Wall clock time and date at job start Fri Apr 10 2020 23:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52990 * 109.47111 * 2 1 4 4 N 1.46901 * 109.47080 * 119.99677 * 2 1 3 5 5 C 1.46900 * 111.00269 * 274.56264 * 4 2 1 6 6 C 1.50699 * 109.47427 * 169.99988 * 5 4 2 7 7 O 1.21284 * 119.99962 * 353.88246 * 6 5 4 8 8 N 1.34773 * 119.99950 * 173.87589 * 6 5 4 9 9 C 1.46504 * 119.99977 * 183.64289 * 8 6 5 10 10 C 1.50697 * 109.47219 * 270.00593 * 9 8 6 11 11 H 1.08006 * 120.00064 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00154 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99887 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00065 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47343 * 90.00084 * 14 12 10 16 16 H 1.48502 * 109.46752 * 209.99721 * 14 12 10 17 17 H 1.48492 * 109.47068 * 329.99304 * 14 12 10 18 18 C 1.39927 * 120.00241 * 3.65001 * 8 6 5 19 19 C 1.38867 * 120.07197 * 68.23597 * 18 8 6 20 20 C 1.38114 * 119.93328 * 179.97438 * 19 18 8 21 21 C 1.38281 * 120.06308 * 359.97438 * 20 19 18 22 22 C 1.38277 * 120.14859 * 0.04258 * 21 20 19 23 23 C 1.38121 * 120.06886 * 359.95589 * 22 21 20 24 24 C 1.46904 * 111.00079 * 150.60712 * 4 2 1 25 25 C 1.53003 * 109.47058 * 292.02282 * 24 4 2 26 26 C 1.52998 * 109.47115 * 52.02156 * 24 4 2 27 27 H 1.09000 * 109.47023 * 305.10878 * 1 2 3 28 28 H 1.08992 * 109.46927 * 65.11023 * 1 2 3 29 29 H 1.09005 * 109.46716 * 185.10976 * 1 2 3 30 30 H 1.08995 * 109.47325 * 239.99648 * 2 1 3 31 31 H 1.08999 * 109.47964 * 59.99980 * 3 2 1 32 32 H 1.09008 * 109.47629 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47084 * 299.99442 * 3 2 1 34 34 H 1.08997 * 109.47305 * 49.99681 * 5 4 2 35 35 H 1.09003 * 109.46958 * 290.00277 * 5 4 2 36 36 H 1.09000 * 109.46810 * 30.00490 * 9 8 6 37 37 H 1.08999 * 109.47012 * 150.00706 * 9 8 6 38 38 H 0.97000 * 119.99731 * 180.02562 * 13 12 10 39 39 H 1.08007 * 120.03709 * 359.70521 * 19 18 8 40 40 H 1.07995 * 119.96908 * 179.97438 * 20 19 18 41 41 H 1.08003 * 119.92203 * 179.97438 * 21 20 19 42 42 H 1.07995 * 119.96934 * 179.97438 * 22 21 20 43 43 H 1.07996 * 120.03273 * 179.97438 * 23 22 21 44 44 H 1.08997 * 109.47190 * 172.02772 * 24 4 2 45 45 H 1.09005 * 109.46674 * 66.89668 * 25 24 4 46 46 H 1.08991 * 109.47014 * 186.89581 * 25 24 4 47 47 H 1.09004 * 109.47272 * 306.90040 * 25 24 4 48 48 H 1.09006 * 109.46808 * 59.99808 * 26 24 4 49 49 H 1.08998 * 109.47451 * 179.97438 * 26 24 4 50 50 H 1.09000 * 109.47152 * 300.00638 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0923 0.2252 2.3443 6 6 2.3583 -0.5610 3.6022 7 8 2.3656 -1.7734 3.5695 8 7 2.5882 0.0832 4.7635 9 6 2.9255 -0.6780 5.9690 10 6 1.6616 -1.0342 6.7082 11 1 0.7028 -0.7243 6.3192 12 6 1.7290 -1.7549 7.8817 13 7 2.8965 -2.1319 8.3557 14 14 0.1622 -2.1971 8.7976 15 1 -0.3417 -3.5072 8.3129 16 1 0.4471 -2.2839 10.2525 17 1 -0.8643 -1.1516 8.5559 18 6 2.5047 1.4789 4.8179 19 6 1.2763 2.1088 4.6677 20 6 1.1970 3.4866 4.7224 21 6 2.3393 4.2386 4.9270 22 6 3.5641 3.6144 5.0766 23 6 3.6500 2.2370 5.0229 24 6 3.3218 -1.3244 0.9479 25 6 3.1459 -2.4785 -0.0411 26 6 4.2850 -0.2913 0.3600 27 1 -0.3633 0.5910 0.8407 28 1 -0.3633 0.4325 -0.9322 29 1 -0.3633 -1.0237 0.0915 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9564 0.8899 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.1472 0.7591 2.4426 35 1 2.8990 0.9408 2.1857 36 1 3.4512 -1.5904 5.6874 37 1 3.5650 -0.0741 6.6128 38 1 2.9439 -2.6392 9.1811 39 1 0.3843 1.5222 4.5039 40 1 0.2420 3.9771 4.6052 41 1 2.2747 5.3158 4.9690 42 1 4.4544 4.2046 5.2359 43 1 4.6070 1.7501 5.1394 44 1 3.7268 -1.7073 1.8846 45 1 2.8579 -2.0818 -1.0148 46 1 4.0852 -3.0235 -0.1342 47 1 2.3692 -3.1521 0.3209 48 1 4.4102 0.5309 1.0647 49 1 5.2513 -0.7600 0.1738 50 1 3.8798 0.0916 -0.5766 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183036460.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:55:08 Heat of formation + Delta-G solvation = 9.623033 kcal Electronic energy + Delta-G solvation = -28577.436805 eV Core-core repulsion = 24991.341554 eV Total energy + Delta-G solvation = -3586.095250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.27300 -39.04104 -37.66973 -34.76547 -33.27940 -32.68464 -30.92180 -30.58080 -29.35745 -28.24724 -27.48703 -26.30403 -25.66894 -22.91019 -22.43555 -22.03928 -21.49849 -19.48444 -18.52352 -17.11985 -16.54919 -16.25007 -16.14283 -15.36087 -15.14915 -14.84035 -14.49476 -14.26527 -14.05048 -13.78720 -13.50454 -13.34898 -13.14936 -13.05460 -12.69641 -12.45260 -12.25781 -12.23314 -12.06538 -11.89181 -11.72562 -11.51419 -11.39088 -11.35083 -11.19583 -11.01464 -10.82593 -10.81972 -10.62771 -10.42504 -10.26185 -10.14774 -9.68769 -9.17376 -8.70009 -8.55689 -8.41860 -8.01769 -7.64176 -6.03940 -4.07777 1.56540 1.63574 3.33004 3.34505 3.38838 3.42630 3.61301 4.01747 4.16669 4.46574 4.83758 4.93118 5.07519 5.09573 5.16335 5.18236 5.26108 5.29240 5.31439 5.35647 5.44761 5.49082 5.54934 5.60400 5.67842 5.70760 5.72527 5.80921 5.81792 5.85449 5.91323 5.99715 6.02579 6.05621 6.23602 6.25355 6.32198 6.36691 6.46812 6.59636 6.72070 6.81116 6.96143 7.19023 7.23220 7.32950 7.38525 7.52236 7.92027 8.21082 8.40015 8.89562 9.05914 9.56658 11.04465 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.010531 B = 0.005089 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.145624 B = 5500.793237 C = 6829.409580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.074 3.926 3 C -0.200 4.200 4 N -0.506 5.506 5 C 0.038 3.962 6 C 0.511 3.489 7 O -0.506 6.506 8 N -0.566 5.566 9 C 0.251 3.749 10 C -0.522 4.522 11 H 0.057 0.943 12 C 0.062 3.938 13 N -0.896 5.896 14 Si 0.898 3.102 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.167 3.833 19 C -0.125 4.125 20 C -0.110 4.110 21 C -0.136 4.136 22 C -0.110 4.110 23 C -0.127 4.127 24 C 0.071 3.929 25 C -0.136 4.136 26 C -0.190 4.190 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.033 0.967 38 H 0.263 0.737 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.097 0.903 45 H 0.047 0.953 46 H 0.055 0.945 47 H 0.067 0.933 48 H 0.054 0.946 49 H 0.057 0.943 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.578 11.449 -16.031 19.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.034 4.034 3 C -0.258 4.258 4 N -0.230 5.230 5 C -0.093 4.093 6 C 0.298 3.702 7 O -0.380 6.380 8 N -0.295 5.295 9 C 0.133 3.867 10 C -0.561 4.561 11 H 0.076 0.924 12 C -0.140 4.140 13 N -0.535 5.535 14 Si 0.726 3.274 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.199 1.199 18 C 0.075 3.925 19 C -0.145 4.145 20 C -0.128 4.128 21 C -0.154 4.154 22 C -0.128 4.128 23 C -0.147 4.147 24 C -0.037 4.037 25 C -0.194 4.194 26 C -0.249 4.249 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.115 0.885 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.336 10.226 -15.765 18.794 hybrid contribution -0.301 0.519 0.651 0.885 sum 0.035 10.745 -15.114 18.544 Atomic orbital electron populations 1.21787 0.94511 1.02556 1.00864 1.21734 0.95854 0.92575 0.93273 1.22936 1.02614 0.97891 1.02374 1.62040 1.26954 1.30867 1.03128 1.22093 1.02520 0.94502 0.90180 1.20334 0.77411 0.88414 0.84036 1.90675 1.48558 1.13534 1.85271 1.46018 1.68692 1.03384 1.11454 1.19383 0.96680 0.91409 0.79237 1.21360 0.92953 1.34843 1.06918 0.92430 1.24903 0.96385 0.95532 0.97159 1.69929 1.23520 1.38287 1.21739 0.86494 0.83271 0.78996 0.78675 1.20489 1.21152 1.19918 1.17741 0.92670 0.84096 0.98038 1.21391 0.96948 0.94752 1.01395 1.20969 0.98336 0.93366 1.00166 1.21043 0.92833 0.99486 1.02027 1.20958 0.97701 0.94009 1.00169 1.21325 0.98130 0.93831 1.01382 1.21834 0.87525 0.94032 1.00348 1.21770 1.01893 0.97933 0.97767 1.22786 1.00595 1.00298 1.01179 0.92889 0.92830 0.91765 0.90040 0.91982 0.91159 0.92525 0.88450 0.92181 0.93618 0.94866 0.92726 0.85959 0.86191 0.86455 0.86185 0.85906 0.88498 0.93381 0.92624 0.91437 0.92691 0.92379 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.38 37.16 0.35 -1.19 16 2 C 0.07 0.85 2.23 -67.72 -0.15 0.70 16 3 C -0.20 -2.04 7.53 37.15 0.28 -1.76 16 4 N -0.51 -7.50 4.02 -220.15 -0.88 -8.38 16 5 C 0.04 0.60 2.60 -4.98 -0.01 0.59 16 6 C 0.51 10.70 7.01 -10.99 -0.08 10.63 16 7 O -0.51 -12.58 14.37 5.55 0.08 -12.50 16 8 N -0.57 -12.21 2.50 -114.74 -0.29 -12.50 16 9 C 0.25 6.60 5.08 -5.19 -0.03 6.57 16 10 C -0.52 -14.99 9.39 -34.44 -0.32 -15.31 16 11 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 12 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 13 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 14 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 18 C 0.17 3.02 4.35 -83.69 -0.36 2.66 16 19 C -0.13 -2.02 8.55 -39.39 -0.34 -2.36 16 20 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 21 C -0.14 -1.65 10.04 -39.55 -0.40 -2.05 16 22 C -0.11 -1.43 10.04 -39.61 -0.40 -1.83 16 23 C -0.13 -2.02 9.70 -39.39 -0.38 -2.41 16 24 C 0.07 1.02 2.52 -67.71 -0.17 0.85 16 25 C -0.14 -1.71 9.08 37.16 0.34 -1.38 16 26 C -0.19 -2.21 7.36 37.16 0.27 -1.94 16 27 H 0.05 0.61 7.49 -51.93 -0.39 0.22 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.88 5.54 -51.93 -0.29 0.59 16 31 H 0.06 0.67 6.35 -51.93 -0.33 0.34 16 32 H 0.07 0.71 4.37 -51.92 -0.23 0.49 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 1.47 5.82 -51.93 -0.30 1.17 16 35 H 0.06 0.88 5.26 -51.93 -0.27 0.61 16 36 H 0.05 1.34 7.47 -51.93 -0.39 0.95 16 37 H 0.03 0.90 7.87 -51.93 -0.41 0.49 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.12 2.01 7.97 -52.48 -0.42 1.59 16 40 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 42 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 44 H 0.10 1.74 6.00 -51.93 -0.31 1.42 16 45 H 0.05 0.52 6.57 -51.93 -0.34 0.18 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 48 H 0.05 0.67 6.05 -51.93 -0.31 0.35 16 49 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.06 0.65 5.38 -51.93 -0.28 0.37 16 LS Contribution 384.75 15.07 5.80 5.80 Total: -1.00 -32.12 384.75 -9.52 -41.63 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -8.04 Total: 3.12 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -1.89 Total: -8.37 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.43 Total: -46.92 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.08 Total: -12.50 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.12 -9.52 -41.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183036460.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.258 kcal (2) G-P(sol) polarization free energy of solvation -32.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds