Wall clock time and date at job start Fri Apr 10 2020 23:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99877 * 2 1 4 4 H 1.48494 * 109.47114 * 274.42084 * 3 2 1 5 5 H 1.48496 * 109.47274 * 34.42614 * 3 2 1 6 6 H 1.48509 * 109.46923 * 154.42066 * 3 2 1 7 7 C 1.38810 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00009 * 195.30095 * 7 2 1 9 9 N 1.36932 * 120.00269 * 15.30540 * 7 2 1 10 10 C 1.47373 * 125.57762 * 31.50685 * 9 7 2 11 11 C 1.56223 * 104.46528 * 154.62531 * 10 9 7 12 12 C 1.54917 * 101.15224 * 38.11678 * 11 10 9 13 13 N 1.46502 * 112.33406 * 85.13154 * 12 11 10 14 14 C 1.34771 * 119.99762 * 64.36180 * 13 12 11 15 15 O 1.21614 * 120.00488 * 359.97438 * 14 13 12 16 16 C 1.47102 * 119.99651 * 180.02562 * 14 13 12 17 17 C 1.33002 * 119.99799 * 186.20414 * 16 14 13 18 18 C 1.51271 * 120.84865 * 191.15489 * 17 16 14 19 19 C 1.53232 * 108.53306 * 231.32653 * 18 17 16 20 20 C 1.52958 * 109.40315 * 305.36926 * 19 18 17 21 21 C 1.52959 * 109.76047 * 63.63633 * 20 19 18 22 22 C 1.51266 * 120.84981 * 11.12794 * 17 16 14 23 23 C 1.53584 * 109.57447 * 210.61316 * 12 11 10 24 24 C 1.54172 * 106.70005 * 112.44664 * 23 12 11 25 25 C 1.54753 * 104.36549 * 335.87060 * 24 23 12 26 26 C 1.46974 * 125.58226 * 211.46810 * 9 7 2 27 27 H 1.08992 * 111.81779 * 59.09386 * 26 9 7 28 28 H 0.97005 * 119.99598 * 0.02562 * 1 2 3 29 29 H 1.08999 * 110.36999 * 274.11027 * 10 9 7 30 30 H 1.09000 * 110.36562 * 36.44328 * 10 9 7 31 31 H 1.09005 * 112.19606 * 279.80071 * 11 10 9 32 32 H 1.08997 * 110.32284 * 155.62900 * 11 10 9 33 33 H 0.96998 * 119.99892 * 244.36082 * 13 12 11 34 34 H 1.07996 * 120.00340 * 6.20224 * 16 14 13 35 35 H 1.08997 * 109.62819 * 111.61046 * 18 17 16 36 36 H 1.09002 * 109.62428 * 351.03925 * 18 17 16 37 37 H 1.09002 * 109.47902 * 185.39167 * 19 18 17 38 38 H 1.08994 * 109.48421 * 65.35450 * 19 18 17 39 39 H 1.09000 * 109.41559 * 183.70836 * 20 19 18 40 40 H 1.09000 * 109.41450 * 303.56572 * 20 19 18 41 41 H 1.09000 * 109.48058 * 56.34608 * 21 20 19 42 42 H 1.08994 * 109.48141 * 176.38585 * 21 20 19 43 43 H 1.08994 * 109.62718 * 248.38938 * 22 17 16 44 44 H 1.08997 * 109.62605 * 8.96266 * 22 17 16 45 45 H 1.08999 * 110.01556 * 232.59707 * 23 12 11 46 46 H 1.09005 * 110.01705 * 353.98676 * 23 12 11 47 47 H 1.09006 * 110.80405 * 216.92380 * 24 23 12 48 48 H 1.09005 * 110.09322 * 94.46104 * 24 23 12 49 49 H 1.09006 * 110.66698 * 278.89341 * 25 24 23 50 50 H 1.09000 * 110.66749 * 155.75971 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4042 2.1004 -1.3958 5 1 1.4976 2.6239 0.7915 6 1 3.5914 1.4150 0.6045 7 6 2.0102 -1.2022 0.0005 8 1 3.0615 -1.2187 0.2474 9 7 1.3620 -2.3671 -0.3120 10 6 0.2300 -2.4943 -1.2470 11 6 0.3002 -3.9730 -1.7461 12 6 0.7210 -4.7074 -0.4486 13 7 -0.4263 -5.0425 0.3985 14 6 -1.3588 -5.9100 -0.0422 15 8 -1.2482 -6.4143 -1.1432 16 6 -2.5111 -6.2459 0.8083 17 6 -3.3648 -7.1922 0.4280 18 6 -4.6813 -7.3841 1.1479 19 6 -4.8167 -8.8619 1.5298 20 6 -4.6502 -9.7271 0.2795 21 6 -3.2387 -9.5551 -0.2842 22 6 -3.0444 -8.1037 -0.7360 23 6 1.5604 -5.9430 -0.8059 24 6 2.9912 -5.6673 -0.3024 25 6 3.0894 -4.1238 -0.2509 26 6 1.6818 -3.6955 0.2296 27 1 1.5985 -3.7209 1.3160 28 1 -0.4850 0.8401 -0.0004 29 1 -0.7108 -2.2982 -0.7326 30 1 0.3535 -1.8112 -2.0873 31 1 1.0455 -4.1080 -2.5300 32 1 -0.6817 -4.3062 -2.0819 33 1 -0.5148 -4.6399 1.2766 34 1 -2.6639 -5.7242 1.7415 35 1 -5.5029 -7.0989 0.4908 36 1 -4.6990 -6.7701 2.0484 37 1 -5.8012 -9.0363 1.9641 38 1 -4.0473 -9.1215 2.2568 39 1 -4.8117 -10.7734 0.5388 40 1 -5.3796 -9.4232 -0.4713 41 1 -2.5073 -9.7980 0.4867 42 1 -3.1038 -10.2212 -1.1363 43 1 -3.7144 -7.8851 -1.5674 44 1 -2.0105 -7.9521 -1.0458 45 1 1.1457 -6.8280 -0.3233 46 1 1.5793 -6.0813 -1.8870 47 1 3.7299 -6.0739 -0.9933 48 1 3.1264 -6.0918 0.6925 49 1 3.2979 -3.7183 -1.2410 50 1 3.8513 -3.8103 0.4628 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989999516.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:53:39 Heat of formation + Delta-G solvation = -13.168248 kcal Electronic energy + Delta-G solvation = -27988.292757 eV Core-core repulsion = 24401.209202 eV Total energy + Delta-G solvation = -3587.083555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.23980 -38.85682 -37.48325 -34.14941 -33.35878 -32.68221 -31.52159 -31.06216 -29.68959 -27.18719 -26.71813 -25.60971 -23.79930 -23.03083 -22.10067 -20.85178 -20.08795 -19.74699 -18.82819 -18.23412 -16.87155 -16.52287 -15.86086 -15.22699 -14.96583 -14.75946 -14.47280 -14.40946 -14.13059 -13.64373 -13.54902 -13.29936 -13.15929 -12.83058 -12.67050 -12.43259 -12.17596 -11.96032 -11.81857 -11.62488 -11.25352 -11.19867 -11.04643 -10.98549 -10.80207 -10.75991 -10.60435 -10.50862 -10.40658 -10.20778 -10.03250 -9.84580 -9.78922 -9.72195 -9.11371 -8.80349 -8.53847 -8.39863 -6.60520 -5.78442 -3.26611 1.49306 3.36868 3.43669 3.44823 3.55880 3.61980 4.46727 4.58511 4.61282 4.75581 4.88350 4.96466 5.06605 5.17479 5.23297 5.29247 5.34219 5.42346 5.45793 5.47506 5.51290 5.69620 5.72193 5.80283 5.82250 5.86817 5.89232 5.93418 5.96755 6.00706 6.13665 6.17478 6.18346 6.25216 6.34120 6.35433 6.43507 6.53436 6.57234 6.59761 6.75908 6.79025 6.82283 7.01168 7.21498 7.29674 7.60773 7.79751 7.99562 8.33122 8.66847 9.13056 9.76467 10.54695 11.29730 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.019736 B = 0.003260 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.372450 B = 8585.947796 C = 9485.247489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.008 3.992 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.241 4.241 8 H 0.067 0.933 9 N -0.585 5.585 10 C 0.164 3.836 11 C -0.139 4.139 12 C 0.163 3.837 13 N -0.699 5.699 14 C 0.548 3.452 15 O -0.540 6.540 16 C -0.225 4.225 17 C -0.029 4.029 18 C -0.093 4.093 19 C -0.116 4.116 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.109 4.109 24 C -0.124 4.124 25 C -0.129 4.129 26 C 0.159 3.841 27 H 0.046 0.954 28 H 0.253 0.747 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.401 0.599 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.128 0.872 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.058 0.942 48 H 0.057 0.943 49 H 0.071 0.929 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 -17.705 2.326 19.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.192 4.192 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.370 4.370 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.039 3.961 11 C -0.178 4.178 12 C 0.076 3.924 13 N -0.347 5.347 14 C 0.338 3.662 15 O -0.421 6.421 16 C -0.246 4.246 17 C -0.031 4.031 18 C -0.130 4.130 19 C -0.154 4.154 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.160 4.160 23 C -0.148 4.148 24 C -0.162 4.162 25 C -0.169 4.169 26 C 0.051 3.949 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.235 0.765 34 H 0.141 0.859 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.145 0.855 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.089 0.911 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.481 -17.795 1.588 19.004 hybrid contribution 0.176 1.308 0.610 1.454 sum -6.305 -16.486 2.197 17.787 Atomic orbital electron populations 1.70007 1.05344 1.25508 1.53187 1.25202 0.95298 0.98441 1.00216 0.86258 0.79157 0.83615 0.77614 1.21445 1.21769 1.20281 1.18821 0.91578 0.83217 1.43368 0.91545 1.44303 1.37964 1.01584 1.47004 1.21658 0.91933 0.90469 0.92021 1.23433 1.01016 0.98043 0.95314 1.21580 0.85156 0.93868 0.91778 1.45855 1.23615 1.45044 1.20213 1.18450 0.82138 0.79002 0.86608 1.90544 1.77522 1.52452 1.21613 1.22398 0.97640 1.02971 1.01583 1.22622 0.93166 0.92382 0.94908 1.20954 0.94807 0.97199 1.00055 1.21563 1.01717 0.94174 0.97915 1.21568 0.97715 0.99314 0.97472 1.21596 0.96444 0.96768 1.00553 1.21670 1.07234 0.91913 0.95209 1.22225 0.94450 0.96865 1.01264 1.22345 0.96277 0.97330 1.00282 1.22874 0.98769 0.93424 1.01844 1.21843 0.91284 0.86318 0.95428 0.93613 0.93699 0.94106 0.94412 0.91341 0.91465 0.76463 0.85872 0.89965 0.90869 0.91764 0.91799 0.92205 0.91939 0.92194 0.91799 0.90955 0.85466 0.92154 0.91432 0.92298 0.92442 0.91060 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.07 11.97 55.49 0.66 -25.41 16 2 C 0.01 0.24 5.30 -17.43 -0.09 0.14 16 3 Si 0.90 21.68 29.58 -169.99 -5.03 16.65 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.24 -6.54 9.82 -15.06 -0.15 -6.69 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.58 -14.41 2.98 -160.27 -0.48 -14.89 16 10 C 0.16 3.95 5.74 -1.84 -0.01 3.94 16 11 C -0.14 -2.79 5.85 -23.99 -0.14 -2.93 16 12 C 0.16 2.94 0.71 -129.37 -0.09 2.85 16 13 N -0.70 -11.56 5.23 -46.51 -0.24 -11.80 16 14 C 0.55 8.79 6.79 -12.67 -0.09 8.70 16 15 O -0.54 -9.66 11.02 5.27 0.06 -9.60 16 16 C -0.23 -2.96 9.66 -37.80 -0.37 -3.32 16 17 C -0.03 -0.34 5.39 -100.61 -0.54 -0.88 16 18 C -0.09 -0.85 6.04 -27.48 -0.17 -1.02 16 19 C -0.12 -0.93 5.94 -26.63 -0.16 -1.08 16 20 C -0.12 -1.01 5.81 -26.77 -0.16 -1.16 16 21 C -0.12 -1.13 5.93 -26.63 -0.16 -1.29 16 22 C -0.12 -1.51 5.33 -27.48 -0.15 -1.65 16 23 C -0.11 -1.77 5.24 -25.82 -0.14 -1.90 16 24 C -0.12 -1.86 6.82 -25.20 -0.17 -2.03 16 25 C -0.13 -2.32 6.26 -24.87 -0.16 -2.48 16 26 C 0.16 3.23 3.60 -65.60 -0.24 2.99 16 27 H 0.05 0.96 7.99 -51.93 -0.42 0.54 16 28 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.04 1.09 7.70 -51.93 -0.40 0.69 16 30 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.34 7.65 -51.93 -0.40 0.94 16 32 H 0.07 1.37 6.82 -51.93 -0.35 1.02 16 33 H 0.40 6.22 8.49 -40.82 -0.35 5.87 16 34 H 0.12 1.39 7.96 -52.49 -0.42 0.98 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.62 7.92 -51.93 -0.41 0.20 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.13 1.88 4.68 -53.49 -0.25 1.63 16 45 H 0.06 0.97 7.40 -51.93 -0.38 0.58 16 46 H 0.07 1.12 7.41 -51.93 -0.38 0.73 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 49 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 50 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 378.37 15.07 5.70 5.70 Total: -1.00 -29.82 378.37 -11.09 -40.91 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -8.80 Total: 6.24 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -2.96 Total: -7.80 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.06 Total: -52.10 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.06 Total: -9.60 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.82 -11.09 -40.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989999516.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.741 kcal (2) G-P(sol) polarization free energy of solvation -29.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds