Wall clock time and date at job start Fri Apr 10 2020 23:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47076 * 121.68155 * 3 2 1 5 5 C 1.50699 * 109.47115 * 304.97782 * 4 3 2 6 6 O 1.21285 * 120.00220 * 126.58679 * 5 4 3 7 7 N 1.34779 * 120.00063 * 306.58643 * 5 4 3 8 8 C 1.46927 * 120.63235 * 355.21097 * 7 5 4 9 9 C 1.53190 * 108.77623 * 233.61057 * 8 7 5 10 10 C 1.53040 * 109.31266 * 305.36119 * 9 8 7 11 11 C 1.53048 * 109.53727 * 61.36577 * 10 9 8 12 12 H 1.09007 * 109.49445 * 58.61804 * 11 10 9 13 13 N 1.46499 * 109.49772 * 178.68121 * 11 10 9 14 14 C 1.36934 * 119.99988 * 274.93540 * 13 11 10 15 15 H 1.08003 * 120.00214 * 359.72729 * 14 13 11 16 16 C 1.38808 * 119.99851 * 179.97438 * 14 13 11 17 17 N 1.31619 * 120.00118 * 359.72970 * 16 14 13 18 18 Si 1.86803 * 120.00032 * 179.72519 * 16 14 13 19 19 H 1.48500 * 109.46962 * 90.00093 * 18 16 14 20 20 H 1.48497 * 109.47050 * 210.00333 * 18 16 14 21 21 H 1.48499 * 109.46988 * 330.00580 * 18 16 14 22 22 C 1.46931 * 120.60642 * 175.23102 * 7 5 4 23 23 C 1.52997 * 109.47130 * 64.97740 * 4 3 2 24 24 C 1.53001 * 109.47130 * 179.97438 * 23 4 3 25 25 C 1.53004 * 109.46895 * 300.00158 * 24 23 4 26 26 C 1.52997 * 109.47361 * 59.99983 * 25 24 23 27 27 C 1.52999 * 109.47316 * 300.00210 * 26 25 24 28 28 H 4.44648 * 5.63331 * 180.02562 * 4 1 2 29 29 H 1.09003 * 109.46998 * 1.68453 * 3 2 1 30 30 H 1.09000 * 109.47046 * 241.68227 * 3 2 1 31 31 H 1.09001 * 109.58393 * 113.81720 * 8 7 5 32 32 H 1.08999 * 109.70024 * 353.47080 * 8 7 5 33 33 H 1.09006 * 109.49364 * 185.41348 * 9 8 7 34 34 H 1.08990 * 109.52488 * 65.33301 * 9 8 7 35 35 H 1.08997 * 109.46423 * 301.34660 * 10 9 8 36 36 H 1.09001 * 109.44843 * 181.37734 * 10 9 8 37 37 H 0.96996 * 119.99482 * 94.93386 * 13 11 10 38 38 H 0.97003 * 120.00228 * 179.97438 * 17 16 14 39 39 H 1.09009 * 109.61391 * 6.62407 * 22 7 5 40 40 H 1.08997 * 109.56780 * 246.19581 * 22 7 5 41 41 H 1.09003 * 109.47033 * 299.99862 * 23 4 3 42 42 H 1.09004 * 109.46793 * 59.99786 * 23 4 3 43 43 H 1.08996 * 109.47070 * 179.97438 * 24 23 4 44 44 H 1.09003 * 109.47108 * 59.99781 * 24 23 4 45 45 H 1.09003 * 109.46935 * 299.99729 * 25 24 23 46 46 H 1.09005 * 109.46901 * 179.97438 * 25 24 23 47 47 H 1.08999 * 109.47336 * 179.97438 * 26 25 24 48 48 H 1.09001 * 109.47189 * 59.99432 * 26 25 24 49 49 H 1.09003 * 109.46740 * 300.00107 * 27 26 25 50 50 H 1.08996 * 109.47257 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.7585 -1.2275 5 6 2.5555 0.1589 -2.4730 6 8 1.9715 0.8666 -3.2662 7 7 2.6676 -1.1640 -2.7056 8 6 3.4602 -2.0171 -1.8097 9 6 4.4826 -2.7939 -2.6452 10 6 3.7551 -3.5543 -3.7563 11 6 3.0381 -2.5599 -4.6725 12 1 3.7647 -1.8663 -5.0959 13 7 2.3681 -3.2866 -5.7538 14 6 3.0624 -3.6242 -6.8847 15 1 4.1028 -3.3510 -6.9815 16 6 2.4277 -4.3133 -7.9090 17 7 1.1599 -4.6467 -7.7909 18 14 3.3728 -4.7672 -9.4551 19 1 3.9975 -6.1028 -9.2791 20 1 2.4417 -4.8045 -10.6113 21 1 4.4305 -3.7549 -9.7037 22 6 1.9996 -1.7798 -3.8603 23 6 2.7498 2.2299 -1.1233 24 6 3.2600 2.9879 -2.3505 25 6 4.7849 2.8829 -2.4172 26 6 5.1908 1.4115 -2.5214 27 6 4.6806 0.6535 -1.2942 28 1 -1.0501 0.0000 0.0003 29 1 3.0098 -1.0264 -0.0302 30 1 3.0091 0.4883 0.9047 31 1 2.8021 -2.7167 -1.2944 32 1 3.9804 -1.3985 -1.0783 33 1 5.0121 -3.5011 -2.0067 34 1 5.1958 -2.0982 -3.0872 35 1 3.0250 -4.2324 -3.3144 36 1 4.4778 -4.1273 -4.3372 37 1 1.4327 -3.5285 -5.6685 38 1 0.7163 -5.1279 -8.5069 39 1 1.5565 -1.0031 -4.4838 40 1 1.2220 -2.4597 -3.5124 41 1 1.6633 2.3046 -1.0754 42 1 3.1839 2.6636 -0.2224 43 1 2.9704 4.0361 -2.2765 44 1 2.8262 2.5543 -3.2517 45 1 5.2187 3.3166 -1.5160 46 1 5.1484 3.4226 -3.2918 47 1 6.2772 1.3367 -2.5693 48 1 4.7570 0.9778 -3.4225 49 1 5.1143 1.0871 -0.3931 50 1 4.9702 -0.3947 -1.3683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211361116.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:54:00 Heat of formation + Delta-G solvation = 11.385956 kcal Electronic energy + Delta-G solvation = -28817.755637 eV Core-core repulsion = 25231.736833 eV Total energy + Delta-G solvation = -3586.018804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.33643 -39.38245 -37.99070 -36.45871 -35.40459 -33.84212 -32.79958 -32.39160 -31.58769 -29.95185 -27.80371 -26.78919 -25.89590 -23.82973 -23.42843 -23.16538 -21.89179 -21.05249 -19.76451 -19.19411 -19.07133 -17.46666 -17.00927 -16.85473 -16.38573 -16.05603 -15.85819 -15.42535 -15.33143 -14.97249 -14.92897 -14.85350 -14.61980 -14.54427 -13.98665 -13.89534 -13.61461 -13.27148 -13.10219 -12.93788 -12.91298 -12.83077 -12.79822 -12.33495 -12.20478 -12.13221 -11.92592 -11.84018 -11.73186 -11.65421 -11.57305 -11.43779 -11.11376 -10.93089 -10.90712 -10.62934 -10.25341 -9.59983 -9.04828 -7.97704 -5.27514 1.44189 1.46494 1.54732 1.68045 1.86952 1.95730 1.98874 2.54405 3.32345 3.36137 3.45689 3.72824 3.75802 3.83605 3.93187 4.01584 4.08373 4.12307 4.20087 4.27044 4.33721 4.34733 4.42193 4.50714 4.53619 4.65605 4.68966 4.75440 4.76700 4.80295 4.85115 4.87653 4.94371 5.02837 5.07633 5.14570 5.16941 5.18275 5.28140 5.34287 5.36555 5.40595 5.43877 5.44387 5.53289 5.59703 5.70600 6.23779 6.52718 6.73638 7.27183 7.29499 8.02233 8.26794 9.25786 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.016894 B = 0.003696 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.006609 B = 7574.664844 C = 7979.358221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.201 4.201 3 C -0.020 4.020 4 C -0.062 4.062 5 C 0.523 3.477 6 O -0.582 6.582 7 N -0.600 5.600 8 C 0.081 3.919 9 C -0.125 4.125 10 C -0.127 4.127 11 C 0.170 3.830 12 H 0.029 0.971 13 N -0.736 5.736 14 C -0.240 4.240 15 H 0.073 0.927 16 C -0.073 4.073 17 N -0.969 5.969 18 Si 0.973 3.027 19 H -0.282 1.282 20 H -0.296 1.296 21 H -0.272 1.272 22 C 0.121 3.879 23 C -0.086 4.086 24 C -0.142 4.142 25 C -0.112 4.112 26 C -0.124 4.124 27 C -0.116 4.116 28 H 0.228 0.772 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.079 0.921 32 H 0.139 0.861 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.372 0.628 38 H 0.251 0.749 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.041 0.959 42 H 0.100 0.900 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.087 0.913 46 H 0.051 0.949 47 H 0.086 0.914 48 H 0.023 0.977 49 H 0.119 0.881 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.848 11.384 23.714 28.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.201 4.201 3 C -0.056 4.056 4 C -0.065 4.065 5 C 0.313 3.687 6 O -0.462 6.462 7 N -0.332 5.332 8 C -0.040 4.040 9 C -0.163 4.163 10 C -0.167 4.167 11 C 0.061 3.939 12 H 0.047 0.953 13 N -0.377 5.377 14 C -0.371 4.371 15 H 0.091 0.909 16 C -0.266 4.266 17 N -0.620 5.620 18 Si 0.802 3.198 19 H -0.209 1.209 20 H -0.222 1.222 21 H -0.197 1.197 22 C -0.003 4.003 23 C -0.124 4.124 24 C -0.179 4.179 25 C -0.150 4.150 26 C -0.161 4.161 27 C -0.153 4.153 28 H 0.244 0.756 29 H 0.139 0.861 30 H 0.152 0.848 31 H 0.097 0.903 32 H 0.156 0.844 33 H 0.125 0.875 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.204 0.796 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.118 0.882 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.106 0.894 46 H 0.070 0.930 47 H 0.104 0.896 48 H 0.042 0.958 49 H 0.137 0.863 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.691 11.751 23.166 27.725 hybrid contribution -1.085 -0.574 -1.894 2.257 sum 8.606 11.178 21.272 25.524 Atomic orbital electron populations 1.25532 0.97108 1.01201 1.00461 1.23502 0.95468 1.00389 1.00777 1.19507 0.84125 1.03600 0.98379 1.20871 0.97961 0.96785 0.90853 1.21190 0.78659 0.81055 0.87802 1.90583 1.45540 1.60242 1.49857 1.48074 1.50591 1.07631 1.26922 1.22761 0.93872 0.94595 0.92768 1.21935 0.97600 0.99647 0.97138 1.22057 0.99307 0.98384 0.96981 1.20608 0.93078 0.92241 0.87982 0.95335 1.42507 1.11264 1.67112 1.16768 1.19541 0.94584 1.28398 0.94602 0.90923 1.25555 0.97007 1.02137 1.01858 1.69822 1.11320 1.46338 1.34517 0.85150 0.77411 0.78229 0.79042 1.20924 1.22232 1.19673 1.21478 0.94957 0.96196 0.87682 1.21360 0.99939 0.91883 0.99228 1.21839 0.96744 0.99736 0.99601 1.21504 0.94867 0.96200 1.02391 1.21552 1.01522 0.95849 0.97224 1.22005 0.89899 1.02741 1.00655 0.75573 0.86080 0.84799 0.90300 0.84428 0.87483 0.91605 0.92796 0.93482 0.79644 0.93975 0.92752 0.92160 0.94064 0.88159 0.92227 0.92542 0.89424 0.93024 0.89591 0.95834 0.86302 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -5.16 19.25 74.32 1.43 -3.73 16 2 C -0.20 -4.38 11.38 31.13 0.35 -4.02 16 3 C -0.02 -0.29 4.38 28.79 0.13 -0.17 16 4 C -0.06 -1.17 0.28 -52.93 -0.01 -1.18 16 5 C 0.52 15.67 4.14 87.66 0.36 16.03 16 6 O -0.58 -23.34 12.86 -3.05 -0.04 -23.38 16 7 N -0.60 -17.46 2.96 -818.88 -2.43 -19.89 16 8 C 0.08 1.56 4.07 86.36 0.35 1.91 16 9 C -0.12 -2.68 5.98 30.67 0.18 -2.50 16 10 C -0.13 -4.24 5.47 30.62 0.17 -4.07 16 11 C 0.17 7.08 2.92 45.07 0.13 7.21 16 12 H 0.03 1.29 8.08 -2.38 -0.02 1.27 16 13 N -0.74 -38.77 5.12 -322.56 -1.65 -40.42 16 14 C -0.24 -13.71 9.93 84.03 0.83 -12.87 16 15 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 16 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 17 N -0.97 -60.73 13.06 21.65 0.28 -60.45 16 18 Si 0.97 47.13 29.55 68.60 2.03 49.16 16 19 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 21 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 22 C 0.12 4.65 5.91 86.36 0.51 5.16 16 23 C -0.09 -1.75 4.22 30.59 0.13 -1.62 16 24 C -0.14 -3.36 5.63 30.60 0.17 -3.19 16 25 C -0.11 -2.05 5.92 30.59 0.18 -1.87 16 26 C -0.12 -2.29 5.70 30.59 0.17 -2.12 16 27 C -0.12 -1.51 4.45 30.59 0.14 -1.38 16 28 H 0.23 4.04 7.80 -4.41 -0.03 4.00 16 29 H 0.12 1.30 4.54 -2.39 -0.01 1.29 16 30 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 1.41 8.09 -2.39 -0.02 1.39 16 32 H 0.14 1.64 2.41 -2.39 -0.01 1.64 16 33 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.37 21.03 7.80 -92.71 -0.72 20.30 16 38 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 39 H 0.05 2.47 7.00 -2.38 -0.02 2.45 16 40 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.04 1.04 7.38 -2.39 -0.02 1.03 16 42 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.06 1.87 5.28 -2.39 -0.01 1.86 16 45 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 47 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.02 0.63 7.22 -2.39 -0.02 0.61 16 49 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.09 1.01 4.94 -2.39 -0.01 1.00 16 Total: -1.00 -77.84 374.39 4.10 -73.75 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: 0.21 Total: 33.48 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 5.70 Total: -12.24 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -3.80 Total: -120.76 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.04 Total: -23.38 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -77.84 4.10 -73.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211361116.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.133 kcal (2) G-P(sol) polarization free energy of solvation -77.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds