Wall clock time and date at job start Fri Apr 10 2020 23:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47202 * 2 1 4 4 C 1.52998 * 109.47075 * 239.99661 * 2 1 3 5 5 C 1.53002 * 109.46858 * 65.00172 * 4 2 1 6 6 F 1.39898 * 109.47393 * 294.99572 * 5 4 2 7 7 F 1.39905 * 109.46877 * 175.00085 * 5 4 2 8 8 C 1.50701 * 109.46863 * 119.99494 * 2 1 3 9 9 O 1.21285 * 119.99338 * 119.99959 * 8 2 1 10 10 N 1.34773 * 120.00383 * 299.99802 * 8 2 1 11 11 C 1.46495 * 120.00200 * 180.02562 * 10 8 2 12 12 C 1.52998 * 109.47474 * 175.98440 * 11 10 8 13 13 N 1.46501 * 109.46907 * 305.24932 * 12 11 10 14 14 C 1.36939 * 119.99978 * 300.07718 * 13 12 11 15 15 H 1.08003 * 120.00003 * 354.07579 * 14 13 12 16 16 C 1.38813 * 120.00092 * 174.06634 * 14 13 12 17 17 N 1.31618 * 120.00118 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99995 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47277 * 90.00309 * 18 16 14 20 20 H 1.48504 * 109.47289 * 210.00660 * 18 16 14 21 21 H 1.48502 * 109.47136 * 330.00148 * 18 16 14 22 22 C 1.53002 * 109.47474 * 185.25069 * 12 11 10 23 23 C 1.52998 * 109.47107 * 179.97438 * 22 12 11 24 24 C 1.53001 * 109.47102 * 59.99936 * 23 22 12 25 25 C 1.53002 * 109.47193 * 300.00012 * 24 23 22 26 26 C 1.52998 * 109.47107 * 59.99991 * 25 24 23 27 27 H 1.09001 * 109.47090 * 300.00517 * 1 2 3 28 28 H 1.09004 * 109.47139 * 59.99962 * 1 2 3 29 29 H 1.08996 * 109.47116 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47258 * 305.00325 * 4 2 1 31 31 H 1.09001 * 109.47220 * 185.00114 * 4 2 1 32 32 H 1.08998 * 109.47268 * 55.00230 * 5 4 2 33 33 H 0.97005 * 119.99612 * 0.02562 * 10 8 2 34 34 H 1.09003 * 109.47108 * 295.98374 * 11 10 8 35 35 H 1.09001 * 109.46974 * 55.97946 * 11 10 8 36 36 H 0.96994 * 120.00529 * 120.07590 * 13 12 11 37 37 H 0.97000 * 120.00329 * 179.97438 * 17 16 14 38 38 H 1.08996 * 109.46688 * 300.00142 * 22 12 11 39 39 H 1.09000 * 109.47027 * 59.99649 * 22 12 11 40 40 H 1.09000 * 109.47071 * 299.99862 * 23 22 12 41 41 H 1.09002 * 109.47011 * 179.97438 * 23 22 12 42 42 H 1.08998 * 109.47387 * 179.97438 * 24 23 22 43 43 H 1.09009 * 109.46802 * 59.99647 * 24 23 22 44 44 H 1.08996 * 109.46573 * 299.99989 * 25 24 23 45 45 H 1.09000 * 109.47027 * 179.97438 * 25 24 23 46 46 H 1.09002 * 109.47011 * 180.02562 * 26 25 24 47 47 H 1.09000 * 109.47457 * 59.99761 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6352 0.0689 -2.4953 6 9 0.2412 0.0721 -2.6131 7 9 2.1975 -0.5279 -3.6289 8 6 2.0323 -0.7103 1.2305 9 8 2.7295 -1.6964 1.1192 10 7 1.7067 -0.2498 2.4546 11 6 2.1955 -0.9400 3.6508 12 6 1.7696 -0.1628 4.8979 13 7 2.2289 1.2242 4.7895 14 6 3.5658 1.4953 4.6696 15 1 4.2882 0.6966 4.7509 16 6 3.9925 2.7967 4.4433 17 7 3.1121 3.7701 4.3445 18 14 5.8161 3.1664 4.2790 19 1 6.2182 3.0510 2.8542 20 1 6.0870 4.5452 4.7597 21 1 6.5930 2.1971 5.0928 22 6 2.3891 -0.8096 6.1384 23 6 1.9637 -0.0320 7.3854 24 6 0.4386 -0.0557 7.5057 25 6 -0.1809 0.5911 6.2652 26 6 0.2445 -0.1866 5.0182 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6053 -1.7198 -1.2951 31 1 3.1263 -0.7996 -1.2055 32 1 1.9949 1.0941 -2.4081 33 1 1.1488 0.5387 2.5435 34 1 1.7749 -1.9449 3.6878 35 1 3.2831 -1.0024 3.6153 36 1 1.5861 1.9504 4.8026 37 1 3.4103 4.6796 4.1868 38 1 2.0475 -1.8415 6.2190 39 1 3.4756 -0.7923 6.0529 40 1 2.3058 0.9998 7.3045 41 1 2.4047 -0.4931 8.2692 42 1 0.1355 0.4979 8.3943 43 1 0.0966 -1.0876 7.5866 44 1 0.1611 1.6228 6.1844 45 1 -1.2674 0.5737 6.3507 46 1 -0.1965 0.2746 4.1344 47 1 -0.0975 -1.2184 5.0991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115631563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:52:47 Heat of formation + Delta-G solvation = -174.407557 kcal Electronic energy + Delta-G solvation = -28565.072556 eV Core-core repulsion = 24416.767611 eV Total energy + Delta-G solvation = -4148.304946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.186 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.95271 -47.96875 -41.10301 -39.92836 -36.00949 -35.80740 -35.03680 -32.79116 -31.55307 -30.50671 -29.79847 -26.94002 -25.69151 -25.38352 -23.59318 -23.03598 -21.72639 -20.88937 -19.78768 -19.04710 -18.79737 -18.38168 -17.77436 -17.01271 -16.85540 -16.53208 -16.26693 -15.88727 -15.62957 -15.27558 -15.13467 -14.93662 -14.64178 -14.57878 -14.40418 -14.28616 -13.92754 -13.61871 -13.38415 -13.35743 -13.21146 -12.91846 -12.82830 -12.61829 -12.58417 -12.48028 -12.24013 -12.09268 -12.04485 -11.91147 -11.80754 -11.68058 -11.21115 -11.13265 -10.85910 -10.68782 -10.59810 -9.85896 -8.88711 -7.86777 -5.10434 1.43846 1.47727 1.51978 1.72080 2.28125 2.58973 2.97627 3.36966 3.43385 3.46556 3.63867 3.82667 3.90551 3.92896 4.04612 4.08962 4.14405 4.18868 4.39034 4.42405 4.49445 4.67094 4.71360 4.76510 4.78171 4.82432 4.83481 4.91862 4.95782 4.98472 5.07421 5.09221 5.19468 5.23124 5.32466 5.47347 5.49623 5.52097 5.59628 5.61996 5.72443 5.80306 6.36418 6.69985 7.34557 7.45679 8.18440 8.44969 9.35446 Molecular weight = 318.19amu Principal moments of inertia in cm(-1) A = 0.011621 B = 0.004232 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.828123 B = 6615.016470 C = 8025.007873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.104 4.104 3 H 0.115 0.885 4 C -0.146 4.146 5 C 0.266 3.734 6 F -0.205 7.205 7 F -0.218 7.218 8 C 0.510 3.490 9 O -0.595 6.595 10 N -0.692 5.692 11 C 0.122 3.878 12 C 0.189 3.811 13 N -0.707 5.707 14 C -0.204 4.204 15 H 0.059 0.941 16 C -0.061 4.061 17 N -0.958 5.958 18 Si 0.942 3.058 19 H -0.297 1.297 20 H -0.299 1.299 21 H -0.282 1.282 22 C -0.116 4.116 23 C -0.106 4.106 24 C -0.108 4.108 25 C -0.112 4.112 26 C -0.108 4.108 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.144 0.856 33 H 0.407 0.593 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.378 0.622 37 H 0.246 0.754 38 H 0.071 0.929 39 H 0.036 0.964 40 H 0.042 0.958 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.815 -7.273 -4.910 13.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.126 4.126 3 H 0.133 0.867 4 C -0.185 4.185 5 C 0.212 3.788 6 F -0.187 7.187 7 F -0.199 7.199 8 C 0.297 3.703 9 O -0.477 6.477 10 N -0.341 5.341 11 C -0.004 4.004 12 C 0.099 3.901 13 N -0.348 5.348 14 C -0.337 4.337 15 H 0.077 0.923 16 C -0.254 4.254 17 N -0.609 5.609 18 Si 0.774 3.226 19 H -0.225 1.225 20 H -0.226 1.226 21 H -0.207 1.207 22 C -0.156 4.156 23 C -0.144 4.144 24 C -0.146 4.146 25 C -0.150 4.150 26 C -0.146 4.146 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.161 0.839 33 H 0.244 0.756 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.212 0.788 37 H 0.056 0.944 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.094 0.906 46 H 0.081 0.919 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.172 -7.992 -4.996 13.151 hybrid contribution 1.250 1.022 -0.058 1.616 sum -7.922 -6.970 -5.053 11.700 Atomic orbital electron populations 1.22139 0.90738 1.03301 1.04997 1.21190 0.99422 1.01052 0.90886 0.86688 1.22370 1.03939 1.00423 0.91752 1.22133 0.74274 1.00012 0.82339 1.92881 1.31982 1.97768 1.96034 1.92961 1.85062 1.86875 1.55020 1.20926 0.79486 0.84164 0.85678 1.90639 1.40515 1.28935 1.87590 1.45709 1.52064 1.31427 1.04923 1.21709 0.97757 0.95112 0.85838 1.20036 0.93906 0.84945 0.91257 1.42451 1.03875 1.01585 1.86910 1.19163 0.85243 0.91931 1.37321 0.92323 1.25091 0.99202 0.96423 1.04653 1.69732 1.32709 0.99530 1.58967 0.85609 0.83318 0.76522 0.77116 1.22461 1.22625 1.20732 1.21807 0.99411 0.98801 0.95552 1.21310 0.96571 1.00003 0.96514 1.21457 0.94443 1.01097 0.97555 1.21438 1.00112 0.98998 0.94454 1.21668 0.93092 1.01425 0.98369 0.91311 0.88299 0.92407 0.89860 0.88915 0.83871 0.75637 0.91894 0.95040 0.78824 0.94444 0.91000 0.94546 0.93958 0.92470 0.92127 0.90855 0.93716 0.90628 0.91879 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.54 71.98 0.61 -2.43 16 2 C -0.10 -2.50 2.72 -11.54 -0.03 -2.53 16 3 H 0.12 2.54 8.14 -2.38 -0.02 2.52 16 4 C -0.15 -3.33 4.36 30.59 0.13 -3.19 16 5 C 0.27 4.97 5.25 71.98 0.38 5.34 16 6 F -0.21 -4.13 14.15 44.97 0.64 -3.49 16 7 F -0.22 -4.94 17.34 44.97 0.78 -4.16 16 8 C 0.51 16.75 7.15 87.66 0.63 17.38 16 9 O -0.59 -23.82 15.92 -3.05 -0.05 -23.86 16 10 N -0.69 -22.49 5.03 -463.07 -2.33 -24.82 16 11 C 0.12 4.24 4.32 86.38 0.37 4.61 16 12 C 0.19 6.25 0.40 3.60 0.00 6.25 16 13 N -0.71 -29.62 3.55 -303.34 -1.08 -30.70 16 14 C -0.20 -10.15 8.72 84.03 0.73 -9.42 16 15 H 0.06 3.02 6.75 -2.91 -0.02 3.00 16 16 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 17 N -0.96 -53.50 13.07 21.65 0.28 -53.21 16 18 Si 0.94 45.04 29.55 68.60 2.03 47.07 16 19 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 20 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 21 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 22 C -0.12 -3.71 4.56 30.59 0.14 -3.57 16 23 C -0.11 -3.27 5.77 30.59 0.18 -3.10 16 24 C -0.11 -2.69 5.92 30.60 0.18 -2.50 16 25 C -0.11 -2.91 5.75 30.59 0.18 -2.73 16 26 C -0.11 -2.82 4.65 30.59 0.14 -2.68 16 27 H 0.07 1.28 7.56 -2.39 -0.02 1.27 16 28 H 0.10 1.72 5.43 -2.39 -0.01 1.71 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.09 2.31 7.95 -2.39 -0.02 2.29 16 32 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.41 12.55 6.69 -92.70 -0.62 11.93 16 34 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.03 1.31 7.58 -2.39 -0.02 1.29 16 36 H 0.38 17.09 6.53 -92.71 -0.61 16.48 16 37 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 38 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.04 1.34 7.17 -2.39 -0.02 1.33 16 40 H 0.04 1.63 7.60 -2.39 -0.02 1.61 16 41 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 45 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.06 1.60 7.11 -2.39 -0.02 1.58 16 47 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -62.42 368.68 4.14 -58.28 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: -0.25 Total: 36.25 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 4.11 Total: -1.35 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -3.12 Total: -108.74 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.05 Total: -23.86 kcal Atomic # 9 Polarization: -9.06 SS G_CDS: 1.42 Total: -7.64 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -62.42 4.14 -58.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115631563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.130 kcal (2) G-P(sol) polarization free energy of solvation -62.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds