Wall clock time and date at job start Fri Apr 10 2020 23:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46963 * 2 1 4 4 H 1.08999 * 109.47433 * 54.71764 * 3 2 1 5 5 C 1.50698 * 109.47228 * 174.72177 * 3 2 1 6 6 H 1.07997 * 120.00510 * 120.00084 * 5 3 2 7 7 C 1.37884 * 119.99833 * 299.99639 * 5 3 2 8 8 N 1.31509 * 119.99959 * 179.97438 * 7 5 3 9 9 Si 1.86806 * 119.99631 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.46992 * 90.00179 * 9 7 5 11 11 H 1.48499 * 109.46872 * 209.99683 * 9 7 5 12 12 H 1.48499 * 109.47304 * 329.99807 * 9 7 5 13 13 N 1.46900 * 109.46897 * 294.71952 * 3 2 1 14 14 C 1.46902 * 111.00097 * 153.53657 * 13 3 2 15 15 H 1.09007 * 109.47297 * 40.21128 * 14 13 3 16 16 C 1.52999 * 109.47110 * 280.21474 * 14 13 3 17 17 C 1.53000 * 109.47521 * 160.21277 * 14 13 3 18 18 C 1.50697 * 109.47211 * 295.00275 * 17 14 13 19 19 O 1.21298 * 120.00016 * 359.97438 * 18 17 14 20 20 N 1.34775 * 120.00275 * 180.02562 * 18 17 14 21 21 C 1.39925 * 120.00064 * 184.12655 * 20 18 17 22 22 C 1.38896 * 120.07235 * 330.96656 * 21 20 18 23 23 C 1.38085 * 119.92729 * 179.69979 * 22 21 20 24 24 C 1.38301 * 120.07347 * 0.57346 * 23 22 21 25 25 C 1.50706 * 119.92894 * 179.74045 * 24 23 22 26 26 C 1.38260 * 120.14025 * 359.72469 * 24 23 22 27 27 C 1.38127 * 120.06907 * 359.97438 * 26 24 23 28 28 C 1.50698 * 120.03646 * 180.02562 * 27 26 24 29 29 H 1.09003 * 109.47096 * 186.22488 * 1 2 3 30 30 H 1.08992 * 109.47443 * 306.22532 * 1 2 3 31 31 H 1.08995 * 109.47184 * 66.23248 * 1 2 3 32 32 H 1.09006 * 109.47161 * 239.99679 * 2 1 3 33 33 H 1.09002 * 109.46803 * 119.99541 * 2 1 3 34 34 H 0.97002 * 119.99864 * 180.02562 * 8 7 5 35 35 H 1.00895 * 111.00399 * 29.57799 * 13 3 2 36 36 H 1.08998 * 109.47037 * 305.28732 * 16 14 13 37 37 H 1.09000 * 109.46805 * 65.28450 * 16 14 13 38 38 H 1.09001 * 109.47165 * 185.28824 * 16 14 13 39 39 H 1.09004 * 109.47137 * 54.99707 * 17 14 13 40 40 H 1.08993 * 109.47423 * 175.00320 * 17 14 13 41 41 H 0.96996 * 120.00082 * 4.12294 * 20 18 17 42 42 H 1.08000 * 120.03118 * 359.97438 * 22 21 20 43 43 H 1.08002 * 119.96205 * 180.27676 * 23 22 21 44 44 H 1.09002 * 109.47504 * 269.98283 * 25 24 23 45 45 H 1.08994 * 109.47142 * 29.98337 * 25 24 23 46 46 H 1.09001 * 109.46951 * 149.98213 * 25 24 23 47 47 H 1.08003 * 119.96239 * 179.97438 * 26 24 23 48 48 H 1.09000 * 109.47432 * 270.02265 * 28 27 26 49 49 H 1.09001 * 109.47178 * 30.01518 * 28 27 26 50 50 H 1.09003 * 109.47913 * 150.01849 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6015 1.9829 0.8389 5 6 3.5413 1.4446 0.1307 6 1 4.1501 1.8879 -0.6433 7 6 4.1376 0.8805 1.2386 8 7 5.4477 0.8818 1.3524 9 14 3.0844 0.1131 2.5771 10 1 2.8651 -1.3234 2.2718 11 1 3.7756 0.2412 3.8852 12 1 1.7754 0.8117 2.6385 13 7 1.6571 2.0971 -1.2581 14 6 1.5436 3.5511 -1.0817 15 1 2.3519 3.9036 -0.4408 16 6 0.1977 3.8828 -0.4341 17 6 1.6369 4.2392 -2.4451 18 6 3.0080 4.0141 -3.0286 19 8 3.8300 3.3675 -2.4141 20 7 3.3214 4.5323 -4.2326 21 6 4.5631 4.2518 -4.8133 22 6 5.6653 3.9932 -4.0085 23 6 6.8879 3.7106 -4.5848 24 6 7.0185 3.6966 -5.9615 25 6 8.3558 3.3936 -6.5869 26 6 5.9248 3.9597 -6.7654 27 6 4.6976 4.2370 -6.1952 28 6 3.5058 4.5231 -7.0720 29 1 -0.3633 -1.0216 0.1114 30 1 -0.3634 0.6073 0.8289 31 1 -0.3633 0.4142 -0.9405 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 5.8673 0.4847 2.1317 35 1 0.7996 1.7090 -1.6214 36 1 -0.6074 3.4487 -1.0268 37 1 0.1688 3.4712 0.5748 38 1 0.0731 4.9647 -0.3889 39 1 0.8844 3.8225 -3.1146 40 1 1.4643 5.3086 -2.3249 41 1 2.6860 5.0996 -4.6967 42 1 5.5650 4.0087 -2.9333 43 1 7.7442 3.5050 -3.9596 44 1 8.9105 4.3215 -6.7261 45 1 8.9197 2.7277 -5.9339 46 1 8.2043 2.9124 -7.5532 47 1 6.0301 3.9484 -7.8402 48 1 3.4504 5.5931 -7.2720 49 1 3.6089 3.9826 -8.0130 50 1 2.5961 4.2005 -6.5656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184092369.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:55:33 Heat of formation + Delta-G solvation = -36.724064 kcal Electronic energy + Delta-G solvation = -27559.594373 eV Core-core repulsion = 23971.489362 eV Total energy + Delta-G solvation = -3588.105011 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.53083 -39.80681 -38.56511 -36.05857 -35.41284 -33.91860 -33.55611 -32.42110 -30.78909 -29.12261 -28.39045 -28.03511 -26.72217 -24.38513 -23.67941 -22.35429 -21.63333 -21.26189 -20.92642 -18.70083 -18.66879 -17.76269 -17.15206 -16.52103 -16.25602 -16.08795 -15.95627 -15.34846 -15.06848 -14.88623 -14.73492 -14.51009 -14.42385 -14.19822 -14.06038 -13.95187 -13.60883 -13.52993 -13.35007 -13.20468 -12.95836 -12.83022 -12.78886 -12.52863 -12.47443 -12.26284 -12.23050 -12.08078 -11.95979 -11.69051 -11.64776 -11.14987 -11.08189 -11.06544 -10.60756 -10.37546 -9.60458 -8.79772 -8.75496 -8.15521 -6.14053 0.38623 0.50921 1.25841 1.30739 1.41037 1.93421 2.25777 2.36127 2.88876 3.15173 3.55570 3.86049 3.97859 4.00827 4.02951 4.14472 4.28366 4.36249 4.40825 4.44604 4.45911 4.51004 4.52709 4.66784 4.74203 4.75961 4.78901 4.84320 4.86136 4.89743 4.94798 5.01322 5.08722 5.10284 5.13159 5.13745 5.22486 5.31886 5.34637 5.37636 5.46919 5.54685 5.56764 5.70452 5.76881 5.81803 6.22003 6.28050 6.65840 6.70911 7.05750 7.15251 7.48969 7.58293 9.02854 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.013674 B = 0.003851 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.145790 B = 7269.927071 C = 8620.251001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.203 3.797 4 H -0.007 1.007 5 C -0.483 4.483 6 H 0.050 0.950 7 C -0.006 4.006 8 N -0.962 5.962 9 Si 0.946 3.054 10 H -0.271 1.271 11 H -0.305 1.305 12 H -0.247 1.247 13 N -0.669 5.669 14 C 0.097 3.903 15 H 0.040 0.960 16 C -0.170 4.170 17 C -0.111 4.111 18 C 0.491 3.509 19 O -0.520 6.520 20 N -0.666 5.666 21 C 0.135 3.865 22 C -0.152 4.152 23 C -0.129 4.129 24 C -0.112 4.112 25 C -0.107 4.107 26 C -0.106 4.106 27 C -0.117 4.117 28 C -0.108 4.108 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.033 0.967 34 H 0.257 0.743 35 H 0.330 0.670 36 H 0.078 0.922 37 H 0.036 0.964 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.423 0.577 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.083 0.917 47 H 0.156 0.844 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.622 10.490 -18.682 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.094 3.906 4 H 0.010 0.990 5 C -0.522 4.522 6 H 0.069 0.931 7 C -0.199 4.199 8 N -0.606 5.606 9 Si 0.775 3.225 10 H -0.197 1.197 11 H -0.233 1.233 12 H -0.171 1.171 13 N -0.301 5.301 14 C -0.014 4.014 15 H 0.058 0.942 16 C -0.229 4.229 17 C -0.151 4.151 18 C 0.280 3.720 19 O -0.393 6.393 20 N -0.314 5.314 21 C 0.040 3.960 22 C -0.173 4.173 23 C -0.148 4.148 24 C -0.113 4.113 25 C -0.163 4.163 26 C -0.124 4.124 27 C -0.119 4.119 28 C -0.164 4.164 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.150 0.850 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.099 0.901 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.262 0.738 42 H 0.124 0.876 43 H 0.130 0.870 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.102 0.898 47 H 0.173 0.827 48 H 0.108 0.892 49 H 0.102 0.898 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.355 9.991 -18.316 22.865 hybrid contribution -0.310 -0.431 1.860 1.934 sum -9.665 9.561 -16.456 21.345 Atomic orbital electron populations 1.21810 0.93934 1.02210 1.02205 1.22020 0.96660 0.98644 1.00170 1.19273 0.93253 0.90456 0.87616 0.98962 1.21704 0.92412 1.33785 1.04325 0.93135 1.25876 0.95777 0.97634 1.00662 1.70113 1.11044 1.48946 1.30457 0.85899 0.79584 0.79355 0.77711 1.19743 1.23322 1.17060 1.60329 1.37088 1.02870 1.29765 1.21235 0.96532 0.88641 0.95032 0.94153 1.22422 0.96871 1.03146 1.00449 1.21709 0.92534 1.03691 0.97142 1.21643 0.91508 0.78285 0.80588 1.90909 1.51017 1.37718 1.59647 1.43522 1.15956 1.51235 1.20650 1.17764 0.85312 1.00914 0.92040 1.21418 0.92987 1.02520 1.00374 1.21057 0.96804 1.01307 0.95624 1.20179 0.97779 1.00756 0.92557 1.20773 0.92274 1.02287 1.00995 1.21063 0.90886 0.99838 1.00639 1.20019 0.97868 1.02954 0.91103 1.20772 0.93706 1.03288 0.98632 0.91674 0.93147 0.90752 0.92750 0.94832 0.93390 0.85016 0.90317 0.94439 0.90125 0.85945 0.85578 0.73794 0.87604 0.86978 0.90094 0.92251 0.89831 0.82691 0.89216 0.89766 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 9.63 71.98 0.69 -3.78 16 2 C -0.14 -5.91 5.01 30.59 0.15 -5.76 16 3 C 0.20 9.80 1.43 44.17 0.06 9.86 16 4 H -0.01 -0.34 5.85 -2.39 -0.01 -0.36 16 5 C -0.48 -30.10 9.14 25.60 0.23 -29.86 16 6 H 0.05 3.65 6.38 -2.91 -0.02 3.63 16 7 C -0.01 -0.35 5.45 84.66 0.46 0.11 16 8 N -0.96 -66.24 13.96 21.45 0.30 -65.94 16 9 Si 0.95 48.59 24.41 68.60 1.67 50.26 16 10 H -0.27 -13.29 6.83 99.48 0.68 -12.61 16 11 H -0.30 -15.71 7.11 99.48 0.71 -15.01 16 12 H -0.25 -11.55 6.53 99.48 0.65 -10.90 16 13 N -0.67 -26.73 5.18 -473.31 -2.45 -29.18 16 14 C 0.10 3.26 1.98 44.91 0.09 3.35 16 15 H 0.04 1.80 7.56 -2.38 -0.02 1.78 16 16 C -0.17 -4.23 9.14 71.98 0.66 -3.57 16 17 C -0.11 -2.71 5.38 29.85 0.16 -2.55 16 18 C 0.49 16.71 7.56 87.66 0.66 17.37 16 19 O -0.52 -25.41 10.84 -3.08 -0.03 -25.45 16 20 N -0.67 -17.60 4.89 -303.49 -1.48 -19.08 16 21 C 0.13 4.22 6.38 38.15 0.24 4.47 16 22 C -0.15 -5.98 8.75 22.39 0.20 -5.78 16 23 C -0.13 -4.47 9.69 22.25 0.22 -4.26 16 24 C -0.11 -3.00 5.88 -19.84 -0.12 -3.12 16 25 C -0.11 -2.09 10.01 71.24 0.71 -1.38 16 26 C -0.11 -2.42 9.35 22.25 0.21 -2.21 16 27 C -0.12 -2.79 5.90 -19.74 -0.12 -2.90 16 28 C -0.11 -1.53 9.45 71.24 0.67 -0.85 16 29 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.93 6.66 -2.39 -0.02 1.91 16 32 H 0.05 2.44 8.14 -2.38 -0.02 2.42 16 33 H 0.03 1.57 3.21 -2.39 -0.01 1.56 16 34 H 0.26 16.64 8.31 -92.71 -0.77 15.87 16 35 H 0.33 10.88 6.35 -89.70 -0.57 10.31 16 36 H 0.08 1.53 8.06 -2.39 -0.02 1.51 16 37 H 0.04 1.10 7.17 -2.39 -0.02 1.08 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.42 6.98 7.57 -92.71 -0.70 6.28 16 42 H 0.11 5.11 5.78 -2.91 -0.02 5.09 16 43 H 0.11 3.86 8.06 -2.91 -0.02 3.84 16 44 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.06 1.23 8.08 -2.39 -0.02 1.21 16 46 H 0.08 1.28 8.08 -2.39 -0.02 1.26 16 47 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 48 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 50 H 0.07 0.93 7.06 -2.39 -0.02 0.91 16 Total: -1.00 -88.72 385.34 2.79 -85.93 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: -0.41 Total: 34.32 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: 5.19 Total: -30.87 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -3.63 Total: -114.20 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.03 Total: -25.45 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 1.67 Total: 50.26 kcal Total: -88.72 2.79 -85.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184092369.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.205 kcal (2) G-P(sol) polarization free energy of solvation -88.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds