Wall clock time and date at job start Fri Apr 10 2020 23:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 119.99969 * 2 1 4 4 H 1.48494 * 109.47723 * 240.00172 * 3 2 1 5 5 H 1.48507 * 109.47211 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46930 * 119.99834 * 3 2 1 7 7 C 1.38807 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00388 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00290 * 359.97438 * 7 2 1 10 10 C 1.48657 * 125.78014 * 0.02825 * 9 7 2 11 11 C 1.53061 * 103.44585 * 155.59702 * 10 9 7 12 12 H 1.08999 * 110.55936 * 284.34056 * 11 10 9 13 13 C 1.51614 * 116.68014 * 155.88732 * 11 10 9 14 14 C 1.53821 * 107.02625 * 183.74180 * 13 11 10 15 15 C 1.52532 * 111.69643 * 57.54005 * 14 13 11 16 16 H 1.09002 * 109.04316 * 66.51788 * 15 14 13 17 17 N 1.46504 * 109.03639 * 185.46632 * 15 14 13 18 18 C 1.34772 * 119.99957 * 274.99578 * 17 15 14 19 19 O 1.21284 * 120.00228 * 0.02562 * 18 17 15 20 20 C 1.50703 * 119.99972 * 180.02562 * 18 17 15 21 21 C 1.53003 * 115.54891 * 180.02562 * 20 18 17 22 22 C 1.52995 * 117.50161 * 34.20255 * 21 20 18 23 23 C 1.53004 * 117.49800 * 325.57699 * 21 20 18 24 24 C 1.52997 * 117.49725 * 34.32764 * 20 18 17 25 25 C 1.53000 * 117.49730 * 325.66902 * 20 18 17 26 26 C 1.53841 * 111.66027 * 305.95292 * 15 14 13 27 27 C 1.51440 * 107.04331 * 57.20139 * 26 15 14 28 28 H 1.09002 * 110.21193 * 54.38182 * 27 26 15 29 29 C 1.48239 * 125.78856 * 179.97438 * 9 7 2 30 30 H 0.97001 * 120.00320 * 0.02562 * 1 2 3 31 31 H 1.09004 * 110.62914 * 37.10859 * 10 9 7 32 32 H 1.08996 * 110.76215 * 274.15146 * 10 9 7 33 33 H 1.08996 * 109.94793 * 303.12180 * 13 11 10 34 34 H 1.08997 * 109.94540 * 64.36520 * 13 11 10 35 35 H 1.08999 * 109.03372 * 178.10616 * 14 13 11 36 36 H 1.08998 * 109.03322 * 296.96819 * 14 13 11 37 37 H 0.97001 * 120.00065 * 95.00432 * 17 15 14 38 38 H 1.08998 * 115.54746 * 179.91615 * 21 20 18 39 39 H 1.09004 * 117.49508 * 359.97438 * 22 21 20 40 40 H 1.08995 * 117.50194 * 145.02503 * 22 21 20 41 41 H 1.08993 * 117.49941 * 214.98409 * 23 21 20 42 42 H 1.08998 * 117.49848 * 359.97438 * 23 21 20 43 43 H 1.08996 * 117.50410 * 0.02562 * 24 20 18 44 44 H 1.09005 * 117.49734 * 145.02493 * 24 20 18 45 45 H 1.09003 * 117.49981 * 214.98280 * 25 20 18 46 46 H 1.09008 * 117.50090 * 359.97438 * 25 20 18 47 47 H 1.09003 * 109.93955 * 297.82181 * 26 15 14 48 48 H 1.08997 * 109.93717 * 176.58986 * 26 15 14 49 49 H 1.09007 * 110.16956 * 57.74244 * 29 9 7 50 50 H 1.08995 * 110.17409 * 295.94132 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1534 -2.5379 -0.0006 11 6 -0.3708 -3.9226 -0.6156 12 1 -0.2163 -3.8909 -1.6941 13 6 -1.6674 -4.6266 -0.2664 14 6 -1.6128 -6.0196 -0.9165 15 6 -0.3978 -6.8136 -0.4473 16 1 -0.5072 -7.0371 0.6139 17 7 -0.3306 -8.0711 -1.1959 18 6 -1.0357 -9.1416 -0.7797 19 8 -1.7262 -9.0639 0.2144 20 6 -0.9661 -10.4354 -1.5494 21 6 -1.8068 -11.5836 -0.9874 22 6 -3.1379 -11.2255 -0.3236 23 6 -1.9522 -11.6744 0.5330 24 6 0.3662 -10.7929 -2.2111 25 6 -0.8196 -10.3458 -3.0697 26 6 0.9094 -6.0319 -0.6636 27 6 0.7703 -4.7199 0.0799 28 1 0.5123 -4.9037 1.1229 29 6 1.9337 -3.7400 -0.0016 30 1 -0.4851 0.8400 -0.0004 31 1 -0.6175 -1.7672 -0.6161 32 1 -0.5453 -2.5034 1.0159 33 1 -1.7577 -4.7245 0.8154 34 1 -2.5137 -4.0648 -0.6617 35 1 -2.5180 -6.5686 -0.6572 36 1 -1.5660 -5.9049 -1.9994 37 1 0.2214 -8.1333 -1.9911 38 1 -1.7576 -12.5189 -1.5450 39 1 -3.4145 -10.1718 -0.2868 40 1 -3.9649 -11.9252 -0.4444 41 1 -1.9991 -12.6693 0.9756 42 1 -1.4486 -10.9163 1.1328 43 1 1.1926 -10.0927 -2.0894 44 1 0.6440 -11.8464 -2.2463 45 1 -1.3214 -11.1053 -3.6694 46 1 -0.7739 -9.3511 -3.5133 47 1 1.0579 -5.8427 -1.7267 48 1 1.7512 -6.5979 -0.2646 49 1 2.5866 -3.8592 0.8631 50 1 2.4953 -3.8989 -0.9221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979996078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:52:26 Heat of formation + Delta-G solvation = 19.950053 kcal Electronic energy + Delta-G solvation = -27510.662676 eV Core-core repulsion = 23925.015239 eV Total energy + Delta-G solvation = -3585.647437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.72035 -40.60458 -38.28639 -37.16142 -36.35222 -34.72676 -33.45807 -31.97400 -30.38016 -27.85690 -26.91503 -25.59676 -23.69614 -23.59195 -23.27028 -22.87530 -21.65891 -21.43776 -21.19363 -20.26525 -18.78519 -17.76540 -17.31493 -16.88075 -16.37945 -16.04588 -15.88822 -15.70718 -15.60579 -15.26113 -14.87126 -14.70068 -14.14432 -14.11617 -13.63462 -13.52979 -13.47305 -13.26663 -13.10568 -12.94241 -12.73876 -12.65145 -12.55157 -12.32202 -12.19017 -12.09184 -11.96722 -11.75262 -11.72158 -11.69863 -11.48306 -11.20972 -11.02659 -10.82581 -10.71524 -10.45440 -10.34700 -9.99341 -8.88104 -7.75901 -5.20007 1.45872 1.49415 1.51332 1.55737 2.11763 2.50151 2.70393 3.30562 3.33646 3.48457 3.55688 3.56064 3.65137 3.68004 3.88113 4.01768 4.04612 4.10853 4.24983 4.34422 4.39433 4.39748 4.44063 4.45890 4.55092 4.67559 4.70730 4.76973 4.77312 4.88470 4.88804 4.94889 5.00080 5.03107 5.05443 5.06510 5.13459 5.19456 5.21801 5.24576 5.36584 5.39136 5.44802 5.46169 5.54629 5.57628 5.73834 5.83801 6.29440 6.59704 7.09597 7.30677 7.76966 8.43966 9.26300 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.033489 B = 0.002529 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.894292 B =11069.550011 C =11395.526574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.071 4.071 3 Si 0.981 3.019 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.280 1.280 7 C -0.238 4.238 8 H 0.081 0.919 9 N -0.632 5.632 10 C 0.166 3.834 11 C -0.101 4.101 12 H 0.072 0.928 13 C -0.093 4.093 14 C -0.111 4.111 15 C 0.159 3.841 16 H 0.064 0.936 17 N -0.713 5.713 18 C 0.541 3.459 19 O -0.568 6.568 20 C -0.152 4.152 21 C -0.102 4.102 22 C -0.179 4.179 23 C -0.178 4.178 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.092 4.092 27 C -0.090 4.090 28 H 0.061 0.939 29 C 0.140 3.860 30 H 0.246 0.754 31 H 0.068 0.932 32 H -0.018 1.018 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.412 0.588 38 H 0.134 0.866 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.110 0.890 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.108 0.892 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.023 0.977 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.272 -26.042 -8.048 27.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.263 4.263 3 Si 0.809 3.191 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.206 1.206 7 C -0.367 4.367 8 H 0.098 0.902 9 N -0.359 5.359 10 C 0.042 3.958 11 C -0.120 4.120 12 H 0.090 0.910 13 C -0.131 4.131 14 C -0.150 4.150 15 C 0.055 3.945 16 H 0.083 0.917 17 N -0.364 5.364 18 C 0.329 3.671 19 O -0.447 6.447 20 C -0.155 4.155 21 C -0.120 4.120 22 C -0.216 4.216 23 C -0.215 4.215 24 C -0.177 4.177 25 C -0.178 4.178 26 C -0.130 4.130 27 C -0.110 4.110 28 H 0.079 0.921 29 C 0.016 3.984 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.000 1.000 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.249 0.751 38 H 0.151 0.849 39 H 0.098 0.902 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.128 0.872 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.126 0.874 47 H 0.103 0.897 48 H 0.102 0.898 49 H 0.041 0.959 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.767 -25.772 -7.335 26.853 hybrid contribution 0.346 1.506 0.359 1.586 sum -1.421 -24.266 -6.976 25.288 Atomic orbital electron populations 1.70076 1.06235 1.24991 1.58721 1.25644 0.96650 1.00999 1.02985 0.85120 0.77087 0.78735 0.78190 1.20059 1.22038 1.20622 1.19447 0.91007 0.83896 1.42366 0.90153 1.45474 1.02531 1.00871 1.87029 1.21388 0.83848 0.94637 0.95944 1.22158 0.95448 0.95024 0.99392 0.90967 1.21173 0.96697 0.95070 1.00185 1.21761 0.97701 0.94522 1.01025 1.20805 0.94791 0.82837 0.96115 0.91729 1.45948 1.48721 1.10651 1.31093 1.20002 0.78383 0.84619 0.84053 1.90654 1.41608 1.84582 1.27895 1.20977 1.04465 0.93310 0.96760 1.21539 0.97981 0.97503 0.94960 1.22970 0.91851 1.01922 1.04815 1.22964 1.03049 1.02053 0.93446 1.23267 0.89898 1.04536 0.99992 1.23262 1.01069 1.04673 0.88798 1.21421 0.96314 0.93771 1.01486 1.21597 0.95712 0.94393 0.99288 0.92079 1.21134 0.94697 0.84540 0.98071 0.94451 0.91358 1.00044 0.92748 0.91601 0.92650 0.90827 0.75129 0.84865 0.90197 0.88132 0.88105 0.90222 0.87219 0.86036 0.86072 0.87354 0.89680 0.89778 0.95892 0.94729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.87 10.11 21.65 0.22 -57.66 16 2 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 3 Si 0.98 46.33 29.55 68.60 2.03 48.36 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.24 -13.61 10.30 84.03 0.87 -12.75 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 9 N -0.63 -33.29 3.45 -693.08 -2.39 -35.68 16 10 C 0.17 8.40 5.53 85.98 0.48 8.87 16 11 C -0.10 -3.73 2.48 -10.33 -0.03 -3.75 16 12 H 0.07 2.65 8.03 -2.39 -0.02 2.63 16 13 C -0.09 -2.91 5.71 30.42 0.17 -2.74 16 14 C -0.11 -2.86 5.38 30.72 0.17 -2.70 16 15 C 0.16 3.78 2.45 45.12 0.11 3.89 16 16 H 0.06 1.86 7.52 -2.39 -0.02 1.84 16 17 N -0.71 -13.18 4.83 -441.91 -2.14 -15.32 16 18 C 0.54 11.96 7.19 87.66 0.63 12.59 16 19 O -0.57 -17.16 11.46 -3.04 -0.03 -17.19 16 20 C -0.15 -2.33 2.46 -52.93 -0.13 -2.46 16 21 C -0.10 -1.64 5.85 -10.79 -0.06 -1.70 16 22 C -0.18 -3.64 9.66 30.59 0.30 -3.34 16 23 C -0.18 -3.61 9.66 30.60 0.30 -3.32 16 24 C -0.14 -1.23 9.60 30.62 0.29 -0.93 16 25 C -0.14 -1.26 9.60 30.62 0.29 -0.97 16 26 C -0.09 -2.15 5.16 30.37 0.16 -1.99 16 27 C -0.09 -3.01 2.30 -10.62 -0.02 -3.03 16 28 H 0.06 2.15 7.94 -2.39 -0.02 2.14 16 29 C 0.14 5.73 6.98 85.82 0.60 6.33 16 30 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.07 3.93 5.93 -2.39 -0.01 3.92 16 32 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 33 H 0.05 1.80 7.99 -2.39 -0.02 1.78 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.41 5.11 6.80 -92.71 -0.63 4.48 16 38 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 2.11 6.27 -2.38 -0.01 2.10 16 40 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.08 2.09 6.29 -2.39 -0.02 2.08 16 43 H 0.11 0.81 7.55 -2.39 -0.02 0.79 16 44 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 45 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.11 0.85 7.55 -2.38 -0.02 0.83 16 47 H 0.08 1.78 8.04 -2.39 -0.02 1.76 16 48 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 50 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 Total: -1.00 -71.92 380.19 2.55 -69.37 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.29 Total: 19.72 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 4.58 Total: -11.60 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -4.31 Total: -108.65 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.03 Total: -17.19 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -71.92 2.55 -69.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979996078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.319 kcal (2) G-P(sol) polarization free energy of solvation -71.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds