Wall clock time and date at job start Fri Apr 10 2020 23:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 119.99969 * 2 1 4 4 H 1.48494 * 109.47723 * 240.00172 * 3 2 1 5 5 H 1.48507 * 109.47211 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46930 * 119.99834 * 3 2 1 7 7 C 1.38807 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00388 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00290 * 359.97438 * 7 2 1 10 10 C 1.48657 * 125.78014 * 0.02825 * 9 7 2 11 11 C 1.53061 * 103.44585 * 155.59702 * 10 9 7 12 12 H 1.08999 * 110.55936 * 284.34056 * 11 10 9 13 13 C 1.51614 * 116.68014 * 155.88732 * 11 10 9 14 14 C 1.53821 * 107.02625 * 183.74180 * 13 11 10 15 15 C 1.52532 * 111.69643 * 57.54005 * 14 13 11 16 16 H 1.09002 * 109.04316 * 66.51788 * 15 14 13 17 17 N 1.46504 * 109.03639 * 185.46632 * 15 14 13 18 18 C 1.34772 * 119.99957 * 274.99578 * 17 15 14 19 19 O 1.21284 * 120.00228 * 0.02562 * 18 17 15 20 20 C 1.50703 * 119.99972 * 180.02562 * 18 17 15 21 21 C 1.53003 * 115.54891 * 180.02562 * 20 18 17 22 22 C 1.52995 * 117.50161 * 34.20255 * 21 20 18 23 23 C 1.53004 * 117.49800 * 325.57699 * 21 20 18 24 24 C 1.52997 * 117.49725 * 34.32764 * 20 18 17 25 25 C 1.53000 * 117.49730 * 325.66902 * 20 18 17 26 26 C 1.53841 * 111.66027 * 305.95292 * 15 14 13 27 27 C 1.51440 * 107.04331 * 57.20139 * 26 15 14 28 28 H 1.09002 * 110.21193 * 54.38182 * 27 26 15 29 29 C 1.48239 * 125.78856 * 179.97438 * 9 7 2 30 30 H 0.97001 * 120.00320 * 0.02562 * 1 2 3 31 31 H 1.09004 * 110.62914 * 37.10859 * 10 9 7 32 32 H 1.08996 * 110.76215 * 274.15146 * 10 9 7 33 33 H 1.08996 * 109.94793 * 303.12180 * 13 11 10 34 34 H 1.08997 * 109.94540 * 64.36520 * 13 11 10 35 35 H 1.08999 * 109.03372 * 178.10616 * 14 13 11 36 36 H 1.08998 * 109.03322 * 296.96819 * 14 13 11 37 37 H 0.97001 * 120.00065 * 95.00432 * 17 15 14 38 38 H 1.08998 * 115.54746 * 179.91615 * 21 20 18 39 39 H 1.09004 * 117.49508 * 359.97438 * 22 21 20 40 40 H 1.08995 * 117.50194 * 145.02503 * 22 21 20 41 41 H 1.08993 * 117.49941 * 214.98409 * 23 21 20 42 42 H 1.08998 * 117.49848 * 359.97438 * 23 21 20 43 43 H 1.08996 * 117.50410 * 0.02562 * 24 20 18 44 44 H 1.09005 * 117.49734 * 145.02493 * 24 20 18 45 45 H 1.09003 * 117.49981 * 214.98280 * 25 20 18 46 46 H 1.09008 * 117.50090 * 359.97438 * 25 20 18 47 47 H 1.09003 * 109.93955 * 297.82181 * 26 15 14 48 48 H 1.08997 * 109.93717 * 176.58986 * 26 15 14 49 49 H 1.09007 * 110.16956 * 57.74244 * 29 9 7 50 50 H 1.08995 * 110.17409 * 295.94132 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1534 -2.5379 -0.0006 11 6 -0.3708 -3.9226 -0.6156 12 1 -0.2163 -3.8909 -1.6941 13 6 -1.6674 -4.6266 -0.2664 14 6 -1.6128 -6.0196 -0.9165 15 6 -0.3978 -6.8136 -0.4473 16 1 -0.5072 -7.0371 0.6139 17 7 -0.3306 -8.0711 -1.1959 18 6 -1.0357 -9.1416 -0.7797 19 8 -1.7262 -9.0639 0.2144 20 6 -0.9661 -10.4354 -1.5494 21 6 -1.8068 -11.5836 -0.9874 22 6 -3.1379 -11.2255 -0.3236 23 6 -1.9522 -11.6744 0.5330 24 6 0.3662 -10.7929 -2.2111 25 6 -0.8196 -10.3458 -3.0697 26 6 0.9094 -6.0319 -0.6636 27 6 0.7703 -4.7199 0.0799 28 1 0.5123 -4.9037 1.1229 29 6 1.9337 -3.7400 -0.0016 30 1 -0.4851 0.8400 -0.0004 31 1 -0.6175 -1.7672 -0.6161 32 1 -0.5453 -2.5034 1.0159 33 1 -1.7577 -4.7245 0.8154 34 1 -2.5137 -4.0648 -0.6617 35 1 -2.5180 -6.5686 -0.6572 36 1 -1.5660 -5.9049 -1.9994 37 1 0.2214 -8.1333 -1.9911 38 1 -1.7576 -12.5189 -1.5450 39 1 -3.4145 -10.1718 -0.2868 40 1 -3.9649 -11.9252 -0.4444 41 1 -1.9991 -12.6693 0.9756 42 1 -1.4486 -10.9163 1.1328 43 1 1.1926 -10.0927 -2.0894 44 1 0.6440 -11.8464 -2.2463 45 1 -1.3214 -11.1053 -3.6694 46 1 -0.7739 -9.3511 -3.5133 47 1 1.0579 -5.8427 -1.7267 48 1 1.7512 -6.5979 -0.2646 49 1 2.5866 -3.8592 0.8631 50 1 2.4953 -3.8989 -0.9221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979996078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:52:27 Heat of formation + Delta-G solvation = 37.056513 kcal Electronic energy + Delta-G solvation = -27509.920885 eV Core-core repulsion = 23925.015239 eV Total energy + Delta-G solvation = -3584.905646 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.83272 -39.29276 -37.36410 -36.15917 -35.22910 -33.29533 -31.81412 -30.55483 -28.74042 -26.32563 -25.31872 -24.64274 -23.04907 -22.49302 -22.18912 -21.99906 -20.48502 -20.05441 -19.74515 -19.12573 -17.04293 -16.71265 -16.43437 -15.54751 -15.07223 -14.96264 -14.88798 -14.35892 -14.19677 -13.90507 -13.78112 -13.44772 -13.27356 -12.58072 -12.47068 -12.27798 -12.09086 -12.03881 -11.87402 -11.68305 -11.60661 -11.33871 -11.31390 -11.13332 -10.92020 -10.83957 -10.64651 -10.47511 -10.32909 -10.06259 -9.93557 -9.87715 -9.68948 -9.65725 -9.54235 -9.23477 -8.95736 -8.62647 -6.80225 -5.61591 -3.02613 2.29137 2.99292 3.38356 3.42139 3.46201 3.47637 3.93183 4.09367 4.21033 4.50608 4.59110 4.63515 4.83409 4.91055 4.91233 5.02633 5.10893 5.19309 5.20459 5.34574 5.39355 5.45358 5.49749 5.53746 5.63264 5.64938 5.65405 5.68636 5.69744 5.77969 5.81304 6.06290 6.10762 6.16626 6.22492 6.27676 6.27955 6.29977 6.41246 6.50585 6.58299 6.65678 6.70298 6.88343 7.06299 7.40732 7.57831 7.64321 7.89270 8.13846 8.36708 9.23542 9.84821 10.51849 11.42742 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.033489 B = 0.002529 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.894292 B =11069.550011 C =11395.526574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.913 3.087 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.221 4.221 8 H 0.076 0.924 9 N -0.608 5.608 10 C 0.163 3.837 11 C -0.115 4.115 12 H 0.069 0.931 13 C -0.098 4.098 14 C -0.123 4.123 15 C 0.150 3.850 16 H 0.086 0.914 17 N -0.725 5.725 18 C 0.547 3.453 19 O -0.529 6.529 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.167 4.167 23 C -0.167 4.167 24 C -0.156 4.156 25 C -0.156 4.156 26 C -0.105 4.105 27 C -0.104 4.104 28 H 0.070 0.930 29 C 0.145 3.855 30 H 0.252 0.748 31 H 0.104 0.896 32 H 0.013 0.987 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.396 0.604 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.101 0.899 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.024 0.976 50 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.720 -23.581 -5.882 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.208 4.208 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.334 5.334 10 C 0.039 3.961 11 C -0.135 4.135 12 H 0.087 0.913 13 C -0.136 4.136 14 C -0.162 4.162 15 C 0.046 3.954 16 H 0.104 0.896 17 N -0.375 5.375 18 C 0.334 3.666 19 O -0.406 6.406 20 C -0.128 4.128 21 C -0.137 4.137 22 C -0.204 4.204 23 C -0.204 4.204 24 C -0.193 4.193 25 C -0.193 4.193 26 C -0.144 4.144 27 C -0.124 4.124 28 H 0.088 0.912 29 C 0.019 3.981 30 H 0.062 0.938 31 H 0.121 0.879 32 H 0.031 0.969 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.230 0.770 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.126 0.874 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.120 0.880 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.042 0.958 50 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -3.252 -23.273 -5.141 24.055 hybrid contribution 0.791 0.728 -0.367 1.136 sum -2.461 -22.546 -5.508 23.339 Atomic orbital electron populations 1.69804 1.04841 1.24791 1.57705 1.24769 0.95724 0.97610 1.02692 0.86169 0.78393 0.83190 0.77836 1.21239 1.21604 1.21288 1.19040 0.90424 0.82563 1.42900 0.90647 1.45118 1.01727 0.99503 1.87095 1.21633 0.84397 0.92086 0.98006 1.22393 0.93227 0.98125 0.99744 0.91297 1.21233 0.98177 0.93784 1.00426 1.21890 0.97403 0.96363 1.00510 1.21115 0.95399 0.81971 0.96877 0.89635 1.46170 1.48647 1.11800 1.30891 1.19430 0.79196 0.83614 0.84378 1.90655 1.40000 1.83872 1.26053 1.21001 1.01769 0.94793 0.95200 1.21371 0.99711 0.96561 0.96037 1.23044 0.90664 1.03241 1.03448 1.23037 1.02879 1.02180 0.92329 1.23114 0.90753 1.03318 1.02127 1.23116 1.01628 1.03741 0.90812 1.21530 0.95549 0.96217 1.01089 1.21713 0.98235 0.93215 0.99229 0.91161 1.20946 0.93475 0.85950 0.97686 0.93758 0.87859 0.96921 0.91859 0.91633 0.92100 0.92304 0.76951 0.87455 0.87313 0.89659 0.89667 0.87368 0.88003 0.87588 0.87581 0.88015 0.91378 0.91748 0.95839 0.96062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.08 10.11 55.49 0.56 -26.52 16 2 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.22 -6.21 10.30 -15.06 -0.16 -6.37 16 8 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 9 N -0.61 -15.68 3.45 -170.42 -0.59 -16.27 16 10 C 0.16 3.94 5.53 -2.82 -0.02 3.93 16 11 C -0.12 -2.13 2.48 -89.90 -0.22 -2.35 16 12 H 0.07 1.30 8.03 -51.93 -0.42 0.88 16 13 C -0.10 -1.53 5.71 -27.01 -0.15 -1.68 16 14 C -0.12 -1.66 5.38 -26.54 -0.14 -1.80 16 15 C 0.15 1.90 2.45 -67.73 -0.17 1.74 16 16 H 0.09 1.25 7.52 -51.93 -0.39 0.86 16 17 N -0.72 -7.58 4.83 -53.61 -0.26 -7.83 16 18 C 0.55 6.41 7.19 -10.99 -0.08 6.34 16 19 O -0.53 -7.87 11.46 5.55 0.06 -7.81 16 20 C -0.12 -1.11 2.46 -155.66 -0.38 -1.50 16 21 C -0.12 -1.08 5.85 -90.62 -0.53 -1.61 16 22 C -0.17 -1.74 9.66 -26.73 -0.26 -2.00 16 23 C -0.17 -1.74 9.66 -26.73 -0.26 -2.00 16 24 C -0.16 -1.00 9.60 -26.70 -0.26 -1.26 16 25 C -0.16 -1.01 9.60 -26.69 -0.26 -1.27 16 26 C -0.11 -1.38 5.16 -27.08 -0.14 -1.52 16 27 C -0.10 -1.78 2.30 -90.36 -0.21 -1.99 16 28 H 0.07 1.24 7.94 -51.93 -0.41 0.83 16 29 C 0.14 3.01 6.98 -3.43 -0.02 2.98 16 30 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.10 2.82 5.93 -51.93 -0.31 2.52 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 1.01 7.99 -51.93 -0.41 0.60 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.40 3.21 6.80 -40.82 -0.28 2.93 16 38 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.11 1.39 6.27 -51.93 -0.33 1.06 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.11 1.37 6.29 -51.93 -0.33 1.05 16 43 H 0.10 0.60 7.55 -51.93 -0.39 0.21 16 44 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.10 0.62 7.55 -51.92 -0.39 0.22 16 47 H 0.07 0.85 8.04 -51.93 -0.42 0.44 16 48 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.02 0.43 8.08 -51.93 -0.42 0.01 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -31.29 380.19 -11.55 -42.84 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -8.69 Total: 3.47 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -3.35 Total: -10.81 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.29 Total: -50.62 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.06 Total: -7.81 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.29 -11.55 -42.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979996078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.895 kcal (2) G-P(sol) polarization free energy of solvation -31.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds