Wall clock time and date at job start Fri Apr 10 2020 23:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42903 * 109.47353 * 2 1 4 4 C 1.35896 * 117.00124 * 180.02562 * 3 2 1 5 5 C 1.38817 * 120.01842 * 359.97438 * 4 3 2 6 6 C 1.38169 * 120.09098 * 179.97438 * 5 4 3 7 7 C 1.38156 * 120.13019 * 0.03970 * 6 5 4 8 8 C 1.38928 * 120.03641 * 0.02562 * 7 6 5 9 9 N 1.39663 * 120.04665 * 179.97438 * 8 7 6 10 10 C 1.46956 * 111.00114 * 0.02562 * 9 8 7 11 11 C 1.53056 * 109.38342 * 183.17645 * 10 9 8 12 12 N 1.46963 * 109.35944 * 301.62902 * 11 10 9 13 13 C 1.46903 * 110.99595 * 183.16796 * 12 11 10 14 14 H 1.09001 * 109.46898 * 186.18135 * 13 12 11 15 15 C 1.50701 * 109.46779 * 306.17975 * 13 12 11 16 16 H 1.07995 * 120.00508 * 0.02562 * 15 13 12 17 17 C 1.37879 * 119.99736 * 180.02562 * 15 13 12 18 18 N 1.31516 * 119.99984 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 120.00189 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46720 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.46873 * 119.99898 * 19 17 15 22 22 H 1.48500 * 109.47117 * 239.99973 * 19 17 15 23 23 C 1.52995 * 109.47274 * 66.17850 * 13 12 11 24 24 C 1.53002 * 109.47246 * 64.99806 * 23 13 12 25 25 C 1.46956 * 110.89784 * 59.28921 * 12 11 10 26 26 C 1.46962 * 110.99746 * 123.80200 * 9 8 7 27 27 C 1.38578 * 120.01853 * 180.32313 * 4 3 2 28 28 H 1.09003 * 109.47199 * 59.99613 * 1 2 3 29 29 H 1.08996 * 109.47408 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47007 * 300.00000 * 1 2 3 31 31 H 1.09005 * 109.47007 * 240.00000 * 2 1 3 32 32 H 1.09003 * 109.46933 * 119.99906 * 2 1 3 33 33 H 1.07996 * 119.95102 * 0.02562 * 5 4 3 34 34 H 1.08005 * 119.93473 * 180.02562 * 6 5 4 35 35 H 1.08008 * 119.98033 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.48806 * 303.15372 * 10 9 8 37 37 H 1.09002 * 109.49141 * 63.19645 * 10 9 8 38 38 H 1.08992 * 109.49038 * 61.57437 * 11 10 9 39 39 H 1.08994 * 109.48641 * 181.64718 * 11 10 9 40 40 H 0.97002 * 120.00312 * 180.02562 * 18 17 15 41 41 H 1.08992 * 109.47455 * 185.00033 * 23 13 12 42 42 H 1.09003 * 109.47201 * 305.00394 * 23 13 12 43 43 H 1.09000 * 109.46974 * 300.00733 * 24 23 13 44 44 H 1.09003 * 109.46588 * 59.99629 * 24 23 13 45 45 H 1.08997 * 109.47319 * 179.97438 * 24 23 13 46 46 H 1.09002 * 109.48806 * 180.71933 * 25 12 11 47 47 H 1.09002 * 109.50952 * 60.66527 * 25 12 11 48 48 H 1.09001 * 109.48625 * 296.77877 * 26 9 8 49 49 H 1.09003 * 109.48941 * 56.82484 * 26 9 8 50 50 H 1.07994 * 120.06278 * 359.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1995 0.4247 -0.0005 6 6 5.5696 0.6040 -0.0016 7 6 6.1021 1.8787 -0.0019 8 6 5.2605 2.9840 -0.0005 9 7 5.7987 4.2728 -0.0003 10 6 7.2676 4.2302 -0.0022 11 6 7.8173 5.6563 0.0782 12 7 7.3141 6.4373 -1.0605 13 6 7.8801 7.7929 -1.0603 14 1 7.4095 8.3832 -1.8466 15 6 7.6270 8.4427 0.2756 16 1 7.0988 7.9026 1.0474 17 6 8.0696 9.7268 0.5125 18 7 8.7124 10.3847 -0.4276 19 14 7.7552 10.5327 2.1682 20 1 7.0173 9.5890 3.0458 21 1 9.0514 10.8857 2.8009 22 1 6.9475 11.7636 1.9742 23 6 9.3872 7.7163 -1.3128 24 6 9.6417 7.1716 -2.7197 25 6 5.8451 6.4800 -1.0586 26 6 5.2962 5.0535 -1.1395 27 6 3.8837 2.8057 0.0062 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 3.7862 -0.5730 -0.0005 34 1 6.2254 -0.2542 -0.0020 35 1 7.1735 2.0161 -0.0023 36 1 7.6159 3.6572 0.8572 37 1 7.6165 3.7571 -0.9201 38 1 7.4912 6.1199 1.0091 39 1 8.9065 5.6285 0.0474 40 1 9.0241 11.2880 -0.2608 41 1 9.8214 8.7121 -1.2247 42 1 9.8454 7.0538 -0.5784 43 1 9.2073 6.1758 -2.8078 44 1 9.1834 7.8340 -3.4541 45 1 10.7153 7.1175 -2.8997 46 1 5.4969 7.0529 -1.9181 47 1 5.4959 6.9528 -0.1407 48 1 5.6231 4.5900 -2.0703 49 1 4.2070 5.0807 -1.1096 50 1 3.2271 3.6631 0.0115 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255176070.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:55:15 Heat of formation + Delta-G solvation = -13.915578 kcal Electronic energy + Delta-G solvation = -27278.408725 eV Core-core repulsion = 23691.292764 eV Total energy + Delta-G solvation = -3587.115961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.54486 -40.38047 -38.73910 -36.79865 -34.49964 -33.15710 -32.95706 -32.08313 -30.86616 -30.09528 -28.59618 -26.68223 -25.09879 -24.74904 -24.20098 -22.77962 -22.15975 -21.28387 -20.60160 -19.31412 -18.25010 -17.45806 -17.06672 -17.00808 -16.72764 -16.54336 -15.90491 -15.77098 -15.54572 -15.28934 -15.11198 -14.62986 -14.52202 -14.19535 -14.08047 -13.85463 -13.52154 -13.36922 -13.27242 -13.02728 -12.89362 -12.81995 -12.66645 -12.55783 -12.47659 -12.23546 -12.14377 -11.98755 -11.83066 -11.62856 -11.56218 -11.49560 -11.15993 -11.00006 -10.58497 -10.42669 -9.28360 -8.95818 -8.76642 -8.03690 -6.24908 0.40547 0.51504 1.34377 1.38266 1.47772 2.19378 2.39776 2.68508 3.00461 3.15013 3.37249 3.85540 3.94915 4.08552 4.12398 4.13066 4.18132 4.23523 4.31415 4.40120 4.41736 4.46275 4.50535 4.60595 4.63094 4.67848 4.76232 4.78139 4.81505 4.91702 4.95761 4.97790 5.05838 5.09859 5.19107 5.21977 5.27920 5.31582 5.38011 5.43976 5.50513 5.52485 5.63172 5.64664 5.80016 6.02409 6.06880 6.18527 6.30032 6.39989 6.53110 6.62708 6.95531 7.45594 8.91712 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.019063 B = 0.002864 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.462126 B = 9774.124288 C =10459.932935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.337 6.337 4 C 0.144 3.856 5 C -0.238 4.238 6 C -0.051 4.051 7 C -0.217 4.217 8 C 0.145 3.855 9 N -0.502 5.502 10 C 0.067 3.933 11 C 0.064 3.936 12 N -0.529 5.529 13 C 0.221 3.779 14 H 0.005 0.995 15 C -0.547 4.547 16 H 0.047 0.953 17 C 0.023 3.977 18 N -0.909 5.909 19 Si 0.943 3.057 20 H -0.276 1.276 21 H -0.279 1.279 22 H -0.282 1.282 23 C -0.105 4.105 24 C -0.125 4.125 25 C 0.064 3.936 26 C 0.078 3.922 27 C -0.198 4.198 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.138 0.862 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.021 0.979 39 H 0.077 0.923 40 H 0.261 0.739 41 H 0.062 0.938 42 H 0.034 0.966 43 H 0.057 0.943 44 H 0.031 0.969 45 H 0.046 0.954 46 H 0.070 0.930 47 H 0.019 0.981 48 H 0.051 0.949 49 H 0.088 0.912 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.492 -23.072 -0.918 24.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.251 6.251 4 C 0.097 3.903 5 C -0.257 4.257 6 C -0.069 4.069 7 C -0.238 4.238 8 C 0.047 3.953 9 N -0.217 5.217 10 C -0.060 4.060 11 C -0.064 4.064 12 N -0.253 5.253 13 C 0.113 3.887 14 H 0.023 0.977 15 C -0.586 4.586 16 H 0.065 0.935 17 C -0.177 4.177 18 N -0.549 5.549 19 Si 0.770 3.230 20 H -0.201 1.201 21 H -0.205 1.205 22 H -0.208 1.208 23 C -0.143 4.143 24 C -0.182 4.182 25 C -0.065 4.065 26 C -0.047 4.047 27 C -0.220 4.220 28 H 0.080 0.920 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.167 0.833 34 H 0.172 0.828 35 H 0.156 0.844 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.039 0.961 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.038 0.962 48 H 0.070 0.930 49 H 0.106 0.894 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.543 -22.658 -0.981 24.605 hybrid contribution -0.098 1.244 1.135 1.687 sum -9.641 -21.414 0.153 23.485 Atomic orbital electron populations 1.21818 0.91743 1.04190 1.03003 1.23071 0.96693 0.80637 1.02445 1.86050 1.18929 1.31599 1.88535 1.18822 0.82695 0.93714 0.95020 1.21389 0.94317 0.98301 1.11724 1.21108 0.94617 0.97046 0.94138 1.21452 1.00447 0.92246 1.09633 1.18806 0.92548 0.88758 0.95196 1.59063 1.09240 1.11568 1.41827 1.22351 0.84749 0.96882 1.02000 1.21997 0.99526 0.92166 0.92728 1.62623 1.05756 1.15873 1.41009 1.19044 0.92217 0.83837 0.93563 0.97745 1.21977 1.36158 0.99655 1.00854 0.93480 1.25553 0.94941 0.97803 0.99353 1.69997 1.38878 1.12031 1.33968 0.85744 0.77842 0.78372 0.81078 1.20111 1.20462 1.20796 1.21427 0.97324 1.00395 0.95182 1.21563 0.99512 1.00479 0.96690 1.21949 0.89336 0.95247 0.99972 1.22194 0.99764 0.92478 0.90271 1.19945 0.93627 0.95699 1.12693 0.92049 0.87938 0.92163 0.90840 0.90968 0.83287 0.82825 0.84409 0.88801 0.92278 0.96067 0.90482 0.92945 0.91955 0.94775 0.92430 0.94970 0.93519 0.91140 0.96219 0.93025 0.89393 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.28 71.98 0.74 -0.88 16 2 C 0.05 0.65 5.46 71.98 0.39 1.04 16 3 O -0.34 -7.76 10.13 -92.38 -0.94 -8.70 16 4 C 0.14 3.53 6.68 22.49 0.15 3.68 16 5 C -0.24 -4.66 9.04 22.39 0.20 -4.46 16 6 C -0.05 -0.97 10.03 22.23 0.22 -0.75 16 7 C -0.22 -5.15 8.81 22.42 0.20 -4.95 16 8 C 0.15 4.14 5.63 38.20 0.22 4.35 16 9 N -0.50 -16.00 4.75 -694.82 -3.30 -19.30 16 10 C 0.07 2.04 4.29 86.31 0.37 2.41 16 11 C 0.06 2.47 4.96 86.31 0.43 2.90 16 12 N -0.53 -21.93 4.11 -874.85 -3.60 -25.53 16 13 C 0.22 10.89 1.71 44.17 0.08 10.96 16 14 H 0.00 0.26 8.03 -2.39 -0.02 0.24 16 15 C -0.55 -29.65 7.17 25.60 0.18 -29.47 16 16 H 0.05 2.63 5.80 -2.91 -0.02 2.61 16 17 C 0.02 1.29 5.29 84.65 0.45 1.73 16 18 N -0.91 -51.75 11.30 21.45 0.24 -51.50 16 19 Si 0.94 44.20 29.54 68.60 2.03 46.23 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 C -0.10 -4.91 5.17 30.59 0.16 -4.75 16 24 C -0.13 -4.90 9.80 71.98 0.71 -4.19 16 25 C 0.06 2.50 5.38 86.31 0.46 2.96 16 26 C 0.08 2.51 5.38 86.31 0.46 2.97 16 27 C -0.20 -5.61 9.13 22.49 0.21 -5.40 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.07 0.84 7.66 -2.38 -0.02 0.82 16 32 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 33 H 0.15 2.03 6.29 -2.91 -0.02 2.01 16 34 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 35 H 0.14 2.95 5.80 -2.91 -0.02 2.93 16 36 H 0.09 2.53 7.17 -2.39 -0.02 2.52 16 37 H 0.06 1.70 7.58 -2.39 -0.02 1.68 16 38 H 0.02 0.94 6.24 -2.39 -0.01 0.92 16 39 H 0.08 2.93 6.25 -2.39 -0.01 2.92 16 40 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 41 H 0.06 3.32 5.95 -2.39 -0.01 3.31 16 42 H 0.03 1.55 6.28 -2.39 -0.01 1.53 16 43 H 0.06 2.12 7.75 -2.39 -0.02 2.10 16 44 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.07 2.72 8.07 -2.39 -0.02 2.71 16 47 H 0.02 0.87 7.22 -2.39 -0.02 0.85 16 48 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.09 2.59 6.83 -2.39 -0.02 2.58 16 50 H 0.12 3.52 7.20 -2.91 -0.02 3.49 16 Total: -1.00 -62.46 378.39 0.97 -61.48 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.92 Total: 19.16 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 5.62 Total: -21.84 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -6.66 Total: -96.33 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.94 Total: -8.70 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -62.46 0.97 -61.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176070.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.569 kcal (2) G-P(sol) polarization free energy of solvation -62.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds