Wall clock time and date at job start Fri Apr 10 2020 23:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36939 * 119.99654 * 2 1 4 4 H 1.08000 * 119.99674 * 197.70415 * 3 2 1 5 5 C 1.38812 * 120.00007 * 17.70472 * 3 2 1 6 6 N 1.31619 * 119.99966 * 14.71471 * 5 3 2 7 7 Si 1.86801 * 119.99811 * 194.71516 * 5 3 2 8 8 H 1.48500 * 109.46955 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47275 * 120.00010 * 7 5 3 10 10 H 1.48501 * 109.47144 * 240.00011 * 7 5 3 11 11 C 1.46491 * 120.00013 * 179.97438 * 2 1 3 12 12 H 1.09002 * 109.49725 * 180.02562 * 11 2 1 13 13 C 1.53040 * 109.50097 * 60.00315 * 11 2 1 14 14 C 1.53039 * 109.54424 * 178.64875 * 13 11 2 15 15 C 1.53195 * 109.30790 * 61.36188 * 14 13 11 16 16 N 1.46917 * 108.77769 * 305.36647 * 15 14 13 17 17 C 1.34784 * 120.63279 * 233.58248 * 16 15 14 18 18 O 1.21277 * 120.00117 * 174.41293 * 17 16 15 19 19 C 1.50705 * 119.99707 * 354.42113 * 17 16 15 20 20 C 1.52996 * 109.47075 * 67.48577 * 19 17 16 21 21 C 1.52999 * 109.47038 * 307.48530 * 19 17 16 22 22 C 1.52994 * 109.46645 * 187.48883 * 19 17 16 23 23 C 1.53007 * 109.46822 * 179.97438 * 22 19 17 24 24 F 1.39893 * 109.47645 * 60.00035 * 22 19 17 25 25 F 1.39903 * 109.47036 * 299.99404 * 22 19 17 26 26 C 1.46923 * 118.74065 * 53.86515 * 16 15 14 27 27 H 1.08996 * 109.47558 * 274.51752 * 1 2 3 28 28 H 1.09000 * 109.47061 * 34.52451 * 1 2 3 29 29 H 1.09000 * 109.47103 * 154.51845 * 1 2 3 30 30 H 0.97006 * 119.99710 * 179.97438 * 6 5 3 31 31 H 1.08998 * 109.45982 * 58.62674 * 13 11 2 32 32 H 1.08997 * 109.44986 * 298.66531 * 13 11 2 33 33 H 1.09000 * 109.50002 * 301.41574 * 14 13 11 34 34 H 1.08992 * 109.50217 * 181.31564 * 14 13 11 35 35 H 1.09005 * 109.58048 * 185.58042 * 15 14 13 36 36 H 1.08996 * 109.70007 * 65.23059 * 15 14 13 37 37 H 1.09006 * 109.46908 * 193.70095 * 20 19 17 38 38 H 1.08995 * 109.47218 * 313.69899 * 20 19 17 39 39 H 1.09001 * 109.47079 * 73.70147 * 20 19 17 40 40 H 1.09007 * 109.47087 * 303.69744 * 21 19 17 41 41 H 1.09005 * 109.47317 * 63.69002 * 21 19 17 42 42 H 1.08995 * 109.47043 * 183.69492 * 21 19 17 43 43 H 1.09000 * 109.47187 * 59.99514 * 23 22 19 44 44 H 1.09003 * 109.46588 * 299.99562 * 23 22 19 45 45 H 1.09001 * 109.47048 * 179.97438 * 23 22 19 46 46 H 1.08997 * 109.58953 * 65.92061 * 26 16 15 47 47 H 1.09003 * 109.59226 * 186.35143 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1913 1.2081 -0.2844 5 6 1.5048 2.3596 0.3656 6 7 0.3433 2.3076 0.9824 7 14 2.2857 4.0127 -0.0178 8 1 3.5817 3.7991 -0.7106 9 1 1.3789 4.7972 -0.8940 10 1 2.5175 4.7559 1.2468 11 6 2.1975 -1.2686 0.0006 12 1 3.2692 -1.0700 0.0009 13 6 1.8283 -2.0723 -1.2484 14 6 2.6183 -3.3829 -1.2660 15 6 2.2510 -4.2122 -0.0314 16 7 2.4667 -3.3937 1.1694 17 6 3.2376 -3.8448 2.1788 18 8 3.4908 -3.1213 3.1186 19 6 3.7850 -5.2484 2.1395 20 6 4.8079 -5.3653 1.0077 21 6 2.6412 -6.2353 1.8971 22 6 4.4615 -5.5694 3.4736 23 6 5.0167 -6.9947 3.4339 24 9 3.5262 -5.4625 4.5084 25 9 5.5074 -4.6671 3.6952 26 6 1.8210 -2.0765 1.2519 27 1 -0.3634 0.0809 1.0244 28 1 -0.3633 0.8467 -0.5824 29 1 -0.3633 -0.9277 -0.4421 30 1 -0.1072 3.1278 1.2382 31 1 2.0693 -1.4911 -2.1385 32 1 0.7608 -2.2919 -1.2363 33 1 3.6861 -3.1643 -1.2529 34 1 2.3723 -3.9439 -2.1675 35 1 2.8821 -5.0999 0.0133 36 1 1.2042 -4.5105 -0.0872 37 1 5.0221 -6.4173 0.8188 38 1 4.4038 -4.9089 0.1042 39 1 5.7265 -4.8531 1.2939 40 1 1.8807 -6.1063 2.6674 41 1 2.2014 -6.0483 0.9174 42 1 3.0266 -7.2542 1.9340 43 1 5.7453 -7.0784 2.6276 44 1 4.2015 -7.6974 3.2615 45 1 5.4991 -7.2233 4.3843 46 1 0.7392 -2.2020 1.2973 47 1 2.1681 -1.5545 2.1436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027667543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:50:58 Heat of formation + Delta-G solvation = -117.743520 kcal Electronic energy + Delta-G solvation = -29509.895281 eV Core-core repulsion = 25364.047472 eV Total energy + Delta-G solvation = -4145.847808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.186 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.92117 -47.92826 -41.72440 -39.03551 -37.41077 -36.56855 -33.92293 -32.86184 -31.39129 -29.99000 -28.39869 -28.10290 -27.09340 -25.43544 -25.29116 -23.11163 -22.33269 -20.80389 -20.07119 -18.85817 -18.35491 -18.13979 -17.90117 -17.14046 -16.81701 -16.32349 -16.27666 -15.83483 -15.44130 -15.34076 -15.06757 -14.84591 -14.50543 -14.37058 -14.28862 -14.20581 -13.87678 -13.81892 -13.71959 -13.41196 -13.35552 -13.21364 -12.90454 -12.77970 -12.73943 -12.61996 -12.42252 -12.29729 -12.19250 -12.08668 -12.04290 -11.81859 -11.69174 -11.42787 -11.33055 -10.68239 -10.62519 -9.73333 -8.84674 -7.87673 -5.31535 1.41542 1.42932 1.51025 1.53603 1.83891 2.47650 2.67530 3.08145 3.24769 3.25739 3.40215 3.58373 3.73240 3.94956 3.96146 4.03034 4.06342 4.06814 4.19780 4.34079 4.52276 4.55494 4.60882 4.66700 4.67149 4.73683 4.74843 4.79281 4.83023 4.85918 4.91386 5.02464 5.03087 5.15625 5.24785 5.25206 5.27607 5.42264 5.46125 5.55307 5.57992 5.69959 6.26697 6.38382 7.07651 7.11013 7.83336 8.23532 9.15888 Molecular weight = 318.19amu Principal moments of inertia in cm(-1) A = 0.020067 B = 0.003721 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.972554 B = 7523.661755 C = 8086.404902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.611 5.611 3 C -0.264 4.264 4 H 0.067 0.933 5 C -0.055 4.055 6 N -0.939 5.939 7 Si 0.969 3.031 8 H -0.267 1.267 9 H -0.285 1.285 10 H -0.296 1.296 11 C 0.168 3.832 12 H 0.041 0.959 13 C -0.122 4.122 14 C -0.125 4.125 15 C 0.078 3.922 16 N -0.598 5.598 17 C 0.505 3.495 18 O -0.590 6.590 19 C -0.117 4.117 20 C -0.157 4.157 21 C -0.162 4.162 22 C 0.287 3.713 23 C -0.187 4.187 24 F -0.219 7.219 25 F -0.217 7.217 26 C 0.113 3.887 27 H -0.007 1.007 28 H 0.023 0.977 29 H 0.037 0.963 30 H 0.248 0.752 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.116 0.884 35 H 0.139 0.861 36 H 0.090 0.910 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.082 0.918 46 H 0.061 0.939 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.547 -27.316 -5.549 28.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.333 5.333 3 C -0.394 4.394 4 H 0.085 0.915 5 C -0.249 4.249 6 N -0.586 5.586 7 Si 0.797 3.203 8 H -0.192 1.192 9 H -0.211 1.211 10 H -0.223 1.223 11 C 0.060 3.940 12 H 0.059 0.941 13 C -0.162 4.162 14 C -0.163 4.163 15 C -0.042 4.042 16 N -0.330 5.330 17 C 0.294 3.706 18 O -0.469 6.469 19 C -0.121 4.121 20 C -0.213 4.213 21 C -0.218 4.218 22 C 0.251 3.749 23 C -0.244 4.244 24 F -0.200 7.200 25 F -0.198 7.198 26 C -0.012 4.012 27 H 0.011 0.989 28 H 0.041 0.959 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.134 0.866 35 H 0.156 0.844 36 H 0.108 0.892 37 H 0.145 0.855 38 H 0.111 0.889 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.128 0.872 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.101 0.899 46 H 0.079 0.921 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.572 -26.765 -4.999 28.010 hybrid contribution -0.005 2.366 0.952 2.550 sum 6.567 -24.399 -4.048 25.590 Atomic orbital electron populations 1.20494 0.82293 0.96387 0.97094 1.44242 1.02345 1.01045 1.85697 1.19608 0.95702 0.85945 1.38183 0.91483 1.25705 0.98358 1.01554 0.99323 1.70285 1.18231 1.26721 1.43389 0.85172 0.78103 0.79928 0.77068 1.19168 1.21104 1.22320 1.20866 0.94621 0.85208 0.93315 0.94110 1.21922 1.00732 0.96472 0.97044 1.21955 1.00205 0.95254 0.98882 1.22858 1.04135 0.94818 0.82409 1.48174 1.48007 1.17976 1.18858 1.21181 0.78031 0.89724 0.81707 1.90750 1.59910 1.59699 1.36587 1.21959 1.00420 0.92698 0.96983 1.22306 0.96646 1.06699 0.95675 1.22507 0.95293 0.99018 1.05012 1.21540 0.77545 0.91534 0.84270 1.22948 1.05029 0.89675 1.06705 1.92963 1.67405 1.97174 1.62447 1.92976 1.59355 1.71967 1.95490 1.22075 0.96313 0.83118 0.99695 0.98905 0.95867 0.94482 0.94272 0.92416 0.91629 0.91813 0.86554 0.84359 0.89198 0.85540 0.88902 0.92588 0.93053 0.87197 0.86387 0.86378 0.86160 0.89858 0.92094 0.94549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.19 7.92 127.77 1.01 10.20 16 2 N -0.61 -31.70 2.82 -701.54 -1.98 -33.68 16 3 C -0.26 -15.30 9.65 84.03 0.81 -14.49 16 4 H 0.07 3.83 7.78 -2.91 -0.02 3.81 16 5 C -0.05 -3.21 5.08 84.86 0.43 -2.78 16 6 N -0.94 -57.96 10.50 21.65 0.23 -57.73 16 7 Si 0.97 47.24 29.58 68.60 2.03 49.27 16 8 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 9 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 10 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 11 C 0.17 7.02 2.75 45.22 0.12 7.15 16 12 H 0.04 1.86 7.83 -2.39 -0.02 1.84 16 13 C -0.12 -3.69 5.13 30.62 0.16 -3.53 16 14 C -0.12 -2.37 5.92 30.67 0.18 -2.19 16 15 C 0.08 1.38 3.89 86.37 0.34 1.72 16 16 N -0.60 -18.33 2.95 -818.07 -2.42 -20.75 16 17 C 0.50 17.04 6.24 87.66 0.55 17.59 16 18 O -0.59 -27.65 14.29 -3.02 -0.04 -27.70 16 19 C -0.12 -2.40 0.24 -52.93 -0.01 -2.41 16 20 C -0.16 -2.03 7.30 71.98 0.53 -1.51 16 21 C -0.16 -1.94 7.59 71.98 0.55 -1.39 16 22 C 0.29 6.94 1.16 30.59 0.04 6.98 16 23 C -0.19 -2.07 8.71 71.98 0.63 -1.44 16 24 F -0.22 -6.91 15.88 44.97 0.71 -6.19 16 25 F -0.22 -7.06 15.25 44.97 0.69 -6.37 16 26 C 0.11 4.65 5.82 86.51 0.50 5.16 16 27 H -0.01 -0.42 7.51 -2.39 -0.02 -0.44 16 28 H 0.02 1.26 6.98 -2.39 -0.02 1.24 16 29 H 0.04 1.54 6.46 -2.39 -0.02 1.53 16 30 H 0.25 14.82 8.31 -92.70 -0.77 14.04 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 1.91 6.72 -2.39 -0.02 1.89 16 33 H 0.06 1.28 7.96 -2.39 -0.02 1.26 16 34 H 0.12 1.32 8.14 -2.39 -0.02 1.31 16 35 H 0.14 1.42 2.71 -2.38 -0.01 1.41 16 36 H 0.09 1.32 8.06 -2.39 -0.02 1.30 16 37 H 0.13 0.42 7.15 -2.38 -0.02 0.40 16 38 H 0.09 1.08 4.95 -2.39 -0.01 1.07 16 39 H 0.05 0.98 7.46 -2.39 -0.02 0.96 16 40 H 0.05 0.87 7.91 -2.38 -0.02 0.85 16 41 H 0.11 0.87 4.46 -2.38 -0.01 0.86 16 42 H 0.12 0.45 6.24 -2.39 -0.01 0.43 16 43 H 0.12 0.68 6.76 -2.39 -0.02 0.67 16 44 H 0.12 0.63 6.35 -2.39 -0.02 0.62 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.06 2.48 7.53 -2.39 -0.02 2.46 16 47 H 0.04 1.87 7.00 -2.39 -0.02 1.86 16 Total: -1.00 -86.38 350.50 6.02 -80.35 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 0.98 Total: 3.73 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 5.82 Total: 19.06 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -4.17 Total: -112.15 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.04 Total: -27.70 kcal Atomic # 9 Polarization: -13.97 SS G_CDS: 1.40 Total: -12.57 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -86.38 6.02 -80.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027667543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.390 kcal (2) G-P(sol) polarization free energy of solvation -86.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds