Wall clock time and date at job start Fri Apr 10 2020 23:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52990 * 109.47111 * 2 1 4 4 N 1.46901 * 109.47080 * 119.99677 * 2 1 3 5 5 C 1.46900 * 111.00269 * 274.56264 * 4 2 1 6 6 C 1.50699 * 109.47427 * 169.99988 * 5 4 2 7 7 O 1.21284 * 119.99962 * 353.88246 * 6 5 4 8 8 N 1.34773 * 119.99950 * 173.87589 * 6 5 4 9 9 C 1.46504 * 119.99977 * 183.64289 * 8 6 5 10 10 C 1.50697 * 109.47219 * 270.00593 * 9 8 6 11 11 H 1.08006 * 120.00064 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00154 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99887 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00065 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47343 * 90.00084 * 14 12 10 16 16 H 1.48502 * 109.46752 * 209.99721 * 14 12 10 17 17 H 1.48492 * 109.47068 * 329.99304 * 14 12 10 18 18 C 1.39927 * 120.00241 * 3.65001 * 8 6 5 19 19 C 1.38867 * 120.07197 * 68.23597 * 18 8 6 20 20 C 1.38114 * 119.93328 * 179.97438 * 19 18 8 21 21 C 1.38281 * 120.06308 * 359.97438 * 20 19 18 22 22 C 1.38277 * 120.14859 * 0.04258 * 21 20 19 23 23 C 1.38121 * 120.06886 * 359.95589 * 22 21 20 24 24 C 1.46904 * 111.00079 * 150.60712 * 4 2 1 25 25 C 1.53003 * 109.47058 * 292.02282 * 24 4 2 26 26 C 1.52998 * 109.47115 * 52.02156 * 24 4 2 27 27 H 1.09000 * 109.47023 * 305.10878 * 1 2 3 28 28 H 1.08992 * 109.46927 * 65.11023 * 1 2 3 29 29 H 1.09005 * 109.46716 * 185.10976 * 1 2 3 30 30 H 1.08995 * 109.47325 * 239.99648 * 2 1 3 31 31 H 1.08999 * 109.47964 * 59.99980 * 3 2 1 32 32 H 1.09008 * 109.47629 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47084 * 299.99442 * 3 2 1 34 34 H 1.08997 * 109.47305 * 49.99681 * 5 4 2 35 35 H 1.09003 * 109.46958 * 290.00277 * 5 4 2 36 36 H 1.09000 * 109.46810 * 30.00490 * 9 8 6 37 37 H 1.08999 * 109.47012 * 150.00706 * 9 8 6 38 38 H 0.97000 * 119.99731 * 180.02562 * 13 12 10 39 39 H 1.08007 * 120.03709 * 359.70521 * 19 18 8 40 40 H 1.07995 * 119.96908 * 179.97438 * 20 19 18 41 41 H 1.08003 * 119.92203 * 179.97438 * 21 20 19 42 42 H 1.07995 * 119.96934 * 179.97438 * 22 21 20 43 43 H 1.07996 * 120.03273 * 179.97438 * 23 22 21 44 44 H 1.08997 * 109.47190 * 172.02772 * 24 4 2 45 45 H 1.09005 * 109.46674 * 66.89668 * 25 24 4 46 46 H 1.08991 * 109.47014 * 186.89581 * 25 24 4 47 47 H 1.09004 * 109.47272 * 306.90040 * 25 24 4 48 48 H 1.09006 * 109.46808 * 59.99808 * 26 24 4 49 49 H 1.08998 * 109.47451 * 179.97438 * 26 24 4 50 50 H 1.09000 * 109.47152 * 300.00638 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0923 0.2252 2.3443 6 6 2.3583 -0.5610 3.6022 7 8 2.3656 -1.7734 3.5695 8 7 2.5882 0.0832 4.7635 9 6 2.9255 -0.6780 5.9690 10 6 1.6616 -1.0342 6.7082 11 1 0.7028 -0.7243 6.3192 12 6 1.7290 -1.7549 7.8817 13 7 2.8965 -2.1319 8.3557 14 14 0.1622 -2.1971 8.7976 15 1 -0.3417 -3.5072 8.3129 16 1 0.4471 -2.2839 10.2525 17 1 -0.8643 -1.1516 8.5559 18 6 2.5047 1.4789 4.8179 19 6 1.2763 2.1088 4.6677 20 6 1.1970 3.4866 4.7224 21 6 2.3393 4.2386 4.9270 22 6 3.5641 3.6144 5.0766 23 6 3.6500 2.2370 5.0229 24 6 3.3218 -1.3244 0.9479 25 6 3.1459 -2.4785 -0.0411 26 6 4.2850 -0.2913 0.3600 27 1 -0.3633 0.5910 0.8407 28 1 -0.3633 0.4325 -0.9322 29 1 -0.3633 -1.0237 0.0915 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9564 0.8899 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.1472 0.7591 2.4426 35 1 2.8990 0.9408 2.1857 36 1 3.4512 -1.5904 5.6874 37 1 3.5650 -0.0741 6.6128 38 1 2.9439 -2.6392 9.1811 39 1 0.3843 1.5222 4.5039 40 1 0.2420 3.9771 4.6052 41 1 2.2747 5.3158 4.9690 42 1 4.4544 4.2046 5.2359 43 1 4.6070 1.7501 5.1394 44 1 3.7268 -1.7073 1.8846 45 1 2.8579 -2.0818 -1.0148 46 1 4.0852 -3.0235 -0.1342 47 1 2.3692 -3.1521 0.3209 48 1 4.4102 0.5309 1.0647 49 1 5.2513 -0.7600 0.1738 50 1 3.8798 0.0916 -0.5766 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183036460.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:55:06 Heat of formation + Delta-G solvation = -9.353311 kcal Electronic energy + Delta-G solvation = -28578.259681 eV Core-core repulsion = 24991.341554 eV Total energy + Delta-G solvation = -3586.918127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.67635 -40.19568 -39.08406 -36.44874 -34.81285 -34.25706 -32.18667 -31.73262 -30.81148 -29.37006 -29.00895 -27.21377 -27.18180 -24.78948 -23.70278 -23.31582 -22.52628 -20.83847 -19.74410 -18.74173 -18.43377 -17.59591 -17.32424 -16.92460 -16.61880 -16.13325 -16.02051 -15.69008 -15.22204 -14.97326 -14.77368 -14.43828 -14.29557 -14.27565 -14.15940 -13.97973 -13.59541 -13.42674 -13.31772 -13.03169 -13.01302 -12.82206 -12.75788 -12.69082 -12.46621 -12.44974 -12.34978 -12.15576 -12.10466 -11.83102 -11.73186 -11.38983 -11.32314 -10.75709 -10.68180 -10.05671 -9.82746 -9.24453 -9.13643 -8.26178 -6.40669 0.37507 0.50457 1.32394 1.36016 1.45402 1.74149 2.11299 2.36677 2.86009 2.97769 3.03466 3.63311 3.89331 3.99067 4.07025 4.11860 4.13031 4.22211 4.30786 4.32730 4.38997 4.41384 4.50327 4.60588 4.66406 4.71512 4.72544 4.76528 4.80134 4.85189 4.94071 4.98747 5.00994 5.03888 5.09134 5.11277 5.15806 5.28415 5.36671 5.39397 5.43018 5.46998 5.54553 5.62861 5.66817 5.79297 6.00034 6.05640 6.10504 6.30634 6.65320 6.77372 7.23968 7.42252 8.81045 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.010531 B = 0.005089 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.145624 B = 5500.793237 C = 6829.409580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.073 3.927 3 C -0.195 4.195 4 N -0.528 5.528 5 C 0.064 3.936 6 C 0.502 3.498 7 O -0.560 6.560 8 N -0.568 5.568 9 C 0.270 3.730 10 C -0.539 4.539 11 H 0.049 0.951 12 C 0.010 3.990 13 N -0.927 5.927 14 Si 0.966 3.034 15 H -0.279 1.279 16 H -0.271 1.271 17 H -0.264 1.264 18 C 0.127 3.873 19 C -0.137 4.137 20 C -0.101 4.101 21 C -0.119 4.119 22 C -0.102 4.102 23 C -0.142 4.142 24 C 0.068 3.932 25 C -0.129 4.129 26 C -0.179 4.179 27 H 0.044 0.956 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.001 0.999 37 H 0.019 0.981 38 H 0.268 0.732 39 H 0.110 0.890 40 H 0.153 0.847 41 H 0.160 0.840 42 H 0.152 0.848 43 H 0.111 0.889 44 H 0.049 0.951 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.043 0.957 48 H 0.047 0.953 49 H 0.065 0.935 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.600 15.028 -17.533 23.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.034 4.034 3 C -0.253 4.253 4 N -0.252 5.252 5 C -0.067 4.067 6 C 0.291 3.709 7 O -0.438 6.438 8 N -0.296 5.296 9 C 0.150 3.850 10 C -0.577 4.577 11 H 0.067 0.933 12 C -0.189 4.189 13 N -0.567 5.567 14 Si 0.790 3.210 15 H -0.204 1.204 16 H -0.196 1.196 17 H -0.188 1.188 18 C 0.037 3.963 19 C -0.157 4.157 20 C -0.120 4.120 21 C -0.137 4.137 22 C -0.121 4.121 23 C -0.162 4.162 24 C -0.040 4.040 25 C -0.187 4.187 26 C -0.238 4.238 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.124 0.876 35 H 0.092 0.908 36 H 0.019 0.981 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.128 0.872 40 H 0.171 0.829 41 H 0.178 0.822 42 H 0.170 0.830 43 H 0.129 0.871 44 H 0.067 0.933 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.062 0.938 48 H 0.066 0.934 49 H 0.084 0.916 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.842 13.862 -17.289 22.176 hybrid contribution 0.103 -0.524 1.109 1.231 sum -0.739 13.338 -16.180 20.982 Atomic orbital electron populations 1.21790 0.94173 1.01602 1.01963 1.21865 0.96086 0.93514 0.91952 1.22865 1.02639 0.96622 1.03158 1.62003 1.27503 1.31560 1.04177 1.21845 1.03150 0.93727 0.87971 1.21357 0.75991 0.88244 0.85308 1.90632 1.51004 1.15995 1.86174 1.45841 1.68444 1.05185 1.10179 1.18760 0.95372 0.90053 0.80857 1.21585 0.93163 1.35380 1.07589 0.93287 1.25826 0.99934 0.95153 0.98004 1.70046 1.25695 1.38698 1.22260 0.85433 0.79114 0.78653 0.77760 1.20444 1.19622 1.18807 1.18007 0.94546 0.82109 1.01662 1.21388 0.95537 0.96338 1.02451 1.21337 1.00396 0.91799 0.98434 1.21545 0.91624 1.01513 0.99017 1.21329 0.99692 0.92552 0.98481 1.21389 0.97041 0.95431 1.02345 1.21753 0.88056 0.95425 0.98801 1.21716 1.01665 0.97019 0.98295 1.22683 1.00285 0.99134 1.01663 0.93684 0.90094 0.93458 0.88737 0.92698 0.91043 0.90217 0.87572 0.90788 0.98064 0.96316 0.92317 0.87235 0.82918 0.82217 0.82999 0.87067 0.93256 0.90781 0.91698 0.93825 0.93427 0.91591 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.38 71.98 0.68 -2.16 16 2 C 0.07 1.56 2.23 44.91 0.10 1.67 16 3 C -0.19 -3.41 7.53 71.98 0.54 -2.87 16 4 N -0.53 -15.95 4.02 -850.42 -3.41 -19.37 16 5 C 0.06 2.09 2.60 85.56 0.22 2.32 16 6 C 0.50 22.71 7.01 87.66 0.61 23.32 16 7 O -0.56 -30.56 14.37 -3.04 -0.04 -30.60 16 8 N -0.57 -26.39 2.50 -635.31 -1.59 -27.98 16 9 C 0.27 15.41 5.08 85.63 0.44 15.84 16 10 C -0.54 -32.63 9.39 25.60 0.24 -32.39 16 11 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 12 C 0.01 0.59 5.46 84.65 0.46 1.05 16 13 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 14 Si 0.97 46.63 29.54 68.60 2.03 48.66 16 15 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 17 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 18 C 0.13 4.77 4.35 38.15 0.17 4.93 16 19 C -0.14 -4.39 8.55 22.39 0.19 -4.20 16 20 C -0.10 -2.33 10.04 22.25 0.22 -2.11 16 21 C -0.12 -2.37 10.04 22.29 0.22 -2.14 16 22 C -0.10 -2.37 10.04 22.25 0.22 -2.15 16 23 C -0.14 -4.57 9.70 22.39 0.22 -4.35 16 24 C 0.07 2.02 2.52 44.91 0.11 2.13 16 25 C -0.13 -3.29 9.08 71.98 0.65 -2.64 16 26 C -0.18 -4.01 7.36 71.98 0.53 -3.48 16 27 H 0.04 0.99 7.49 -2.39 -0.02 0.97 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.09 1.78 5.54 -2.39 -0.01 1.77 16 31 H 0.05 1.05 6.35 -2.39 -0.02 1.04 16 32 H 0.07 1.25 4.37 -2.38 -0.01 1.23 16 33 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.11 3.26 5.82 -2.39 -0.01 3.25 16 35 H 0.07 2.20 5.26 -2.39 -0.01 2.19 16 36 H 0.00 0.08 7.47 -2.39 -0.02 0.07 16 37 H 0.02 1.10 7.87 -2.39 -0.02 1.08 16 38 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 39 H 0.11 3.69 7.97 -2.91 -0.02 3.67 16 40 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 41 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 42 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 43 H 0.11 3.71 8.06 -2.91 -0.02 3.68 16 44 H 0.05 1.94 6.00 -2.39 -0.01 1.93 16 45 H 0.07 1.47 6.57 -2.38 -0.02 1.45 16 46 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 48 H 0.05 1.13 6.05 -2.38 -0.01 1.11 16 49 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.09 1.53 5.38 -2.39 -0.01 1.52 16 Total: -1.00 -76.69 384.75 4.01 -72.68 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.92 Total: 21.24 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 5.83 Total: -7.23 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -4.72 Total: -104.74 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.04 Total: -30.60 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -76.69 4.01 -72.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183036460.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.325 kcal (2) G-P(sol) polarization free energy of solvation -76.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds