Wall clock time and date at job start Fri Apr 10 2020 23:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.46929 * 2 1 4 4 H 1.08997 * 109.47400 * 55.81432 * 3 2 1 5 5 C 1.50707 * 109.47367 * 175.81366 * 3 2 1 6 6 H 1.07990 * 120.00326 * 119.99883 * 5 3 2 7 7 C 1.37878 * 119.99323 * 300.00173 * 5 3 2 8 8 N 1.31516 * 120.00471 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99848 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46951 * 60.00162 * 9 7 5 11 11 H 1.48498 * 109.47162 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47261 * 300.00565 * 9 7 5 13 13 N 1.46902 * 109.47529 * 295.80894 * 3 2 1 14 14 C 1.46954 * 111.00134 * 171.75517 * 13 3 2 15 15 C 1.53056 * 109.36587 * 183.19114 * 14 13 3 16 16 N 1.46955 * 109.37950 * 301.59407 * 15 14 13 17 17 C 1.46899 * 110.99670 * 183.19815 * 16 15 14 18 18 C 1.50706 * 109.47317 * 73.90280 * 17 16 15 19 19 C 1.38237 * 119.99969 * 269.72725 * 18 17 16 20 20 C 1.38229 * 120.00062 * 179.76633 * 19 18 17 21 21 C 1.38235 * 119.99736 * 0.48183 * 20 19 18 22 22 C 1.38240 * 120.00369 * 359.79415 * 21 20 19 23 23 C 1.38232 * 119.99708 * 359.95324 * 22 21 20 24 24 C 1.46999 * 110.86052 * 59.30667 * 16 15 14 25 25 H 1.08998 * 109.48407 * 60.66632 * 24 16 15 26 26 C 1.53000 * 109.48203 * 180.72015 * 24 16 15 27 27 O 1.42908 * 109.46760 * 63.48081 * 26 24 16 28 28 C 1.46949 * 111.00217 * 295.56214 * 13 3 2 29 29 H 1.08995 * 109.47530 * 305.01558 * 1 2 3 30 30 H 1.08995 * 109.47149 * 65.01942 * 1 2 3 31 31 H 1.08999 * 109.47331 * 185.01578 * 1 2 3 32 32 H 1.08998 * 109.46807 * 240.00393 * 2 1 3 33 33 H 1.08998 * 109.47338 * 120.00455 * 2 1 3 34 34 H 0.96998 * 120.00255 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.48855 * 63.22372 * 14 13 3 36 36 H 1.08994 * 109.49245 * 303.15971 * 14 13 3 37 37 H 1.09004 * 109.48306 * 61.56607 * 15 14 13 38 38 H 1.08993 * 109.49113 * 181.61160 * 15 14 13 39 39 H 1.09002 * 109.47444 * 193.90206 * 17 16 15 40 40 H 1.08995 * 109.47371 * 313.90262 * 17 16 15 41 41 H 1.08000 * 119.99614 * 359.97438 * 19 18 17 42 42 H 1.07999 * 120.00325 * 180.25224 * 20 19 18 43 43 H 1.08003 * 119.99942 * 179.76279 * 21 20 19 44 44 H 1.08000 * 120.00211 * 179.97438 * 22 21 20 45 45 H 1.07996 * 120.00204 * 179.97438 * 23 22 21 46 46 H 1.09001 * 109.47104 * 183.46925 * 26 24 16 47 47 H 1.08990 * 109.47443 * 303.47851 * 26 24 16 48 48 H 0.96698 * 113.99710 * 179.97438 * 27 26 24 49 49 H 1.09006 * 109.48880 * 296.77423 * 28 13 3 50 50 H 1.08996 * 109.49015 * 56.81601 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6167 1.9775 0.8501 5 6 3.5434 1.4438 0.1037 6 1 4.1382 1.8921 -0.6782 7 6 4.1594 0.8727 1.1971 8 7 3.4350 0.3272 2.1496 9 14 6.0230 0.8737 1.3254 10 1 6.5185 2.2737 1.3252 11 1 6.4328 0.2033 2.5856 12 1 6.5994 0.1445 0.1673 13 7 1.6347 2.1052 -1.2468 14 6 1.9348 3.5430 -1.2007 15 6 1.4267 4.2090 -2.4816 16 7 2.0649 3.5781 -3.6454 17 6 1.6595 4.2412 -4.8919 18 6 2.3513 5.5758 -4.9989 19 6 1.7525 6.7084 -4.4795 20 6 2.3893 7.9317 -4.5734 21 6 3.6202 8.0242 -5.1955 22 6 4.2165 6.8926 -5.7200 23 6 3.5821 5.6684 -5.6215 24 6 1.7647 2.1398 -3.6913 25 1 0.6874 1.9957 -3.7734 26 6 2.4577 1.5122 -4.9024 27 8 3.8743 1.6292 -4.7541 28 6 2.2728 1.4739 -2.4103 29 1 -0.3634 0.5896 0.8416 30 1 -0.3633 0.4340 -0.9315 31 1 -0.3634 -1.0237 0.0898 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8684 -0.0749 2.9186 35 1 3.0121 3.6871 -1.1186 36 1 1.4411 3.9901 -0.3379 37 1 0.3455 4.0883 -2.5499 38 1 1.6737 5.2704 -2.4623 39 1 1.9379 3.6185 -5.7421 40 1 0.5798 4.3909 -4.8894 41 1 0.7888 6.6368 -3.9974 42 1 1.9234 8.8158 -4.1640 43 1 4.1160 8.9806 -5.2722 44 1 5.1780 6.9649 -6.2064 45 1 4.0476 4.7844 -6.0316 46 1 2.1855 0.4590 -4.9715 47 1 2.1435 2.0290 -5.8090 48 1 4.3790 1.2512 -5.4871 49 1 3.3540 1.5945 -2.3420 50 1 2.0258 0.4125 -2.4292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164866.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:54:10 Heat of formation + Delta-G solvation = -25.852947 kcal Electronic energy + Delta-G solvation = -28354.416972 eV Core-core repulsion = 24766.783368 eV Total energy + Delta-G solvation = -3587.633604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.92928 -39.75253 -37.95890 -36.83482 -34.67006 -33.31517 -32.65766 -31.82534 -31.56501 -29.16707 -27.62231 -26.94470 -25.27741 -24.42897 -23.39647 -22.59787 -21.93331 -21.04473 -20.53251 -18.47064 -18.09132 -17.61794 -17.20418 -16.89407 -16.44995 -16.07898 -15.83871 -15.41782 -15.39365 -15.20843 -14.91447 -14.53862 -14.38993 -14.21273 -14.04312 -13.77840 -13.56611 -13.31059 -13.21990 -13.09185 -12.94561 -12.74560 -12.53358 -12.44423 -12.27238 -12.11011 -11.90924 -11.80251 -11.68207 -11.55451 -11.31726 -11.08538 -10.97804 -10.64680 -10.41776 -9.72866 -9.59488 -9.14104 -8.88802 -8.02269 -6.23246 0.50438 0.59030 1.35833 1.36110 1.44447 2.40352 2.76572 3.15554 3.22616 3.40439 3.53463 3.88207 4.00096 4.08860 4.13388 4.21770 4.24266 4.36152 4.43328 4.45583 4.54474 4.56202 4.62022 4.69276 4.72103 4.73535 4.76678 4.81935 4.84768 4.91169 4.93224 5.10984 5.17761 5.19663 5.24250 5.26233 5.41332 5.43212 5.51059 5.63596 5.65788 5.68981 5.79279 5.79701 6.04477 6.17076 6.18414 6.23043 6.27570 6.43226 6.67179 6.97075 7.09305 7.46595 8.92390 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.013353 B = 0.004063 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.423324 B = 6890.521562 C = 7407.314532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 C 0.221 3.779 4 H 0.002 0.998 5 C -0.545 4.545 6 H 0.041 0.959 7 C 0.025 3.975 8 N -0.910 5.910 9 Si 0.941 3.059 10 H -0.280 1.280 11 H -0.279 1.279 12 H -0.276 1.276 13 N -0.529 5.529 14 C 0.067 3.933 15 C 0.073 3.927 16 N -0.529 5.529 17 C 0.091 3.909 18 C -0.082 4.082 19 C -0.126 4.126 20 C -0.130 4.130 21 C -0.131 4.131 22 C -0.132 4.132 23 C -0.111 4.111 24 C 0.090 3.910 25 H 0.062 0.938 26 C 0.086 3.914 27 O -0.576 6.576 28 C 0.084 3.916 29 H 0.032 0.968 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.030 0.970 33 H 0.062 0.938 34 H 0.261 0.739 35 H 0.009 0.991 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.049 0.951 41 H 0.125 0.875 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.135 0.865 45 H 0.122 0.878 46 H 0.060 0.940 47 H 0.071 0.929 48 H 0.387 0.613 49 H 0.021 0.979 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.372 9.265 -18.615 21.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.114 3.886 4 H 0.020 0.980 5 C -0.584 4.584 6 H 0.060 0.940 7 C -0.175 4.175 8 N -0.549 5.549 9 Si 0.767 3.233 10 H -0.206 1.206 11 H -0.204 1.204 12 H -0.201 1.201 13 N -0.252 5.252 14 C -0.062 4.062 15 C -0.055 4.055 16 N -0.254 5.254 17 C -0.036 4.036 18 C -0.082 4.082 19 C -0.145 4.145 20 C -0.148 4.148 21 C -0.149 4.149 22 C -0.150 4.150 23 C -0.130 4.130 24 C -0.019 4.019 25 H 0.079 0.921 26 C 0.007 3.993 27 O -0.383 6.383 28 C -0.045 4.045 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.027 0.973 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.067 0.933 41 H 0.143 0.857 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.153 0.847 45 H 0.140 0.860 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.235 0.765 49 H 0.040 0.960 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.556 9.438 -17.866 20.713 hybrid contribution 1.443 -0.439 0.314 1.541 sum -3.113 8.999 -17.552 19.969 Atomic orbital electron populations 1.21533 0.96065 0.99661 1.00686 1.21416 0.94587 0.97962 1.00255 1.19026 0.91516 0.91590 0.86472 0.97995 1.21895 0.94188 1.37119 1.05228 0.94036 1.25519 1.01427 0.95045 0.95498 1.69977 1.36138 1.38908 1.09909 0.85891 0.82073 0.77967 0.77353 1.20604 1.20424 1.20149 1.62626 1.56848 1.02021 1.03725 1.21880 0.97536 0.89739 0.97030 1.22086 0.96146 0.98114 0.89175 1.61993 1.59339 1.01923 1.02171 1.21171 0.97000 0.92512 0.92891 1.19857 0.95622 0.94618 0.98120 1.21257 1.00642 0.92758 0.99804 1.21390 0.95883 0.97967 0.99548 1.21436 0.95840 0.99282 0.98389 1.21412 1.00495 0.92752 1.00361 1.21174 0.94567 0.98004 0.99232 1.21828 0.97394 0.87708 0.94926 0.92074 1.22311 0.81596 0.99208 0.96156 1.86688 1.17735 1.84046 1.49815 1.21744 0.96638 0.97007 0.89069 0.94851 0.92578 0.93533 0.95142 0.91979 0.92937 0.97283 0.92192 0.93913 0.90151 0.88670 0.93282 0.85681 0.84434 0.84315 0.84702 0.85966 0.92219 0.91127 0.76497 0.96027 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.89 9.73 71.98 0.70 -4.19 16 2 C -0.10 -5.03 5.11 30.59 0.16 -4.87 16 3 C 0.22 11.38 1.73 44.17 0.08 11.46 16 4 H 0.00 0.12 8.06 -2.39 -0.02 0.10 16 5 C -0.55 -30.90 7.15 25.60 0.18 -30.72 16 6 H 0.04 2.47 5.80 -2.92 -0.02 2.45 16 7 C 0.02 1.41 5.29 84.65 0.45 1.86 16 8 N -0.91 -53.05 11.30 21.45 0.24 -52.80 16 9 Si 0.94 45.68 29.54 68.60 2.03 47.71 16 10 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 N -0.53 -22.97 4.18 -874.89 -3.66 -26.63 16 14 C 0.07 2.79 5.36 86.31 0.46 3.25 16 15 C 0.07 2.35 5.37 86.31 0.46 2.81 16 16 N -0.53 -16.10 4.39 -874.91 -3.84 -19.94 16 17 C 0.09 2.13 4.98 85.56 0.43 2.56 16 18 C -0.08 -1.96 5.09 -19.86 -0.10 -2.06 16 19 C -0.13 -2.82 8.22 22.27 0.18 -2.63 16 20 C -0.13 -2.62 10.05 22.27 0.22 -2.39 16 21 C -0.13 -2.57 10.05 22.27 0.22 -2.34 16 22 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16 23 C -0.11 -2.62 9.70 22.27 0.22 -2.40 16 24 C 0.09 2.76 2.35 44.91 0.11 2.86 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 C 0.09 2.05 6.40 71.98 0.46 2.51 16 27 O -0.58 -16.06 12.74 -148.98 -1.90 -17.95 16 28 C 0.08 3.41 4.09 86.31 0.35 3.76 16 29 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 2.10 7.87 -2.39 -0.02 2.08 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.03 1.45 6.25 -2.39 -0.01 1.43 16 33 H 0.06 3.40 5.97 -2.39 -0.01 3.39 16 34 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 35 H 0.01 0.43 7.10 -2.39 -0.02 0.41 16 36 H 0.06 2.48 8.09 -2.39 -0.02 2.46 16 37 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.08 2.43 6.17 -2.39 -0.01 2.42 16 39 H 0.10 1.96 5.33 -2.39 -0.01 1.94 16 40 H 0.05 1.05 7.97 -2.39 -0.02 1.03 16 41 H 0.13 2.50 7.87 -2.91 -0.02 2.48 16 42 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 43 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 44 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 45 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 46 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.07 1.29 5.83 -2.39 -0.01 1.27 16 48 H 0.39 6.69 9.12 -74.06 -0.68 6.01 16 49 H 0.02 1.05 5.74 -2.38 -0.01 1.04 16 50 H 0.06 2.50 6.19 -2.39 -0.01 2.49 16 Total: -1.00 -67.38 378.78 -2.07 -69.45 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.25 Total: 23.27 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 4.80 Total: -23.10 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -7.25 Total: -99.37 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -1.90 Total: -17.95 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -67.38 -2.07 -69.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164866.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.601 kcal (2) G-P(sol) polarization free energy of solvation -67.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds