Wall clock time and date at job start Fri Apr 10 2020 23:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47388 * 2 1 4 4 C 1.35396 * 126.43976 * 265.14246 * 3 2 1 5 5 C 1.35565 * 107.16305 * 180.23902 * 4 3 2 6 6 N 1.33099 * 108.34531 * 359.76894 * 5 4 3 7 7 C 1.31614 * 109.09894 * 0.02562 * 6 5 4 8 8 C 1.47411 * 125.86700 * 179.97438 * 7 6 5 9 9 O 1.21607 * 120.00101 * 180.02562 * 8 7 6 10 10 N 1.34783 * 119.99748 * 0.03065 * 8 7 6 11 11 C 1.46501 * 119.99838 * 179.97438 * 10 8 7 12 12 C 1.54318 * 111.68937 * 298.98476 * 11 10 8 13 13 C 1.55057 * 103.93609 * 261.93009 * 12 11 10 14 14 C 1.55062 * 102.10704 * 319.94090 * 13 12 11 15 15 C 1.54317 * 103.93290 * 40.06009 * 14 13 12 16 16 H 1.09004 * 112.36597 * 97.60714 * 15 14 13 17 17 C 1.53778 * 109.06358 * 222.02840 * 15 14 13 18 18 N 1.47212 * 106.37731 * 94.89325 * 17 15 14 19 19 C 1.36945 * 126.70068 * 211.28081 * 18 17 15 20 20 H 1.07996 * 119.99825 * 180.02562 * 19 18 17 21 21 C 1.38807 * 119.99796 * 0.02562 * 19 18 17 22 22 N 1.31614 * 120.00447 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99688 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47200 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46950 * 119.99567 * 23 21 19 26 26 H 1.48503 * 109.47031 * 239.99641 * 23 21 19 27 27 C 1.47211 * 106.60051 * 31.28320 * 18 17 15 28 28 H 1.08999 * 109.47014 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47293 * 300.00048 * 1 2 3 30 30 H 1.09003 * 109.47065 * 60.00271 * 1 2 3 31 31 H 1.09003 * 109.47293 * 239.99952 * 2 1 3 32 32 H 1.09003 * 109.47065 * 119.99729 * 2 1 3 33 33 H 1.08009 * 126.42035 * 359.97190 * 4 3 2 34 34 H 1.07993 * 125.82495 * 179.79670 * 5 4 3 35 35 H 0.97003 * 119.99794 * 359.97438 * 10 8 7 36 36 H 1.09002 * 110.53698 * 143.31635 * 12 11 10 37 37 H 1.09000 * 110.54171 * 20.53899 * 12 11 10 38 38 H 1.08996 * 110.91011 * 78.14164 * 13 12 11 39 39 H 1.09004 * 110.90322 * 201.74756 * 13 12 11 40 40 H 1.08998 * 110.53338 * 158.66793 * 14 13 12 41 41 H 1.09000 * 110.53663 * 281.44554 * 14 13 12 42 42 H 1.08996 * 110.07597 * 335.66659 * 17 15 14 43 43 H 1.09006 * 110.07843 * 214.11844 * 17 15 14 44 44 H 0.97003 * 120.00370 * 180.02562 * 22 21 19 45 45 H 1.08995 * 110.07363 * 209.49206 * 27 18 17 46 46 H 1.09002 * 110.07561 * 87.94357 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3734 2.1087 -1.0853 5 6 2.7694 3.3260 -0.6389 6 7 2.6542 3.3438 0.6869 7 6 2.1990 2.1783 1.0953 8 6 1.9345 1.7965 2.4944 9 8 1.5130 0.6853 2.7521 10 7 2.1596 2.6791 3.4878 11 6 1.8962 2.2999 4.8782 12 6 0.4110 1.9446 5.1008 13 6 -0.1989 3.2421 5.6914 14 6 0.9201 3.7190 6.6531 15 6 2.2230 3.4393 5.8749 16 1 2.6006 4.3261 5.3658 17 6 3.2665 2.8491 6.8381 18 7 3.1703 1.3859 6.7083 19 6 3.4085 0.4598 7.6887 20 1 3.3053 -0.5934 7.4732 21 6 3.7824 0.8750 8.9593 22 7 3.9086 2.1585 9.2218 23 14 4.1066 -0.3882 10.2969 24 1 3.8966 -1.7529 9.7503 25 1 5.5066 -0.2556 10.7741 26 1 3.1738 -0.1602 11.4296 27 6 2.7682 1.1124 5.3188 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3501 1.7793 -2.1137 34 1 3.1183 4.1421 -1.2542 35 1 2.4961 3.5654 3.2822 36 1 0.3168 1.1212 5.8087 37 1 -0.0681 1.6933 4.1545 38 1 -0.3788 3.9788 4.9085 39 1 -1.1164 3.0264 6.2390 40 1 0.8190 4.7846 6.8589 41 1 0.8977 3.1458 7.5799 42 1 3.0428 3.1494 7.8617 43 1 4.2654 3.1845 6.5589 44 1 4.1703 2.4486 10.1097 45 1 2.1930 0.1878 5.2709 46 1 3.6496 1.0388 4.6818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098817139.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:51:47 Heat of formation + Delta-G solvation = 54.838738 kcal Electronic energy + Delta-G solvation = -27991.909693 eV Core-core repulsion = 24304.234799 eV Total energy + Delta-G solvation = -3687.674894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.36512 -40.03304 -37.95290 -35.29768 -34.36087 -33.31725 -31.43091 -30.56280 -29.91600 -29.21253 -27.60208 -24.72641 -24.59925 -24.09609 -22.92460 -21.55937 -20.68223 -20.50037 -19.16878 -18.78168 -17.70973 -16.94624 -16.19386 -15.82253 -15.61084 -14.93310 -14.66754 -14.61491 -14.08226 -13.99206 -13.89068 -13.63701 -13.46364 -13.35386 -13.07210 -12.82451 -12.56151 -12.29125 -11.83737 -11.56339 -11.28674 -11.01729 -10.90393 -10.64265 -10.55021 -10.31333 -10.25757 -10.18096 -10.07617 -9.96443 -9.92020 -9.88374 -9.71993 -9.53398 -8.82794 -8.65971 -8.51265 -6.82854 -5.61793 -3.06175 1.36838 2.37132 2.57807 3.38978 3.41754 3.47576 3.49737 3.52289 4.35564 4.45792 4.50997 4.67506 4.78270 4.95649 5.04898 5.14652 5.18135 5.27228 5.40464 5.43317 5.52350 5.53394 5.69719 5.86184 5.87646 5.91861 6.06395 6.09737 6.15101 6.17346 6.27868 6.39096 6.44445 6.47984 6.59621 6.66720 6.79695 6.80915 6.86422 7.00311 7.12988 7.47209 7.59435 7.65324 7.84870 7.91448 8.36047 8.44895 9.23966 9.84261 10.51622 11.39497 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.003623 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.937033 B = 7727.503455 C = 8087.950241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 N -0.414 5.414 4 C -0.037 4.037 5 C -0.030 4.030 6 N -0.449 5.449 7 C 0.148 3.852 8 C 0.603 3.397 9 O -0.534 6.534 10 N -0.682 5.682 11 C 0.157 3.843 12 C -0.110 4.110 13 C -0.126 4.126 14 C -0.107 4.107 15 C -0.113 4.113 16 H 0.072 0.928 17 C 0.138 3.862 18 N -0.592 5.592 19 C -0.214 4.214 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.921 5.921 23 Si 0.914 3.086 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.141 3.859 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.180 0.820 34 H 0.176 0.824 35 H 0.407 0.593 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.130 0.870 43 H 0.004 0.996 44 H 0.252 0.748 45 H 0.052 0.948 46 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.000 1.699 -19.446 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.026 4.026 3 N -0.094 5.094 4 C -0.175 4.175 5 C -0.183 4.183 6 N -0.170 5.170 7 C -0.112 4.112 8 C 0.387 3.613 9 O -0.410 6.410 10 N -0.332 5.332 11 C 0.071 3.929 12 C -0.149 4.149 13 C -0.163 4.163 14 C -0.145 4.145 15 C -0.133 4.133 16 H 0.090 0.910 17 C 0.013 3.987 18 N -0.316 5.316 19 C -0.342 4.342 20 H 0.097 0.903 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.013 3.987 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.131 0.869 33 H 0.197 0.803 34 H 0.193 0.807 35 H 0.243 0.757 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.148 0.852 43 H 0.022 0.978 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -7.110 1.300 -18.402 19.770 hybrid contribution 0.352 -0.769 -0.401 0.936 sum -6.757 0.531 -18.803 19.987 Atomic orbital electron populations 1.22055 0.93561 1.03387 1.02940 1.22135 0.96333 0.78779 1.05402 1.45290 1.45144 1.12859 1.06116 1.22871 1.07407 0.94160 0.93039 1.22398 1.07306 0.97534 0.91093 1.70214 1.15391 1.18893 1.12544 1.22876 1.09415 0.88335 0.90538 1.16432 0.78400 0.84816 0.81694 1.90798 1.46431 1.20444 1.83352 1.45733 1.65042 1.16700 1.05716 1.21926 0.95862 0.96986 0.78136 1.22647 0.93590 0.97907 1.00728 1.22611 0.98088 0.97136 0.98485 1.22433 0.92947 1.00220 0.98890 1.23024 0.98460 0.95884 0.95950 0.90961 1.22058 0.92462 0.83251 1.00941 1.44456 1.79426 1.02423 1.05338 1.19146 1.38309 0.87968 0.88803 0.90332 1.24748 1.02131 0.96314 0.97504 1.69597 1.54597 1.12313 1.20544 0.85987 0.77485 0.80173 0.81822 1.20560 1.21805 1.21750 1.21537 0.94783 0.94956 0.87406 0.90361 0.91167 0.92495 0.89179 0.86942 0.80296 0.80726 0.75704 0.90206 0.91927 0.92441 0.92113 0.92444 0.90043 0.85245 0.97766 0.93731 0.92950 0.96894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 10.23 37.16 0.38 -1.06 16 2 C 0.09 0.92 6.18 -4.04 -0.02 0.89 16 3 N -0.41 -4.88 2.76 -114.58 -0.32 -5.20 16 4 C -0.04 -0.35 11.53 -16.93 -0.20 -0.54 16 5 C -0.03 -0.33 11.85 -17.96 -0.21 -0.54 16 6 N -0.45 -6.43 10.89 -11.26 -0.12 -6.55 16 7 C 0.15 2.19 7.79 -154.52 -1.20 0.98 16 8 C 0.60 10.01 7.10 -12.52 -0.09 9.92 16 9 O -0.53 -9.60 12.41 5.27 0.07 -9.54 16 10 N -0.68 -11.33 5.20 -46.74 -0.24 -11.57 16 11 C 0.16 2.94 0.95 -129.73 -0.12 2.82 16 12 C -0.11 -1.96 5.49 -24.95 -0.14 -2.09 16 13 C -0.13 -1.97 6.92 -24.55 -0.17 -2.14 16 14 C -0.11 -1.88 6.23 -24.95 -0.16 -2.04 16 15 C -0.11 -2.15 3.69 -88.54 -0.33 -2.48 16 16 H 0.07 1.24 7.76 -51.93 -0.40 0.83 16 17 C 0.14 3.34 5.56 -3.25 -0.02 3.32 16 18 N -0.59 -15.31 3.39 -171.14 -0.58 -15.89 16 19 C -0.21 -5.99 10.34 -15.06 -0.16 -6.14 16 20 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 21 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 22 N -0.92 -26.40 10.08 55.49 0.56 -25.85 16 23 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 C 0.14 3.18 5.23 -3.25 -0.02 3.17 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.81 7.84 -51.93 -0.41 0.41 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.59 8.13 -51.93 -0.42 0.17 16 32 H 0.11 1.32 6.64 -51.93 -0.34 0.97 16 33 H 0.18 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.41 6.24 8.03 -40.82 -0.33 5.92 16 36 H 0.08 1.57 7.56 -51.93 -0.39 1.17 16 37 H 0.06 1.09 6.67 -51.93 -0.35 0.74 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.66 7.56 -51.93 -0.39 1.27 16 42 H 0.13 3.45 4.88 -51.93 -0.25 3.20 16 43 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 44 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.05 1.22 7.50 -51.93 -0.39 0.83 16 46 H 0.01 0.32 8.06 -51.93 -0.42 -0.10 16 LS Contribution 361.92 15.07 5.45 5.45 Total: -1.00 -31.68 361.92 -9.78 -41.45 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -7.03 Total: 6.98 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -2.54 Total: 3.63 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: -0.70 Total: -65.06 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.07 Total: -9.54 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.68 -9.78 -41.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098817139.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.292 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds