Wall clock time and date at job start Fri Apr 10 2020 23:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47387 * 2 1 4 4 H 1.08993 * 109.47059 * 303.06838 * 3 2 1 5 5 C 1.50698 * 109.47191 * 183.06274 * 3 2 1 6 6 H 1.07997 * 120.00056 * 239.99910 * 5 3 2 7 7 C 1.37871 * 119.99896 * 60.00290 * 5 3 2 8 8 N 1.31513 * 120.00216 * 359.97438 * 7 5 3 9 9 Si 1.86810 * 120.00026 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46825 * 59.99878 * 9 7 5 11 11 H 1.48501 * 109.47124 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47066 * 299.99803 * 9 7 5 13 13 N 1.46907 * 109.46738 * 63.06458 * 3 2 1 14 14 C 1.46958 * 110.99367 * 189.88295 * 13 3 2 15 15 C 1.53051 * 109.36205 * 176.81167 * 14 13 3 16 16 N 1.46957 * 109.36547 * 58.40123 * 15 14 13 17 17 C 1.46898 * 111.00279 * 176.81584 * 16 15 14 18 18 C 1.50702 * 109.46875 * 295.10072 * 17 16 15 19 19 C 1.38231 * 120.00381 * 269.72858 * 18 17 16 20 20 C 1.38232 * 120.00361 * 179.80895 * 19 18 17 21 21 C 1.38239 * 119.99640 * 0.39693 * 20 19 18 22 22 C 1.38226 * 120.00062 * 359.85696 * 21 20 19 23 23 C 1.38239 * 119.99614 * 90.00025 * 18 17 16 24 24 C 1.46962 * 110.87863 * 300.68014 * 16 15 14 25 25 H 1.08994 * 109.49058 * 299.35447 * 24 16 15 26 26 C 1.52998 * 109.50463 * 179.29507 * 24 16 15 27 27 O 1.42898 * 109.47714 * 296.38941 * 26 24 16 28 28 C 1.46953 * 110.99973 * 66.08400 * 13 3 2 29 29 H 1.09004 * 109.47153 * 184.37601 * 1 2 3 30 30 H 1.08996 * 109.46892 * 304.37493 * 1 2 3 31 31 H 1.08995 * 109.47141 * 64.37797 * 1 2 3 32 32 H 1.09009 * 109.47250 * 239.99674 * 2 1 3 33 33 H 1.09003 * 109.47142 * 120.00386 * 2 1 3 34 34 H 0.97009 * 119.99918 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.49225 * 296.77552 * 14 13 3 36 36 H 1.08998 * 109.49151 * 56.84719 * 14 13 3 37 37 H 1.08995 * 109.49430 * 178.36705 * 15 14 13 38 38 H 1.09004 * 109.48804 * 298.41437 * 15 14 13 39 39 H 1.09003 * 109.47435 * 55.10238 * 17 16 15 40 40 H 1.09001 * 109.47100 * 175.10161 * 17 16 15 41 41 H 1.08006 * 119.99947 * 359.97438 * 19 18 17 42 42 H 1.08002 * 120.00551 * 180.22779 * 20 19 18 43 43 H 1.07998 * 119.99456 * 179.83319 * 21 20 19 44 44 H 1.08007 * 119.99898 * 179.97438 * 22 21 20 45 45 H 1.07997 * 120.00439 * 359.97438 * 23 18 17 46 46 H 1.09004 * 109.47252 * 56.39083 * 26 24 16 47 47 H 1.09002 * 109.46772 * 176.38607 * 26 24 16 48 48 H 0.96697 * 114.00444 * 180.02562 * 27 26 24 49 49 H 1.09008 * 109.48717 * 63.22135 * 28 13 3 50 50 H 1.08990 * 109.49039 * 303.15253 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6325 1.9719 -0.8612 5 6 3.5451 1.4431 -0.0759 6 1 4.1254 1.8964 0.7140 7 6 4.1812 0.8649 -1.1539 8 7 3.4745 0.3124 -2.1156 9 14 6.0469 0.8663 -1.2484 10 1 6.6024 0.1454 -0.0750 11 1 6.4798 0.1876 -2.4962 12 1 6.5414 2.2665 -1.2487 13 7 1.6117 2.1132 1.2348 14 6 1.8775 3.5570 1.1691 15 6 1.3462 4.2291 2.4374 16 7 1.9928 3.6304 3.6135 17 6 1.5645 4.3011 4.8482 18 6 2.0420 5.7304 4.8351 19 6 3.2759 6.0519 5.3689 20 6 3.7156 7.3624 5.3532 21 6 2.9178 8.3526 4.8111 22 6 1.6817 8.0320 4.2820 23 6 1.2436 6.7209 4.2942 24 6 1.7270 2.1865 3.6791 25 1 0.6531 2.0176 3.7575 26 6 2.4278 1.5932 4.9030 27 8 3.8421 1.7389 4.7595 28 6 2.2583 1.5145 2.4108 29 1 -0.3634 -1.0247 0.0784 30 1 -0.3633 0.5802 0.8482 31 1 -0.3633 0.4444 -0.9266 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.9221 -0.0947 -2.8739 35 1 2.9515 3.7260 1.0907 36 1 1.3780 3.9795 0.2973 37 1 1.5680 5.2957 2.4041 38 1 0.2678 4.0837 2.5015 39 1 0.4766 4.2821 4.9136 40 1 1.9892 3.7841 5.7087 41 1 3.8976 5.2788 5.7958 42 1 4.6812 7.6130 5.7670 43 1 3.2602 9.3768 4.8013 44 1 1.0583 8.8057 3.8588 45 1 0.2779 6.4704 3.8807 46 1 2.0978 2.1170 5.8001 47 1 2.1782 0.5355 4.9873 48 1 4.3514 1.3835 5.5006 49 1 3.3367 1.6603 2.3465 50 1 2.0365 0.4479 2.4442 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164870.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:54:17 Heat of formation + Delta-G solvation = -26.200029 kcal Electronic energy + Delta-G solvation = -28351.466241 eV Core-core repulsion = 24763.817586 eV Total energy + Delta-G solvation = -3587.648655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.96107 -39.75919 -37.95690 -36.84109 -34.67224 -33.31068 -32.68116 -31.82624 -31.53867 -29.17759 -27.62775 -26.94760 -25.28408 -24.42134 -23.41375 -22.59670 -21.95018 -21.02942 -20.53314 -18.46766 -18.09823 -17.61921 -17.20219 -16.85071 -16.45620 -16.10051 -15.85831 -15.42995 -15.39263 -15.19801 -14.92157 -14.54487 -14.39597 -14.21092 -14.05240 -13.77075 -13.60876 -13.29606 -13.21922 -13.08226 -12.96713 -12.74399 -12.52916 -12.44014 -12.28172 -12.12842 -11.90046 -11.80438 -11.67445 -11.56436 -11.31741 -11.08303 -10.97566 -10.66513 -10.41889 -9.73424 -9.62148 -9.13360 -8.88769 -8.02287 -6.23141 0.48737 0.57782 1.36137 1.36310 1.44686 2.40512 2.76170 3.15723 3.21499 3.40308 3.52981 3.86534 3.99693 4.08458 4.14149 4.21472 4.24652 4.36003 4.42314 4.46248 4.54544 4.56245 4.62533 4.68657 4.71418 4.74176 4.76936 4.80432 4.84139 4.91456 4.92997 5.11029 5.16758 5.18298 5.23499 5.25754 5.41130 5.43833 5.52057 5.62455 5.66120 5.68198 5.78255 5.80050 6.04671 6.15824 6.17973 6.22740 6.26778 6.43025 6.67027 6.97128 7.08940 7.46733 8.92538 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.013352 B = 0.004021 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.525817 B = 6961.253401 C = 7375.084717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C 0.221 3.779 4 H 0.002 0.998 5 C -0.546 4.546 6 H 0.042 0.958 7 C 0.025 3.975 8 N -0.910 5.910 9 Si 0.941 3.059 10 H -0.276 1.276 11 H -0.279 1.279 12 H -0.280 1.280 13 N -0.528 5.528 14 C 0.067 3.933 15 C 0.073 3.927 16 N -0.529 5.529 17 C 0.093 3.907 18 C -0.085 4.085 19 C -0.112 4.112 20 C -0.132 4.132 21 C -0.130 4.130 22 C -0.129 4.129 23 C -0.125 4.125 24 C 0.090 3.910 25 H 0.061 0.939 26 C 0.086 3.914 27 O -0.577 6.577 28 C 0.084 3.916 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.032 0.968 32 H 0.061 0.939 33 H 0.029 0.971 34 H 0.261 0.739 35 H 0.009 0.991 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.047 0.953 40 H 0.094 0.906 41 H 0.122 0.878 42 H 0.135 0.865 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.125 0.875 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.387 0.613 49 H 0.023 0.977 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.123 9.850 18.145 21.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 C 0.114 3.886 4 H 0.020 0.980 5 C -0.585 4.585 6 H 0.061 0.939 7 C -0.175 4.175 8 N -0.550 5.550 9 Si 0.768 3.232 10 H -0.201 1.201 11 H -0.205 1.205 12 H -0.206 1.206 13 N -0.252 5.252 14 C -0.062 4.062 15 C -0.055 4.055 16 N -0.254 5.254 17 C -0.033 4.033 18 C -0.085 4.085 19 C -0.131 4.131 20 C -0.150 4.150 21 C -0.148 4.148 22 C -0.147 4.147 23 C -0.143 4.143 24 C -0.019 4.019 25 H 0.079 0.921 26 C 0.008 3.992 27 O -0.383 6.383 28 C -0.044 4.044 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.027 0.973 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.112 0.888 41 H 0.140 0.860 42 H 0.153 0.847 43 H 0.158 0.842 44 H 0.157 0.843 45 H 0.143 0.857 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.235 0.765 49 H 0.041 0.959 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.304 10.008 17.395 20.758 hybrid contribution 1.457 -0.465 -0.267 1.553 sum -3.847 9.544 17.128 19.981 Atomic orbital electron populations 1.21562 0.96091 0.99978 1.00595 1.21399 0.94566 0.97936 1.00188 1.19010 0.91419 0.91588 0.86616 0.98028 1.21899 0.94127 1.36813 1.05631 0.93947 1.25524 1.01532 0.95038 0.95415 1.69983 1.36220 1.38603 1.10157 0.85883 0.82020 0.77960 0.77371 1.20109 1.20450 1.20595 1.62626 1.56642 1.02251 1.03669 1.21888 0.97592 0.89604 0.97118 1.22084 0.95988 0.98369 0.89074 1.62031 1.58965 1.02247 1.02177 1.21146 0.98006 0.91114 0.93066 1.19841 0.95192 0.94816 0.98651 1.21178 0.95433 0.96847 0.99594 1.21415 1.00474 0.92966 1.00113 1.21442 0.94647 1.00240 0.98463 1.21396 0.96964 0.96524 0.99826 1.21260 1.00225 0.93267 0.99595 1.21825 0.97479 0.87608 0.94940 0.92098 1.22285 0.81596 0.99261 0.96088 1.86679 1.17807 1.84860 1.49003 1.21741 0.96598 0.97120 0.88970 0.93416 0.92366 0.94885 0.92027 0.95264 0.92949 0.97311 0.92181 0.90106 0.93999 0.93455 0.88810 0.86038 0.84671 0.84236 0.84346 0.85665 0.91192 0.92242 0.76467 0.95919 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.01 9.84 71.98 0.71 -4.31 16 2 C -0.10 -4.97 5.11 30.59 0.16 -4.82 16 3 C 0.22 11.38 1.73 44.17 0.08 11.46 16 4 H 0.00 0.10 8.03 -2.39 -0.02 0.08 16 5 C -0.55 -30.94 7.17 25.60 0.18 -30.75 16 6 H 0.04 2.52 5.80 -2.91 -0.02 2.50 16 7 C 0.02 1.40 5.30 84.65 0.45 1.85 16 8 N -0.91 -53.12 11.30 21.44 0.24 -52.88 16 9 Si 0.94 45.67 29.54 68.60 2.03 47.69 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 13 N -0.53 -22.99 3.96 -874.88 -3.46 -26.45 16 14 C 0.07 2.78 5.37 86.31 0.46 3.25 16 15 C 0.07 2.36 5.22 86.31 0.45 2.81 16 16 N -0.53 -16.17 4.46 -875.02 -3.90 -20.07 16 17 C 0.09 2.20 4.87 85.56 0.42 2.62 16 18 C -0.08 -2.02 4.85 -19.87 -0.10 -2.12 16 19 C -0.11 -2.63 9.70 22.27 0.22 -2.41 16 20 C -0.13 -2.73 10.05 22.27 0.22 -2.50 16 21 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 22 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 23 C -0.12 -2.75 7.89 22.27 0.18 -2.57 16 24 C 0.09 2.78 2.35 44.92 0.11 2.88 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 C 0.09 2.08 6.36 71.98 0.46 2.54 16 27 O -0.58 -16.19 12.73 -148.98 -1.90 -18.09 16 28 C 0.08 3.44 4.08 86.31 0.35 3.79 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 2.21 7.57 -2.39 -0.02 2.20 16 31 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 3.38 5.99 -2.38 -0.01 3.36 16 33 H 0.03 1.40 6.36 -2.39 -0.02 1.38 16 34 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 35 H 0.01 0.42 7.21 -2.39 -0.02 0.40 16 36 H 0.06 2.49 8.07 -2.39 -0.02 2.47 16 37 H 0.08 2.48 5.93 -2.39 -0.01 2.47 16 38 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.05 1.02 8.07 -2.39 -0.02 1.00 16 40 H 0.09 1.97 5.66 -2.39 -0.01 1.96 16 41 H 0.12 2.74 8.06 -2.91 -0.02 2.72 16 42 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 43 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 44 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 45 H 0.13 2.48 8.01 -2.91 -0.02 2.46 16 46 H 0.07 1.29 5.98 -2.39 -0.01 1.28 16 47 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.39 6.76 9.12 -74.06 -0.68 6.08 16 49 H 0.02 1.11 5.65 -2.38 -0.01 1.09 16 50 H 0.06 2.48 6.28 -2.39 -0.02 2.47 16 Total: -1.00 -67.30 378.27 -1.95 -69.25 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.25 Total: 23.41 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 4.79 Total: -22.88 kcal Atomic # 7 Polarization: -92.27 SS G_CDS: -7.12 Total: -99.39 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -1.90 Total: -18.09 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -67.30 -1.95 -69.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164870.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.046 kcal (2) G-P(sol) polarization free energy of solvation -67.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds