Wall clock time and date at job start Fri Apr 10 2020 23:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36939 * 119.99654 * 2 1 4 4 H 1.08000 * 119.99674 * 197.70415 * 3 2 1 5 5 C 1.38812 * 120.00007 * 17.70472 * 3 2 1 6 6 N 1.31619 * 119.99966 * 14.71471 * 5 3 2 7 7 Si 1.86801 * 119.99811 * 194.71516 * 5 3 2 8 8 H 1.48500 * 109.46955 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47275 * 120.00010 * 7 5 3 10 10 H 1.48501 * 109.47144 * 240.00011 * 7 5 3 11 11 C 1.46491 * 120.00013 * 179.97438 * 2 1 3 12 12 H 1.09002 * 109.49725 * 180.02562 * 11 2 1 13 13 C 1.53040 * 109.50097 * 60.00315 * 11 2 1 14 14 C 1.53039 * 109.54424 * 178.64875 * 13 11 2 15 15 C 1.53195 * 109.30790 * 61.36188 * 14 13 11 16 16 N 1.46917 * 108.77769 * 305.36647 * 15 14 13 17 17 C 1.34784 * 120.63279 * 233.58248 * 16 15 14 18 18 O 1.21277 * 120.00117 * 174.41293 * 17 16 15 19 19 C 1.50705 * 119.99707 * 354.42113 * 17 16 15 20 20 C 1.52996 * 109.47075 * 67.48577 * 19 17 16 21 21 C 1.52999 * 109.47038 * 307.48530 * 19 17 16 22 22 C 1.52994 * 109.46645 * 187.48883 * 19 17 16 23 23 C 1.53007 * 109.46822 * 179.97438 * 22 19 17 24 24 F 1.39893 * 109.47645 * 60.00035 * 22 19 17 25 25 F 1.39903 * 109.47036 * 299.99404 * 22 19 17 26 26 C 1.46923 * 118.74065 * 53.86515 * 16 15 14 27 27 H 1.08996 * 109.47558 * 274.51752 * 1 2 3 28 28 H 1.09000 * 109.47061 * 34.52451 * 1 2 3 29 29 H 1.09000 * 109.47103 * 154.51845 * 1 2 3 30 30 H 0.97006 * 119.99710 * 179.97438 * 6 5 3 31 31 H 1.08998 * 109.45982 * 58.62674 * 13 11 2 32 32 H 1.08997 * 109.44986 * 298.66531 * 13 11 2 33 33 H 1.09000 * 109.50002 * 301.41574 * 14 13 11 34 34 H 1.08992 * 109.50217 * 181.31564 * 14 13 11 35 35 H 1.09005 * 109.58048 * 185.58042 * 15 14 13 36 36 H 1.08996 * 109.70007 * 65.23059 * 15 14 13 37 37 H 1.09006 * 109.46908 * 193.70095 * 20 19 17 38 38 H 1.08995 * 109.47218 * 313.69899 * 20 19 17 39 39 H 1.09001 * 109.47079 * 73.70147 * 20 19 17 40 40 H 1.09007 * 109.47087 * 303.69744 * 21 19 17 41 41 H 1.09005 * 109.47317 * 63.69002 * 21 19 17 42 42 H 1.08995 * 109.47043 * 183.69492 * 21 19 17 43 43 H 1.09000 * 109.47187 * 59.99514 * 23 22 19 44 44 H 1.09003 * 109.46588 * 299.99562 * 23 22 19 45 45 H 1.09001 * 109.47048 * 179.97438 * 23 22 19 46 46 H 1.08997 * 109.58953 * 65.92061 * 26 16 15 47 47 H 1.09003 * 109.59226 * 186.35143 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1913 1.2081 -0.2844 5 6 1.5048 2.3596 0.3656 6 7 0.3433 2.3076 0.9824 7 14 2.2857 4.0127 -0.0178 8 1 3.5817 3.7991 -0.7106 9 1 1.3789 4.7972 -0.8940 10 1 2.5175 4.7559 1.2468 11 6 2.1975 -1.2686 0.0006 12 1 3.2692 -1.0700 0.0009 13 6 1.8283 -2.0723 -1.2484 14 6 2.6183 -3.3829 -1.2660 15 6 2.2510 -4.2122 -0.0314 16 7 2.4667 -3.3937 1.1694 17 6 3.2376 -3.8448 2.1788 18 8 3.4908 -3.1213 3.1186 19 6 3.7850 -5.2484 2.1395 20 6 4.8079 -5.3653 1.0077 21 6 2.6412 -6.2353 1.8971 22 6 4.4615 -5.5694 3.4736 23 6 5.0167 -6.9947 3.4339 24 9 3.5262 -5.4625 4.5084 25 9 5.5074 -4.6671 3.6952 26 6 1.8210 -2.0765 1.2519 27 1 -0.3634 0.0809 1.0244 28 1 -0.3633 0.8467 -0.5824 29 1 -0.3633 -0.9277 -0.4421 30 1 -0.1072 3.1278 1.2382 31 1 2.0693 -1.4911 -2.1385 32 1 0.7608 -2.2919 -1.2363 33 1 3.6861 -3.1643 -1.2529 34 1 2.3723 -3.9439 -2.1675 35 1 2.8821 -5.0999 0.0133 36 1 1.2042 -4.5105 -0.0872 37 1 5.0221 -6.4173 0.8188 38 1 4.4038 -4.9089 0.1042 39 1 5.7265 -4.8531 1.2939 40 1 1.8807 -6.1063 2.6674 41 1 2.2014 -6.0483 0.9174 42 1 3.0266 -7.2542 1.9340 43 1 5.7453 -7.0784 2.6276 44 1 4.2015 -7.6974 3.2615 45 1 5.4991 -7.2233 4.3843 46 1 0.7392 -2.2020 1.2973 47 1 2.1681 -1.5545 2.1436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027667543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:50:59 Heat of formation + Delta-G solvation = -94.584963 kcal Electronic energy + Delta-G solvation = -29508.891050 eV Core-core repulsion = 25364.047472 eV Total energy + Delta-G solvation = -4144.843578 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.186 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.88224 -46.84374 -40.50596 -37.54831 -36.26290 -34.97102 -32.32858 -31.34689 -30.38137 -28.53578 -27.76678 -26.01339 -25.95499 -24.44196 -23.58333 -21.82006 -21.06227 -19.55909 -18.73337 -17.34567 -17.08175 -16.83805 -16.71360 -15.85465 -15.31083 -15.13960 -14.85792 -14.46675 -14.22779 -13.98135 -13.68618 -13.57040 -13.35014 -13.20464 -13.06916 -13.05637 -12.94455 -12.60575 -12.44280 -12.28681 -12.18007 -12.03965 -11.89858 -11.81365 -11.53594 -11.12095 -10.99591 -10.81268 -10.78412 -10.46085 -10.38821 -10.28454 -10.14040 -9.82157 -9.75992 -9.40902 -8.57341 -8.30647 -6.79721 -5.70628 -3.12284 2.75447 3.04105 3.40805 3.47854 3.50040 3.56412 3.87936 4.14965 4.21726 4.50753 4.57923 4.68794 4.71207 4.85600 5.04659 5.13695 5.17175 5.23416 5.30136 5.34111 5.40102 5.43676 5.46558 5.49604 5.51998 5.57248 5.70984 5.84502 5.86089 5.88834 5.97915 6.12372 6.21486 6.36057 6.48464 6.66270 6.77427 6.92109 6.97651 7.42761 7.62467 7.72236 7.84540 8.34001 8.40337 9.25090 9.88404 10.34667 11.34739 Molecular weight = 318.19amu Principal moments of inertia in cm(-1) A = 0.020067 B = 0.003721 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.972554 B = 7523.661755 C = 8086.404902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.593 5.593 3 C -0.253 4.253 4 H 0.071 0.929 5 C 0.000 4.000 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.279 1.279 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.170 3.830 12 H 0.064 0.936 13 C -0.133 4.133 14 C -0.133 4.133 15 C 0.086 3.914 16 N -0.601 5.601 17 C 0.519 3.481 18 O -0.521 6.521 19 C -0.125 4.125 20 C -0.157 4.157 21 C -0.164 4.164 22 C 0.313 3.687 23 C -0.197 4.197 24 F -0.193 7.193 25 F -0.189 7.189 26 C 0.098 3.902 27 H 0.026 0.974 28 H 0.049 0.951 29 H -0.002 1.002 30 H 0.252 0.748 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.062 0.938 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.774 -23.197 -2.737 24.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.315 5.315 3 C -0.382 4.382 4 H 0.089 0.911 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.204 1.204 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.060 3.940 12 H 0.083 0.917 13 C -0.173 4.173 14 C -0.172 4.172 15 C -0.037 4.037 16 N -0.334 5.334 17 C 0.305 3.695 18 O -0.396 6.396 19 C -0.130 4.130 20 C -0.214 4.214 21 C -0.220 4.220 22 C 0.276 3.724 23 C -0.254 4.254 24 F -0.174 7.174 25 F -0.170 7.170 26 C -0.025 4.025 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.016 0.984 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.101 0.899 46 H 0.080 0.920 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.784 -22.576 -2.135 23.403 hybrid contribution 0.208 1.108 0.032 1.128 sum 5.992 -21.468 -2.103 22.388 Atomic orbital electron populations 1.20807 0.82397 0.95671 0.99278 1.44004 1.01979 1.00061 1.85431 1.19307 0.95601 0.84395 1.38945 0.91141 1.24926 0.97587 0.98255 0.98979 1.70118 1.16858 1.26301 1.42042 0.86172 0.78484 0.84213 0.77624 1.20367 1.21646 1.21750 1.20685 0.96434 0.86130 0.90722 0.91732 1.22085 0.99631 0.94915 1.00633 1.21944 1.01094 0.97432 0.96685 1.22372 1.01704 0.94484 0.85126 1.48123 1.48865 1.19301 1.17149 1.19993 0.78969 0.87704 0.82833 1.90785 1.57540 1.57331 1.33975 1.21849 0.98704 0.96162 0.96253 1.22190 0.98534 1.03532 0.97158 1.22399 0.96990 0.97859 1.04793 1.20583 0.78142 0.89166 0.84520 1.22892 1.03637 0.93446 1.05467 1.93019 1.66377 1.96914 1.61112 1.93037 1.58169 1.70444 1.95305 1.22662 0.96467 0.80884 1.02501 0.95608 0.93241 0.98374 0.93811 0.91642 0.92228 0.91683 0.91146 0.88331 0.91408 0.90551 0.89586 0.90731 0.91027 0.89099 0.90692 0.89029 0.89009 0.89864 0.91998 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.98 7.92 59.85 0.47 4.46 16 2 N -0.59 -14.83 2.82 -173.09 -0.49 -15.32 16 3 C -0.25 -7.05 9.65 -15.06 -0.15 -7.20 16 4 H 0.07 1.94 7.78 -52.49 -0.41 1.53 16 5 C 0.00 0.01 5.08 -17.43 -0.09 -0.08 16 6 N -0.91 -26.82 10.50 55.49 0.58 -26.24 16 7 Si 0.90 22.31 29.58 -169.99 -5.03 17.29 16 8 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 11 C 0.17 3.46 2.75 -67.59 -0.19 3.28 16 12 H 0.06 1.41 7.83 -51.93 -0.41 1.00 16 13 C -0.13 -2.13 5.13 -26.69 -0.14 -2.27 16 14 C -0.13 -1.55 5.92 -26.61 -0.16 -1.70 16 15 C 0.09 0.94 3.89 -3.71 -0.01 0.93 16 16 N -0.60 -9.36 2.95 -172.50 -0.51 -9.87 16 17 C 0.52 8.64 6.24 -10.98 -0.07 8.58 16 18 O -0.52 -11.35 14.29 5.56 0.08 -11.28 16 19 C -0.13 -1.44 0.24 -155.66 -0.04 -1.47 16 20 C -0.16 -1.35 7.30 37.16 0.27 -1.08 16 21 C -0.16 -1.35 7.59 37.16 0.28 -1.07 16 22 C 0.31 3.94 1.16 -26.73 -0.03 3.91 16 23 C -0.20 -1.47 8.71 37.16 0.32 -1.14 16 24 F -0.19 -2.99 15.88 2.25 0.04 -2.95 16 25 F -0.19 -2.98 15.25 2.25 0.03 -2.95 16 26 C 0.10 1.93 5.82 -3.49 -0.02 1.91 16 27 H 0.03 0.69 7.51 -51.93 -0.39 0.30 16 28 H 0.05 1.31 6.98 -51.93 -0.36 0.95 16 29 H 0.00 -0.05 6.46 -51.93 -0.34 -0.38 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.95 6.72 -51.93 -0.35 0.61 16 33 H 0.06 0.77 7.96 -51.93 -0.41 0.36 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.80 2.71 -51.93 -0.14 0.66 16 36 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 37 H 0.08 0.40 7.15 -51.93 -0.37 0.03 16 38 H 0.09 0.72 4.95 -51.93 -0.26 0.46 16 39 H 0.07 0.74 7.46 -51.93 -0.39 0.35 16 40 H 0.07 0.70 7.91 -51.92 -0.41 0.29 16 41 H 0.09 0.64 4.46 -51.93 -0.23 0.40 16 42 H 0.07 0.40 6.24 -51.93 -0.32 0.08 16 43 H 0.09 0.51 6.76 -51.93 -0.35 0.16 16 44 H 0.09 0.50 6.35 -51.93 -0.33 0.17 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 1.21 7.53 -51.93 -0.39 0.82 16 47 H 0.09 2.15 7.00 -51.93 -0.36 1.79 16 LS Contribution 350.50 15.07 5.28 5.28 Total: -1.00 -34.50 350.50 -6.59 -41.09 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -7.04 Total: -2.09 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 0.47 Total: 7.04 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.42 Total: -51.43 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.07 Total: -5.90 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.50 -6.59 -41.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027667543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.497 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds