Wall clock time and date at job start Fri Apr 10 2020 23:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38419 * 120.75177 * 2 1 4 4 C 1.38876 * 119.11194 * 179.97438 * 3 2 1 5 5 O 1.35678 * 119.68725 * 180.29246 * 4 3 2 6 6 C 1.42897 * 117.00304 * 179.72592 * 5 4 3 7 7 C 1.53006 * 109.47103 * 150.00161 * 6 5 4 8 8 C 1.52999 * 109.47061 * 270.00012 * 6 5 4 9 9 N 1.32281 * 120.63297 * 0.02562 * 4 3 2 10 10 C 1.31930 * 121.64532 * 359.97438 * 9 4 3 11 11 C 1.38088 * 120.83705 * 359.97438 * 10 9 4 12 12 C 1.50699 * 120.35934 * 180.02562 * 11 10 9 13 13 N 1.46907 * 109.46740 * 275.87285 * 12 11 10 14 14 C 1.46846 * 111.00021 * 75.54824 * 13 12 11 15 15 C 1.53035 * 109.52314 * 174.15798 * 14 13 12 16 16 C 1.53118 * 109.27808 * 59.17964 * 15 14 13 17 17 C 1.53125 * 109.16085 * 302.34355 * 16 15 14 18 18 H 1.08996 * 109.50057 * 297.71361 * 17 16 15 19 19 C 1.50702 * 109.50498 * 177.63803 * 17 16 15 20 20 H 1.08000 * 119.99818 * 240.00135 * 19 17 16 21 21 C 1.37875 * 120.00050 * 59.99915 * 19 17 16 22 22 N 1.31514 * 119.99987 * 359.97438 * 21 19 17 23 23 Si 1.86796 * 119.99861 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47468 * 89.99842 * 23 21 19 25 25 H 1.48498 * 109.47071 * 209.99806 * 23 21 19 26 26 H 1.48500 * 109.47165 * 329.99654 * 23 21 19 27 27 C 1.46845 * 111.00271 * 311.33411 * 13 12 11 28 28 H 1.09007 * 109.47403 * 276.28861 * 1 2 3 29 29 H 1.08993 * 109.47622 * 36.29685 * 1 2 3 30 30 H 1.09005 * 109.47006 * 156.29712 * 1 2 3 31 31 H 1.08003 * 120.44919 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.47396 * 30.00109 * 6 5 4 33 33 H 1.08998 * 109.47037 * 59.99728 * 7 6 5 34 34 H 1.09000 * 109.46832 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.46978 * 300.00291 * 7 6 5 36 36 H 1.09000 * 109.47306 * 179.97438 * 8 6 5 37 37 H 1.09000 * 109.47309 * 299.99782 * 8 6 5 38 38 H 1.09000 * 109.47165 * 59.99886 * 8 6 5 39 39 H 1.08001 * 119.58159 * 179.97438 * 10 9 4 40 40 H 1.08998 * 109.47229 * 35.86794 * 12 11 10 41 41 H 1.08994 * 109.47422 * 155.87677 * 12 11 10 42 42 H 1.09001 * 109.46161 * 294.17540 * 14 13 12 43 43 H 1.09001 * 109.46284 * 54.13804 * 14 13 12 44 44 H 1.09002 * 109.50510 * 179.11899 * 15 14 13 45 45 H 1.09001 * 109.50450 * 299.23567 * 15 14 13 46 46 H 1.08998 * 109.52843 * 62.24935 * 16 15 14 47 47 H 1.08999 * 109.52168 * 182.38018 * 16 15 14 48 48 H 0.96997 * 120.00037 * 180.02562 * 22 21 19 49 49 H 1.09000 * 109.46273 * 305.85888 * 27 13 12 50 50 H 1.09003 * 109.46343 * 65.82255 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2148 1.1896 0.0000 4 6 3.6030 1.1498 0.0005 5 8 4.3084 2.3088 0.0066 6 6 5.7333 2.2010 0.0129 7 6 6.3394 3.4100 -0.7027 8 6 6.2351 2.1591 1.4576 9 7 4.2441 -0.0072 0.0005 10 6 3.5973 -1.1570 0.0005 11 6 2.2168 -1.1926 0.0011 12 6 1.4889 -2.5121 0.0016 13 7 1.3760 -3.0096 -1.3760 14 6 2.6579 -3.5489 -1.8475 15 6 2.4683 -4.1875 -3.2253 16 6 1.9463 -3.1321 -4.2042 17 6 0.6355 -2.5519 -3.6657 18 1 -0.1123 -3.3422 -3.5998 19 6 0.1446 -1.4711 -4.5942 20 1 0.0154 -0.4630 -4.2289 21 6 -0.1393 -1.7692 -5.9100 22 7 0.0186 -2.9967 -6.3550 23 14 -0.7470 -0.4294 -7.0610 24 1 0.4139 0.2225 -7.7186 25 1 -1.6296 -1.0276 -8.0946 26 1 -1.5085 0.5820 -6.2850 27 6 0.8782 -1.9607 -2.2752 28 1 -0.3634 0.1126 1.0215 29 1 -0.3634 0.8282 -0.6083 30 1 -0.3633 -0.9410 -0.4131 31 1 1.6945 2.1360 -0.0004 32 1 6.0309 1.2874 -0.5018 33 1 6.0418 4.3236 -0.1880 34 1 7.4263 3.3280 -0.6974 35 1 5.9818 3.4399 -1.7319 36 1 7.3220 2.0765 1.4625 37 1 5.9376 3.0727 1.9723 38 1 5.8033 1.2979 1.9674 39 1 4.1544 -2.0822 0.0001 40 1 2.0428 -3.2324 0.6037 41 1 0.4924 -2.3772 0.4219 42 1 3.3873 -2.7419 -1.9185 43 1 3.0160 -4.3011 -1.1447 44 1 3.4232 -4.5738 -3.5819 45 1 1.7494 -5.0035 -3.1524 46 1 2.6824 -2.3348 -4.3071 47 1 1.7697 -3.5926 -5.1762 48 1 -0.1808 -3.2063 -7.2808 49 1 -0.0563 -1.5595 -1.8829 50 1 1.6159 -1.1612 -2.3441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235427217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:54:49 Heat of formation + Delta-G solvation = -13.731091 kcal Electronic energy + Delta-G solvation = -28026.789644 eV Core-core repulsion = 24439.681683 eV Total energy + Delta-G solvation = -3587.107961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.85417 -39.03603 -37.59094 -34.47537 -33.54920 -33.22507 -31.88301 -29.95536 -29.66670 -27.93260 -27.44006 -25.82482 -24.94004 -23.13264 -22.86273 -21.38681 -21.26124 -20.41252 -18.48770 -18.01352 -16.92879 -16.44273 -15.70732 -15.44891 -15.07463 -14.80291 -14.52974 -14.33395 -14.11614 -13.78327 -13.72764 -13.41580 -12.90627 -12.76437 -12.61799 -12.55386 -12.49725 -12.37752 -12.36314 -12.24176 -11.90586 -11.58805 -11.41787 -11.19540 -11.01095 -10.93467 -10.78913 -10.63018 -10.59768 -10.08415 -9.82633 -9.53778 -9.46696 -9.27705 -8.99666 -8.67091 -8.31458 -8.23104 -7.68177 -5.95897 -4.01794 1.26922 1.36980 3.02678 3.31492 3.38338 3.41140 3.82825 4.35390 4.42332 4.63641 4.72177 4.83479 4.85906 4.96373 5.04027 5.09763 5.16402 5.34186 5.35514 5.50436 5.52262 5.55227 5.62428 5.65780 5.69800 5.71918 5.80828 5.83665 5.91801 5.98719 6.00181 6.04266 6.10262 6.12860 6.31832 6.45798 6.47150 6.56285 6.61309 6.73495 6.79055 7.00896 7.23321 7.34613 7.40907 7.64793 7.75810 7.81178 7.95777 8.09739 8.19242 8.50136 9.02111 9.62450 11.10046 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.012187 B = 0.003969 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.984398 B = 7052.640177 C = 7875.094017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.010 3.990 3 C -0.194 4.194 4 C 0.320 3.680 5 O -0.305 6.305 6 C 0.081 3.919 7 C -0.151 4.151 8 C -0.166 4.166 9 N -0.545 5.545 10 C 0.147 3.853 11 C -0.199 4.199 12 C 0.097 3.903 13 N -0.526 5.526 14 C 0.057 3.943 15 C -0.117 4.117 16 C -0.110 4.110 17 C 0.054 3.946 18 H 0.033 0.967 19 C -0.513 4.513 20 H 0.052 0.948 21 C 0.064 3.936 22 N -0.888 5.888 23 Si 0.888 3.112 24 H -0.282 1.282 25 H -0.286 1.286 26 H -0.275 1.275 27 C 0.064 3.936 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.137 0.863 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.153 0.847 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.026 0.974 43 H 0.058 0.942 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.027 0.973 47 H 0.090 0.910 48 H 0.259 0.741 49 H 0.064 0.936 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.533 5.876 15.428 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.002 3.998 3 C -0.215 4.215 4 C 0.141 3.859 5 O -0.213 6.213 6 C 0.025 3.975 7 C -0.208 4.208 8 C -0.224 4.224 9 N -0.268 5.268 10 C -0.009 4.009 11 C -0.204 4.204 12 C -0.032 4.032 13 N -0.248 5.248 14 C -0.071 4.071 15 C -0.155 4.155 16 C -0.148 4.148 17 C 0.036 3.964 18 H 0.051 0.949 19 C -0.552 4.552 20 H 0.070 0.930 21 C -0.137 4.137 22 N -0.527 5.527 23 Si 0.716 3.284 24 H -0.208 1.208 25 H -0.212 1.212 26 H -0.200 1.200 27 C -0.062 4.062 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.155 0.845 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.170 0.830 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.044 0.956 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.046 0.954 47 H 0.109 0.891 48 H 0.069 0.931 49 H 0.082 0.918 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 8.990 5.663 15.246 18.583 hybrid contribution -0.250 1.375 -0.767 1.594 sum 8.740 7.038 14.479 18.318 Atomic orbital electron populations 1.21148 0.89841 1.05061 1.02610 1.19990 0.96777 0.91341 0.91661 1.20873 0.91245 0.99615 1.09760 1.19692 0.88884 0.85000 0.92304 1.86272 1.20646 1.26658 1.87681 1.22287 0.77710 1.00500 0.97021 1.21905 1.00529 0.97353 1.00999 1.22198 1.01394 1.02530 0.96243 1.67198 1.41230 0.98224 1.20141 1.22208 0.91168 0.94415 0.93074 1.21437 0.95281 0.97693 1.05957 1.21199 0.99544 0.89911 0.92505 1.62461 1.26878 1.34685 1.00782 1.22134 0.90093 0.97475 0.97377 1.21670 0.99693 0.99757 0.94377 1.21644 0.97396 0.95813 0.99985 1.18672 0.93715 0.95689 0.88359 0.94859 1.21130 1.43880 0.95288 0.94859 0.92986 1.24913 0.95510 0.95234 0.98082 1.69887 1.48932 1.18145 1.15736 0.86665 0.78752 0.82188 0.80819 1.20837 1.21226 1.19955 1.22460 0.97678 0.91381 0.94724 0.90612 0.90577 0.89052 0.84541 0.89300 0.91791 0.90645 0.91727 0.91293 0.92195 0.92066 0.82976 0.90586 0.89854 0.95594 0.92371 0.93610 0.92060 0.95420 0.89150 0.93097 0.91778 0.96010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 8.86 36.01 0.32 -1.31 16 2 C 0.01 0.15 5.03 -104.35 -0.52 -0.37 16 3 C -0.19 -2.86 9.77 -39.28 -0.38 -3.24 16 4 C 0.32 4.95 7.45 -17.12 -0.13 4.83 16 5 O -0.30 -4.40 9.76 -18.74 -0.18 -4.58 16 6 C 0.08 0.96 3.11 -26.73 -0.08 0.87 16 7 C -0.15 -1.42 9.56 37.16 0.36 -1.07 16 8 C -0.17 -1.66 9.53 37.16 0.35 -1.30 16 9 N -0.54 -8.43 8.65 -13.33 -0.12 -8.54 16 10 C 0.15 2.16 9.41 -17.56 -0.17 1.99 16 11 C -0.20 -2.90 3.80 -104.48 -0.40 -3.30 16 12 C 0.10 1.36 5.30 -4.97 -0.03 1.33 16 13 N -0.53 -9.23 4.86 -236.12 -1.15 -10.38 16 14 C 0.06 0.98 4.92 -3.83 -0.02 0.96 16 15 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 16 C -0.11 -2.63 5.02 -26.61 -0.13 -2.76 16 17 C 0.05 1.35 2.26 -91.69 -0.21 1.14 16 18 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 19 C -0.51 -14.04 8.57 -34.44 -0.30 -14.34 16 20 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 21 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 22 N -0.89 -25.35 11.35 55.43 0.63 -24.72 16 23 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 27 C 0.06 1.32 3.41 -3.84 -0.01 1.31 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.93 8.13 -51.93 -0.42 0.51 16 30 H 0.09 1.24 3.90 -51.93 -0.20 1.04 16 31 H 0.14 1.78 8.06 -52.48 -0.42 1.35 16 32 H 0.09 1.16 6.98 -51.93 -0.36 0.80 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.15 1.96 7.53 -52.49 -0.40 1.56 16 40 H 0.08 0.92 7.86 -51.93 -0.41 0.51 16 41 H 0.08 1.08 6.35 -51.93 -0.33 0.75 16 42 H 0.03 0.46 6.34 -51.93 -0.33 0.13 16 43 H 0.06 0.84 7.96 -51.93 -0.41 0.43 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 48 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 49 H 0.06 1.28 5.34 -51.93 -0.28 1.00 16 50 H 0.02 0.48 6.72 -51.93 -0.35 0.13 16 LS Contribution 379.83 15.07 5.72 5.72 Total: -1.00 -29.61 379.83 -10.14 -39.75 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -8.42 Total: 2.42 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -1.60 Total: -16.03 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -0.63 Total: -43.64 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -0.18 Total: -4.58 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.61 -10.14 -39.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235427217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.021 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds