Wall clock time and date at job start Fri Apr 10 2020 23:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38419 * 120.75177 * 2 1 4 4 C 1.38876 * 119.11194 * 179.97438 * 3 2 1 5 5 O 1.35678 * 119.68725 * 180.29246 * 4 3 2 6 6 C 1.42897 * 117.00304 * 179.72592 * 5 4 3 7 7 C 1.53006 * 109.47103 * 150.00161 * 6 5 4 8 8 C 1.52999 * 109.47061 * 270.00012 * 6 5 4 9 9 N 1.32281 * 120.63297 * 0.02562 * 4 3 2 10 10 C 1.31930 * 121.64532 * 359.97438 * 9 4 3 11 11 C 1.38088 * 120.83705 * 359.97438 * 10 9 4 12 12 C 1.50699 * 120.35934 * 180.02562 * 11 10 9 13 13 N 1.46907 * 109.46740 * 275.87285 * 12 11 10 14 14 C 1.46846 * 111.00021 * 75.54824 * 13 12 11 15 15 C 1.53035 * 109.52314 * 174.15798 * 14 13 12 16 16 C 1.53118 * 109.27808 * 59.17964 * 15 14 13 17 17 C 1.53125 * 109.16085 * 302.34355 * 16 15 14 18 18 H 1.08996 * 109.50057 * 297.71361 * 17 16 15 19 19 C 1.50702 * 109.50498 * 177.63803 * 17 16 15 20 20 H 1.08000 * 119.99818 * 240.00135 * 19 17 16 21 21 C 1.37875 * 120.00050 * 59.99915 * 19 17 16 22 22 N 1.31514 * 119.99987 * 359.97438 * 21 19 17 23 23 Si 1.86796 * 119.99861 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47468 * 89.99842 * 23 21 19 25 25 H 1.48498 * 109.47071 * 209.99806 * 23 21 19 26 26 H 1.48500 * 109.47165 * 329.99654 * 23 21 19 27 27 C 1.46845 * 111.00271 * 311.33411 * 13 12 11 28 28 H 1.09007 * 109.47403 * 276.28861 * 1 2 3 29 29 H 1.08993 * 109.47622 * 36.29685 * 1 2 3 30 30 H 1.09005 * 109.47006 * 156.29712 * 1 2 3 31 31 H 1.08003 * 120.44919 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.47396 * 30.00109 * 6 5 4 33 33 H 1.08998 * 109.47037 * 59.99728 * 7 6 5 34 34 H 1.09000 * 109.46832 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.46978 * 300.00291 * 7 6 5 36 36 H 1.09000 * 109.47306 * 179.97438 * 8 6 5 37 37 H 1.09000 * 109.47309 * 299.99782 * 8 6 5 38 38 H 1.09000 * 109.47165 * 59.99886 * 8 6 5 39 39 H 1.08001 * 119.58159 * 179.97438 * 10 9 4 40 40 H 1.08998 * 109.47229 * 35.86794 * 12 11 10 41 41 H 1.08994 * 109.47422 * 155.87677 * 12 11 10 42 42 H 1.09001 * 109.46161 * 294.17540 * 14 13 12 43 43 H 1.09001 * 109.46284 * 54.13804 * 14 13 12 44 44 H 1.09002 * 109.50510 * 179.11899 * 15 14 13 45 45 H 1.09001 * 109.50450 * 299.23567 * 15 14 13 46 46 H 1.08998 * 109.52843 * 62.24935 * 16 15 14 47 47 H 1.08999 * 109.52168 * 182.38018 * 16 15 14 48 48 H 0.96997 * 120.00037 * 180.02562 * 22 21 19 49 49 H 1.09000 * 109.46273 * 305.85888 * 27 13 12 50 50 H 1.09003 * 109.46343 * 65.82255 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2148 1.1896 0.0000 4 6 3.6030 1.1498 0.0005 5 8 4.3084 2.3088 0.0066 6 6 5.7333 2.2010 0.0129 7 6 6.3394 3.4100 -0.7027 8 6 6.2351 2.1591 1.4576 9 7 4.2441 -0.0072 0.0005 10 6 3.5973 -1.1570 0.0005 11 6 2.2168 -1.1926 0.0011 12 6 1.4889 -2.5121 0.0016 13 7 1.3760 -3.0096 -1.3760 14 6 2.6579 -3.5489 -1.8475 15 6 2.4683 -4.1875 -3.2253 16 6 1.9463 -3.1321 -4.2042 17 6 0.6355 -2.5519 -3.6657 18 1 -0.1123 -3.3422 -3.5998 19 6 0.1446 -1.4711 -4.5942 20 1 0.0154 -0.4630 -4.2289 21 6 -0.1393 -1.7692 -5.9100 22 7 0.0186 -2.9967 -6.3550 23 14 -0.7470 -0.4294 -7.0610 24 1 0.4139 0.2225 -7.7186 25 1 -1.6296 -1.0276 -8.0946 26 1 -1.5085 0.5820 -6.2850 27 6 0.8782 -1.9607 -2.2752 28 1 -0.3634 0.1126 1.0215 29 1 -0.3634 0.8282 -0.6083 30 1 -0.3633 -0.9410 -0.4131 31 1 1.6945 2.1360 -0.0004 32 1 6.0309 1.2874 -0.5018 33 1 6.0418 4.3236 -0.1880 34 1 7.4263 3.3280 -0.6974 35 1 5.9818 3.4399 -1.7319 36 1 7.3220 2.0765 1.4625 37 1 5.9376 3.0727 1.9723 38 1 5.8033 1.2979 1.9674 39 1 4.1544 -2.0822 0.0001 40 1 2.0428 -3.2324 0.6037 41 1 0.4924 -2.3772 0.4219 42 1 3.3873 -2.7419 -1.9185 43 1 3.0160 -4.3011 -1.1447 44 1 3.4232 -4.5738 -3.5819 45 1 1.7494 -5.0035 -3.1524 46 1 2.6824 -2.3348 -4.3071 47 1 1.7697 -3.5926 -5.1762 48 1 -0.1808 -3.2063 -7.2808 49 1 -0.0563 -1.5595 -1.8829 50 1 1.6159 -1.1612 -2.3441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235427217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:54:48 Heat of formation + Delta-G solvation = -31.728392 kcal Electronic energy + Delta-G solvation = -28027.570065 eV Core-core repulsion = 24439.681683 eV Total energy + Delta-G solvation = -3587.888383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.97185 -40.26121 -38.91916 -35.96760 -34.92012 -34.28099 -33.46361 -31.67418 -30.99184 -29.01852 -28.21934 -27.09108 -26.91407 -24.36834 -24.03670 -23.05932 -22.51877 -21.53808 -20.16856 -19.05925 -18.44924 -18.01828 -16.96164 -16.70181 -16.62963 -15.99451 -15.87736 -15.54663 -15.49187 -15.11831 -14.86106 -14.66578 -14.28853 -14.19046 -14.05435 -13.80029 -13.69314 -13.60245 -13.23317 -13.19656 -13.02814 -12.85475 -12.83952 -12.77554 -12.70611 -12.38945 -12.20174 -11.89993 -11.75677 -11.73312 -11.67431 -11.38286 -10.87014 -10.65603 -10.54915 -10.41592 -10.32741 -9.41104 -9.08459 -8.07885 -6.21274 0.15413 0.25496 1.38667 1.39777 1.49468 2.02899 2.41818 2.70230 3.19114 3.24334 3.31328 3.77053 3.88680 3.91648 3.95713 4.00852 4.07473 4.23619 4.25454 4.31041 4.36919 4.49658 4.55726 4.65664 4.67218 4.72766 4.75233 4.77685 4.80099 4.82366 4.85114 4.90759 4.93983 5.00536 5.02571 5.10908 5.15509 5.17712 5.22206 5.26580 5.38708 5.46664 5.53887 5.58036 5.63692 5.98413 6.13461 6.22328 6.28369 6.37599 6.47814 6.84161 6.91590 7.46300 8.96569 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.012187 B = 0.003969 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.984398 B = 7052.640177 C = 7875.094017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.004 3.996 3 C -0.208 4.208 4 C 0.306 3.694 5 O -0.316 6.316 6 C 0.072 3.928 7 C -0.146 4.146 8 C -0.158 4.158 9 N -0.556 5.556 10 C 0.140 3.860 11 C -0.207 4.207 12 C 0.101 3.899 13 N -0.532 5.532 14 C 0.061 3.939 15 C -0.111 4.111 16 C -0.103 4.103 17 C 0.051 3.949 18 H 0.000 1.000 19 C -0.533 4.533 20 H 0.047 0.953 21 C 0.016 3.984 22 N -0.914 5.914 23 Si 0.947 3.053 24 H -0.280 1.280 25 H -0.281 1.281 26 H -0.267 1.267 27 C 0.087 3.913 28 H 0.103 0.897 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.171 0.829 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.022 0.978 43 H 0.097 0.903 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.010 0.990 47 H 0.056 0.944 48 H 0.260 0.740 49 H 0.068 0.932 50 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.206 6.313 17.065 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.004 4.004 3 C -0.229 4.229 4 C 0.128 3.872 5 O -0.224 6.224 6 C 0.017 3.983 7 C -0.203 4.203 8 C -0.216 4.216 9 N -0.280 5.280 10 C -0.015 4.015 11 C -0.211 4.211 12 C -0.027 4.027 13 N -0.254 5.254 14 C -0.066 4.066 15 C -0.149 4.149 16 C -0.142 4.142 17 C 0.033 3.967 18 H 0.018 0.982 19 C -0.572 4.572 20 H 0.065 0.935 21 C -0.182 4.182 22 N -0.554 5.554 23 Si 0.773 3.227 24 H -0.206 1.206 25 H -0.207 1.207 26 H -0.192 1.192 27 C -0.041 4.041 28 H 0.121 0.879 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.165 0.835 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.188 0.812 40 H 0.123 0.877 41 H 0.114 0.886 42 H 0.040 0.960 43 H 0.115 0.885 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.029 0.971 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 9.668 6.105 16.901 20.406 hybrid contribution -0.430 1.240 -1.273 1.829 sum 9.238 7.345 15.628 19.584 Atomic orbital electron populations 1.21146 0.88616 1.04303 1.04218 1.20278 0.97767 0.91332 0.91034 1.21098 0.91290 1.00382 1.10086 1.19940 0.89424 0.85341 0.92497 1.86258 1.22039 1.26500 1.87634 1.22542 0.76586 1.00859 0.98360 1.21918 1.01804 0.96576 1.00011 1.22142 1.02601 1.02098 0.94741 1.67230 1.41594 0.98527 1.20643 1.22569 0.91546 0.94852 0.92578 1.21514 0.95359 0.97928 1.06293 1.21301 1.00810 0.90256 0.90349 1.62384 1.27374 1.33725 1.01929 1.22138 0.89771 0.98110 0.96615 1.21588 1.00212 0.98173 0.94953 1.21450 0.96715 0.96301 0.99716 1.18608 0.93078 0.94263 0.90793 0.98188 1.21498 1.44091 0.95752 0.95817 0.93463 1.25657 0.95746 0.97250 0.99595 1.70024 1.49574 1.19762 1.15990 0.85720 0.78292 0.79758 0.78903 1.20631 1.20657 1.19151 1.22027 0.97616 0.91262 0.93147 0.87866 0.90702 0.90150 0.83482 0.90915 0.91051 0.88272 0.92842 0.89117 0.91544 0.93637 0.81206 0.87729 0.88640 0.95988 0.88470 0.91620 0.92636 0.97127 0.92557 0.93122 0.91338 0.97753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.86 71.24 0.63 -2.34 16 2 C 0.00 0.11 5.03 -19.69 -0.10 0.01 16 3 C -0.21 -6.01 9.77 22.47 0.22 -5.79 16 4 C 0.31 9.41 7.45 84.78 0.63 10.04 16 5 O -0.32 -9.07 9.76 -89.95 -0.88 -9.95 16 6 C 0.07 1.66 3.11 30.60 0.10 1.75 16 7 C -0.15 -2.57 9.56 71.98 0.69 -1.88 16 8 C -0.16 -2.94 9.53 71.98 0.69 -2.26 16 9 N -0.56 -16.88 8.65 -308.93 -2.67 -19.55 16 10 C 0.14 3.90 9.41 84.64 0.80 4.70 16 11 C -0.21 -5.67 3.80 -19.77 -0.08 -5.74 16 12 C 0.10 2.54 5.30 85.56 0.45 3.00 16 13 N -0.53 -17.76 4.86 -900.93 -4.38 -22.14 16 14 C 0.06 1.96 4.92 86.33 0.42 2.38 16 15 C -0.11 -4.25 6.09 30.65 0.19 -4.06 16 16 C -0.10 -5.07 5.02 30.68 0.15 -4.92 16 17 C 0.05 2.62 2.26 -11.49 -0.03 2.59 16 18 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 19 C -0.53 -29.93 8.57 25.60 0.22 -29.71 16 20 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 21 C 0.02 0.92 5.30 84.65 0.45 1.37 16 22 N -0.91 -53.62 11.35 21.45 0.24 -53.38 16 23 Si 0.95 44.40 29.54 68.60 2.03 46.43 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 27 C 0.09 3.57 3.41 86.32 0.29 3.87 16 28 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.07 1.76 8.13 -2.39 -0.02 1.75 16 30 H 0.08 2.07 3.90 -2.38 -0.01 2.07 16 31 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 32 H 0.07 1.89 6.98 -2.39 -0.02 1.87 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 34 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.17 3.95 7.53 -2.91 -0.02 3.93 16 40 H 0.10 2.09 7.86 -2.39 -0.02 2.07 16 41 H 0.10 2.21 6.35 -2.39 -0.02 2.19 16 42 H 0.02 0.73 6.34 -2.39 -0.02 0.72 16 43 H 0.10 2.41 7.96 -2.39 -0.02 2.39 16 44 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.06 3.12 6.15 -2.39 -0.01 3.11 16 48 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 49 H 0.07 2.73 5.34 -2.39 -0.01 2.72 16 50 H 0.00 0.19 6.72 -2.39 -0.02 0.17 16 Total: -1.00 -65.97 379.83 0.98 -64.99 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.91 Total: 20.60 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 5.73 Total: -27.00 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -6.80 Total: -95.07 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.88 Total: -9.95 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -65.97 0.98 -64.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235427217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.262 kcal (2) G-P(sol) polarization free energy of solvation -65.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds