:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47328 * 2 1 4 4 C 1.53001 * 109.46879 * 239.99937 * 2 1 3 5 5 C 1.50702 * 109.46996 * 120.00070 * 2 1 3 6 6 N 1.31874 * 118.95085 * 59.99560 * 5 2 1 7 7 C 1.32146 * 120.96607 * 180.02562 * 6 5 2 8 8 C 1.39951 * 118.92404 * 0.02562 * 7 6 5 9 9 C 1.47832 * 120.94250 * 180.02562 * 8 7 6 10 10 O 1.21554 * 119.99482 * 7.56094 * 9 8 7 11 11 N 1.34777 * 120.00324 * 187.56390 * 9 8 7 12 12 C 1.47020 * 125.64656 * 355.12646 * 11 9 8 13 13 C 1.54323 * 107.27165 * 178.97572 * 12 11 9 14 14 C 1.55152 * 102.93972 * 337.80128 * 13 12 11 15 15 H 1.08997 * 111.00852 * 277.39172 * 14 13 12 16 16 N 1.46503 * 111.00293 * 153.57753 * 14 13 12 17 17 C 1.36939 * 120.00159 * 158.18466 * 16 14 13 18 18 H 1.07993 * 119.99771 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99856 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00261 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99942 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47205 * 270.00355 * 21 19 17 23 23 H 1.48503 * 109.46709 * 30.00664 * 21 19 17 24 24 H 1.48496 * 109.47228 * 150.00180 * 21 19 17 25 25 C 1.47468 * 125.63014 * 175.12268 * 11 9 8 26 26 C 1.39954 * 118.12208 * 0.26948 * 8 7 6 27 27 N 1.31870 * 118.95152 * 240.02176 * 5 2 1 28 28 H 1.08990 * 109.47032 * 300.00309 * 1 2 3 29 29 H 1.08997 * 109.46747 * 60.00158 * 1 2 3 30 30 H 1.09003 * 109.46869 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47397 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46789 * 299.99966 * 3 2 1 33 33 H 1.08998 * 109.47628 * 59.99753 * 3 2 1 34 34 H 1.09008 * 109.47024 * 299.99591 * 4 2 1 35 35 H 1.08997 * 109.47510 * 60.00371 * 4 2 1 36 36 H 1.09009 * 109.46938 * 180.02562 * 4 2 1 37 37 H 1.07994 * 120.54152 * 180.02562 * 7 6 5 38 38 H 1.09007 * 109.88669 * 59.55399 * 12 11 9 39 39 H 1.09005 * 109.88389 * 298.39519 * 12 11 9 40 40 H 1.09004 * 110.71828 * 219.44345 * 13 12 11 41 41 H 1.09000 * 110.87436 * 96.24297 * 13 12 11 42 42 H 0.97002 * 119.99817 * 338.17935 * 16 14 13 43 43 H 0.96998 * 120.00194 * 359.97438 * 20 19 17 44 44 H 1.08998 * 110.34448 * 85.25326 * 25 11 9 45 45 H 1.08998 * 110.40358 * 322.91626 * 25 11 9 46 46 H 1.08000 * 120.54227 * 179.70578 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2305 6 7 1.7011 -1.9729 1.4186 7 6 2.1189 -2.6341 2.4837 8 6 2.9238 -1.9727 3.4183 9 6 3.4166 -2.6695 4.6254 10 8 3.2410 -3.8658 4.7507 11 7 4.0603 -1.9785 5.5869 12 6 4.4282 -0.5566 5.5197 13 6 5.1214 -0.1993 6.8514 14 6 4.6005 -1.2945 7.8190 15 1 3.6187 -1.0327 8.2134 16 7 5.5537 -1.5314 8.9060 17 6 5.1286 -2.0971 10.0784 18 1 4.0906 -2.3682 10.2019 19 6 6.0320 -2.3219 11.1081 20 7 7.2970 -1.9910 10.9578 21 14 5.4520 -3.0930 12.7077 22 1 5.0275 -2.0241 13.6470 23 1 4.3052 -3.9961 12.4345 24 1 6.5621 -3.8717 13.3129 25 6 4.5121 -2.5237 6.8804 26 6 3.2448 -0.6314 3.1804 27 7 2.7887 -0.0497 2.0850 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6767 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1393 36 1 3.1301 -0.7217 -1.2490 37 1 1.8438 -3.6680 2.6307 38 1 3.5331 0.0523 5.3925 39 1 5.1135 -0.3899 4.6886 40 1 4.8177 0.7911 7.1906 41 1 6.2054 -0.2559 6.7524 42 1 6.4860 -1.2876 8.7952 43 1 7.5981 -1.5903 10.1274 44 1 5.4912 -2.9908 6.7736 45 1 3.7878 -3.2424 7.2637 46 1 3.8593 -0.0821 3.8783 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019880192.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:50:55 Heat of formation + Delta-G solvation = 21.132158 kcal Electronic energy + Delta-G solvation = -26428.337896 eV Core-core repulsion = 22739.201375 eV Total energy + Delta-G solvation = -3689.136521 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.65094 -41.04386 -38.93117 -37.70033 -36.44853 -35.05082 -33.72457 -32.54470 -31.21439 -29.26059 -28.24678 -28.20324 -26.78955 -25.69385 -25.36365 -24.15133 -22.02056 -21.22993 -21.07130 -19.58109 -19.19186 -18.16858 -17.61500 -17.45813 -16.87465 -16.48200 -16.31095 -15.73306 -15.61111 -15.46021 -15.08357 -14.80066 -14.68573 -14.63601 -14.42055 -14.11310 -13.85858 -13.25111 -13.13198 -12.93410 -12.84577 -12.76711 -12.56690 -12.45571 -12.34504 -12.14138 -12.06386 -11.95509 -11.89713 -11.86605 -11.80138 -11.29140 -11.21808 -11.00221 -10.73739 -10.40429 -9.89852 -9.20884 -8.41810 -5.38523 -0.76909 -0.15081 1.54371 1.58498 1.64614 1.68442 1.82355 2.56603 2.61555 2.68872 2.89034 3.17341 3.29397 3.35862 3.45028 3.64414 3.78686 3.80613 3.94573 3.98568 4.00156 4.04131 4.18740 4.31957 4.36984 4.41485 4.54203 4.69548 4.77009 4.78379 4.83001 4.87480 4.91738 4.99184 5.02107 5.02764 5.08766 5.12604 5.22953 5.30382 5.35019 5.49584 5.58568 5.70062 6.26342 6.48416 6.79694 6.83580 7.04077 7.93494 8.02345 9.09886 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.031997 B = 0.002403 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.882882 B =11649.818980 C =12084.992421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.007 4.007 3 C -0.124 4.124 4 C -0.133 4.133 5 C 0.336 3.664 6 N -0.523 5.523 7 C 0.206 3.794 8 C -0.251 4.251 9 C 0.578 3.422 10 O -0.577 6.577 11 N -0.604 5.604 12 C 0.087 3.913 13 C -0.129 4.129 14 C 0.170 3.830 15 H 0.065 0.935 16 N -0.734 5.734 17 C -0.336 4.336 18 H 0.066 0.934 19 C -0.098 4.098 20 N -0.972 5.972 21 Si 1.126 2.874 22 H -0.281 1.281 23 H -0.277 1.277 24 H -0.294 1.294 25 C 0.095 3.905 26 C 0.159 3.841 27 N -0.517 5.517 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.183 0.817 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.366 0.634 43 H 0.248 0.752 44 H 0.051 0.949 45 H 0.048 0.952 46 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.882 9.383 -24.980 29.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.009 4.009 3 C -0.182 4.182 4 C -0.190 4.190 5 C 0.070 3.930 6 N -0.236 5.236 7 C 0.038 3.962 8 C -0.259 4.259 9 C 0.367 3.633 10 O -0.458 6.458 11 N -0.336 5.336 12 C -0.034 4.034 13 C -0.168 4.168 14 C 0.059 3.941 15 H 0.083 0.917 16 N -0.375 5.375 17 C -0.467 4.467 18 H 0.084 0.916 19 C -0.290 4.290 20 N -0.619 5.619 21 Si 0.951 3.049 22 H -0.208 1.208 23 H -0.203 1.203 24 H -0.221 1.221 25 C -0.031 4.031 26 C -0.006 4.006 27 N -0.230 5.230 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.067 0.933 37 H 0.200 0.800 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.099 0.901 42 H 0.199 0.801 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -12.091 8.640 -24.227 28.421 hybrid contribution 0.436 -0.581 -0.309 0.789 sum -11.655 8.059 -24.535 28.333 Atomic orbital electron populations 1.21834 0.91417 1.02713 1.03072 1.19686 0.97096 0.95673 0.88445 1.21700 1.01361 0.92427 1.02690 1.21837 1.00627 1.00709 0.95870 1.24100 0.87098 0.86993 0.94773 1.68392 1.24105 1.09952 1.21168 1.23612 0.86453 1.00361 0.85746 1.21532 1.06996 0.98409 0.98922 1.17802 0.77559 0.85755 0.82159 1.90774 1.59672 1.15816 1.79530 1.48383 1.55829 1.12565 1.16797 1.22804 1.00948 0.80303 0.99369 1.22916 1.01211 0.99936 0.92692 1.21418 0.93816 0.92010 0.86878 0.91735 1.42428 1.07557 1.74454 1.13023 1.20365 0.95861 1.36414 0.94103 0.91648 1.27093 0.94128 1.01960 1.05782 1.70965 1.16189 1.46779 1.27997 0.82634 0.74496 0.75742 0.72020 1.20803 1.20301 1.22059 1.23041 0.98225 0.99293 0.82539 1.25473 0.91602 0.90412 0.93157 1.68546 1.11993 1.38814 1.03632 0.93275 0.89070 0.92306 0.92559 0.90051 0.92509 0.92314 0.89056 0.93327 0.80019 0.87604 0.87498 0.87428 0.90135 0.80078 0.94183 0.93093 0.93301 0.76219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 8.37 71.98 0.60 -1.05 16 2 C -0.01 -0.10 0.92 -52.93 -0.05 -0.15 16 3 C -0.12 -1.50 7.66 71.98 0.55 -0.95 16 4 C -0.13 -1.65 8.37 71.98 0.60 -1.05 16 5 C 0.34 6.86 6.25 138.70 0.87 7.73 16 6 N -0.52 -11.80 9.77 -186.80 -1.82 -13.62 16 7 C 0.21 4.90 10.88 85.06 0.93 5.83 16 8 C -0.25 -6.10 5.90 -19.91 -0.12 -6.22 16 9 C 0.58 17.76 7.82 86.78 0.68 18.44 16 10 O -0.58 -22.34 16.77 -3.89 -0.07 -22.41 16 11 N -0.60 -17.32 3.33 -815.96 -2.71 -20.03 16 12 C 0.09 1.68 4.88 86.73 0.42 2.10 16 13 C -0.13 -3.13 6.59 31.78 0.21 -2.92 16 14 C 0.17 6.07 3.70 46.38 0.17 6.25 16 15 H 0.06 2.38 8.11 -2.39 -0.02 2.36 16 16 N -0.73 -34.42 5.26 -316.38 -1.66 -36.09 16 17 C -0.34 -18.20 9.97 84.03 0.84 -17.36 16 18 H 0.07 3.51 7.83 -2.91 -0.02 3.48 16 19 C -0.10 -5.52 5.50 84.86 0.47 -5.05 16 20 N -0.97 -59.00 13.70 21.65 0.30 -58.70 16 21 Si 1.13 51.28 29.92 68.60 2.05 53.33 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 C 0.09 3.46 6.59 86.85 0.57 4.03 16 26 C 0.16 3.13 9.87 85.06 0.84 3.97 16 27 N -0.52 -10.49 8.98 -186.79 -1.68 -12.17 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.85 8.01 -2.39 -0.02 0.83 16 31 H 0.06 0.76 8.04 -2.39 -0.02 0.75 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.77 8.04 -2.39 -0.02 0.75 16 34 H 0.06 0.85 8.01 -2.38 -0.02 0.83 16 35 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.18 4.12 7.76 -2.91 -0.02 4.10 16 38 H 0.11 1.51 6.68 -2.38 -0.02 1.50 16 39 H 0.11 1.50 6.82 -2.38 -0.02 1.48 16 40 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 41 H 0.08 1.99 7.99 -2.39 -0.02 1.97 16 42 H 0.37 17.69 6.56 -92.71 -0.61 17.08 16 43 H 0.25 14.77 6.77 -92.71 -0.63 14.15 16 44 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.05 2.01 8.09 -2.39 -0.02 1.99 16 46 H 0.22 3.14 2.96 -3.25 -0.01 3.13 16 Total: -1.00 -72.16 370.96 2.51 -69.65 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.53 Total: 26.44 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 7.58 Total: 13.60 kcal Atomic # 7 Polarization: -133.03 SS G_CDS: -7.58 Total: -140.61 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.07 Total: -22.41 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 2.05 Total: 53.33 kcal Total: -72.16 2.51 -69.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019880192.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.781 kcal (2) G-P(sol) polarization free energy of solvation -72.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds