Wall clock time and date at job start Fri Apr 10 2020 23:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99932 * 2 1 4 4 H 1.48497 * 109.47283 * 269.99694 * 3 2 1 5 5 H 1.48502 * 109.47247 * 30.00152 * 3 2 1 6 6 H 1.48504 * 109.46831 * 149.99814 * 3 2 1 7 7 C 1.38812 * 119.99539 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99128 * 189.09825 * 7 2 1 9 9 N 1.36926 * 120.00332 * 9.10398 * 7 2 1 10 10 C 1.48144 * 127.83932 * 15.57436 * 9 7 2 11 11 C 1.54394 * 104.61963 * 140.39495 * 10 9 7 12 12 H 1.08998 * 118.18490 * 244.20643 * 11 10 9 13 13 C 1.53003 * 118.12162 * 87.19089 * 11 10 9 14 14 H 1.09001 * 117.40200 * 16.12438 * 13 11 10 15 15 C 1.52999 * 117.44361 * 160.81165 * 13 11 10 16 16 N 1.46498 * 109.47137 * 244.24212 * 15 13 11 17 17 C 1.34777 * 120.00103 * 179.97438 * 16 15 13 18 18 O 1.21285 * 119.99652 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00175 * 179.97438 * 17 16 15 20 20 H 1.08999 * 109.47463 * 59.98727 * 19 17 16 21 21 C 1.52952 * 109.47543 * 299.97705 * 19 17 16 22 22 C 1.52940 * 109.82181 * 177.02143 * 21 19 17 23 23 C 1.53176 * 109.45326 * 62.97798 * 22 21 19 24 24 C 1.53145 * 108.88463 * 303.43595 * 23 22 21 25 25 C 1.52811 * 117.74655 * 199.62041 * 24 23 22 26 26 C 1.52844 * 117.67982 * 268.50406 * 24 23 22 27 27 C 1.53145 * 115.00696 * 53.94227 * 24 23 22 28 28 C 1.53007 * 60.55610 * 268.46290 * 13 11 10 29 29 H 1.09002 * 119.53585 * 248.22839 * 28 13 11 30 30 C 1.48157 * 127.83913 * 195.55300 * 9 7 2 31 31 H 0.96999 * 119.99705 * 0.02562 * 1 2 3 32 32 H 1.08998 * 110.40869 * 21.61443 * 10 9 7 33 33 H 1.09000 * 110.41035 * 259.17827 * 10 9 7 34 34 H 1.09001 * 109.46772 * 124.23990 * 15 13 11 35 35 H 1.08998 * 109.46691 * 4.24411 * 15 13 11 36 36 H 0.97007 * 119.99936 * 359.97438 * 16 15 13 37 37 H 1.08999 * 109.41217 * 297.12847 * 21 19 17 38 38 H 1.08996 * 109.40874 * 56.91170 * 21 19 17 39 39 H 1.08999 * 109.47332 * 182.97840 * 22 21 19 40 40 H 1.09009 * 109.47254 * 302.98210 * 22 21 19 41 41 H 1.09002 * 109.56514 * 63.26111 * 23 22 21 42 42 H 1.08999 * 109.56653 * 183.61092 * 23 22 21 43 43 H 1.08995 * 117.50281 * 215.11235 * 25 24 23 44 44 H 1.09001 * 117.50158 * 0.15596 * 25 24 23 45 45 H 1.09003 * 117.50762 * 359.72692 * 26 24 23 46 46 H 1.09005 * 117.50717 * 144.75428 * 26 24 23 47 47 H 1.09003 * 109.56935 * 186.23162 * 27 24 23 48 48 H 1.09002 * 109.56977 * 65.86671 * 27 24 23 49 49 H 1.08999 * 110.40471 * 100.81669 * 30 9 7 50 50 H 1.09003 * 110.40262 * 338.38731 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0801 -1.2079 0.1485 9 7 1.3385 -2.3806 -0.1866 10 6 -0.0341 -2.5710 -0.7103 11 6 0.0640 -3.8170 -1.6167 12 1 -0.1229 -3.6937 -2.6835 13 6 -0.1181 -5.1931 -0.9732 14 1 -0.5683 -5.2273 0.0189 15 6 -0.4670 -6.3625 -1.8960 16 7 -1.7988 -6.8708 -1.5581 17 6 -2.3188 -7.9073 -2.2449 18 8 -1.6839 -8.4196 -3.1424 19 6 -3.6885 -8.4305 -1.8969 20 1 -4.4238 -7.6357 -2.0226 21 6 -3.6978 -8.9087 -0.4441 22 6 -5.1036 -9.3727 -0.0598 23 6 -5.4989 -10.5731 -0.9252 24 6 -5.3937 -10.1765 -2.4007 25 6 -6.1548 -11.0223 -3.4207 26 6 -6.6443 -9.6140 -3.0756 27 6 -4.0383 -9.6008 -2.8212 28 6 1.2864 -4.5973 -1.0900 29 1 2.0100 -5.0553 -1.7644 30 6 1.8197 -3.7546 0.0885 31 1 -0.4850 0.8401 -0.0004 32 1 -0.3433 -1.7020 -1.2911 33 1 -0.7317 -2.7502 0.1078 34 1 0.2682 -7.1572 -1.7692 35 1 -0.4597 -6.0227 -2.9316 36 1 -2.3064 -6.4612 -0.8400 37 1 -2.9991 -9.7376 -0.3310 38 1 -3.3955 -8.0898 0.2087 39 1 -5.1161 -9.6623 0.9910 40 1 -5.8114 -8.5595 -0.2211 41 1 -4.8264 -11.4067 -0.7223 42 1 -6.5241 -10.8652 -0.6978 43 1 -5.6932 -11.1696 -4.3971 44 1 -6.7360 -11.8637 -3.0434 45 1 -7.5475 -9.5290 -2.4713 46 1 -6.5047 -8.8344 -3.8246 47 1 -4.0951 -9.2483 -3.8511 48 1 -3.2726 -10.3722 -2.7392 49 1 1.4116 -4.1185 1.0314 50 1 2.9092 -3.7784 0.1104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978136774.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:52:06 Heat of formation + Delta-G solvation = 22.460956 kcal Electronic energy + Delta-G solvation = -26376.639734 eV Core-core repulsion = 22791.101177 eV Total energy + Delta-G solvation = -3585.538556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.50048 -39.13297 -38.50864 -35.10996 -34.95862 -33.30285 -31.51739 -30.77198 -28.05714 -27.27774 -27.07235 -25.09350 -23.49634 -22.84407 -21.92211 -21.14632 -20.52272 -19.57688 -19.25553 -18.95831 -17.12429 -16.80589 -16.20914 -15.62631 -15.41352 -15.20089 -14.74676 -14.58513 -14.22816 -14.00117 -13.75703 -13.53999 -13.23620 -13.00803 -12.84668 -12.67254 -12.63773 -12.20024 -11.84037 -11.80850 -11.48800 -11.42084 -11.26317 -11.23998 -11.11170 -10.85415 -10.81245 -10.69758 -10.30565 -10.24645 -10.13999 -9.92093 -9.76132 -9.73204 -9.41058 -9.09622 -8.93361 -8.65140 -6.88625 -5.81588 -3.15841 2.61104 3.10006 3.37110 3.42439 3.44167 3.46243 4.13036 4.27100 4.31681 4.44535 4.48031 4.55857 4.72456 4.78386 4.88053 4.89098 4.96619 5.07899 5.22649 5.26642 5.31594 5.35398 5.37188 5.42811 5.50430 5.51462 5.60406 5.62641 5.65764 5.76693 5.79747 5.82547 5.85662 5.88105 5.91573 5.93435 5.95573 6.06815 6.08068 6.22113 6.39326 6.54993 6.65322 6.71037 6.90829 7.33740 7.49822 7.51174 7.70084 8.19295 8.20438 9.09439 9.72117 10.49201 11.32739 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.027520 B = 0.002086 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.184464 B =13422.125388 C =13693.927388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.595 5.595 10 C 0.184 3.816 11 C -0.168 4.168 12 H 0.101 0.899 13 C -0.150 4.150 14 H 0.102 0.898 15 C 0.154 3.846 16 N -0.723 5.723 17 C 0.515 3.485 18 O -0.546 6.546 19 C -0.103 4.103 20 H 0.098 0.902 21 C -0.110 4.110 22 C -0.115 4.115 23 C -0.082 4.082 24 C -0.123 4.123 25 C -0.175 4.175 26 C -0.175 4.175 27 C -0.059 4.059 28 C -0.166 4.166 29 H 0.104 0.896 30 C 0.154 3.846 31 H 0.254 0.746 32 H 0.089 0.911 33 H 0.023 0.977 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.402 0.598 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.024 0.976 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.889 -21.198 -2.325 24.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.354 4.354 8 H 0.094 0.906 9 N -0.318 5.318 10 C 0.058 3.942 11 C -0.188 4.188 12 H 0.119 0.881 13 C -0.169 4.169 14 H 0.120 0.880 15 C 0.031 3.969 16 N -0.374 5.374 17 C 0.301 3.699 18 O -0.423 6.423 19 C -0.124 4.124 20 H 0.116 0.884 21 C -0.148 4.148 22 C -0.152 4.152 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.212 4.212 26 C -0.212 4.212 27 C -0.096 4.096 28 C -0.186 4.186 29 H 0.122 0.878 30 C 0.028 3.972 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.237 0.763 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.042 0.958 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.413 -21.248 -2.928 24.782 hybrid contribution 0.160 1.105 0.229 1.140 sum -12.253 -20.143 -2.699 23.731 Atomic orbital electron populations 1.69901 1.05059 1.25405 1.55888 1.24902 0.95667 0.97996 1.01802 0.86101 0.78691 0.83207 0.77657 1.21491 1.21651 1.20530 1.19008 0.90833 0.82372 1.43238 0.90553 1.45213 1.13337 0.99996 1.73270 1.21058 0.86818 0.92816 0.93509 1.24374 1.02303 0.92183 0.99924 0.88061 1.22526 1.00740 0.93704 0.99902 0.87981 1.20850 0.83107 0.94749 0.98198 1.46067 1.19314 1.34251 1.37782 1.20653 0.88046 0.79547 0.81665 1.90692 1.62172 1.58581 1.30879 1.21319 0.94373 0.99487 0.97231 0.88409 1.21496 0.98007 1.01565 0.93758 1.21506 0.96329 0.98185 0.99213 1.21161 1.01299 0.97866 0.91620 1.21511 0.93078 1.03829 0.93934 1.22981 1.03761 0.94465 1.00005 1.23044 0.97715 0.96944 1.03504 1.20911 0.94248 0.96231 0.98243 1.23846 0.89663 1.02290 1.02800 0.87820 1.21139 0.97193 0.85948 0.92910 0.93576 0.89275 0.95945 0.91389 0.91496 0.76331 0.91308 0.91255 0.91446 0.91517 0.91426 0.91806 0.88798 0.88907 0.88912 0.88823 0.91197 0.90662 0.95785 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.66 10.86 55.49 0.60 -26.06 16 2 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 3 Si 0.91 21.87 29.56 -169.99 -5.03 16.85 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.23 -6.29 10.35 -15.06 -0.16 -6.45 16 8 H 0.08 2.05 7.85 -52.48 -0.41 1.64 16 9 N -0.59 -15.17 3.38 -168.85 -0.57 -15.74 16 10 C 0.18 4.35 5.70 -2.41 -0.01 4.33 16 11 C -0.17 -3.13 6.74 -89.21 -0.60 -3.74 16 12 H 0.10 1.83 8.12 -51.93 -0.42 1.41 16 13 C -0.15 -2.26 5.39 -90.62 -0.49 -2.75 16 14 H 0.10 1.52 8.04 -51.93 -0.42 1.10 16 15 C 0.15 2.09 5.95 -4.04 -0.02 2.06 16 16 N -0.72 -8.41 5.43 -60.30 -0.33 -8.73 16 17 C 0.51 6.37 7.15 -10.99 -0.08 6.30 16 18 O -0.55 -8.85 15.96 5.55 0.09 -8.76 16 19 C -0.10 -0.93 2.53 -91.71 -0.23 -1.16 16 20 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 21 C -0.11 -0.83 5.03 -26.79 -0.13 -0.96 16 22 C -0.11 -0.73 5.93 -26.67 -0.16 -0.89 16 23 C -0.08 -0.54 5.67 -26.57 -0.15 -0.69 16 24 C -0.12 -0.93 1.97 -154.54 -0.30 -1.24 16 25 C -0.18 -1.23 9.99 -26.81 -0.27 -1.50 16 26 C -0.18 -1.23 9.93 -26.79 -0.27 -1.50 16 27 C -0.06 -0.55 4.27 -26.56 -0.11 -0.66 16 28 C -0.17 -2.91 6.85 -89.22 -0.61 -3.52 16 29 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 30 C 0.15 3.21 7.04 -2.41 -0.02 3.19 16 31 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.09 2.38 6.51 -51.93 -0.34 2.04 16 33 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.98 7.94 -51.93 -0.41 0.57 16 36 H 0.40 3.86 7.78 -40.82 -0.32 3.54 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.48 7.47 -51.93 -0.39 0.09 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 48 H 0.07 0.79 8.02 -51.93 -0.42 0.38 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 392.63 15.07 5.92 5.92 Total: -1.00 -31.42 392.63 -12.05 -43.47 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -9.02 Total: 2.51 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -3.71 Total: -9.45 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.30 Total: -50.53 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.42 -12.05 -43.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978136774.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.928 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds