Wall clock time and date at job start Fri Apr 10 2020 23:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47271 * 2 1 4 4 C 1.36005 * 116.99822 * 179.97438 * 3 2 1 5 5 C 1.38701 * 119.97547 * 179.97438 * 4 3 2 6 6 C 1.38112 * 120.01839 * 180.02562 * 5 4 3 7 7 C 1.38858 * 119.97724 * 359.97438 * 6 5 4 8 8 N 1.39943 * 120.01765 * 179.97438 * 7 6 5 9 9 C 1.46959 * 110.99786 * 180.02562 * 8 7 6 10 10 C 1.53056 * 109.35991 * 176.81088 * 9 8 7 11 11 N 1.46961 * 109.36317 * 58.40204 * 10 9 8 12 12 C 1.46904 * 110.99832 * 176.80789 * 11 10 9 13 13 H 1.08994 * 109.47183 * 179.22799 * 12 11 10 14 14 C 1.50701 * 109.47001 * 59.23282 * 12 11 10 15 15 H 1.08009 * 119.99802 * 359.97438 * 14 12 11 16 16 C 1.37877 * 120.00273 * 179.97438 * 14 12 11 17 17 N 1.31512 * 119.99506 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00276 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47026 * 59.99937 * 18 16 14 20 20 H 1.48503 * 109.46979 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46984 * 299.99823 * 18 16 14 22 22 C 1.52995 * 109.46995 * 299.23544 * 12 11 10 23 23 C 1.53006 * 109.47076 * 296.33963 * 22 12 11 24 24 C 1.46952 * 110.87724 * 300.67754 * 11 10 9 25 25 C 1.46952 * 110.99890 * 56.19987 * 8 7 6 26 26 C 1.38863 * 119.96684 * 0.27320 * 7 6 5 27 27 C 1.38111 * 119.97599 * 359.44759 * 26 7 6 28 28 H 1.08997 * 109.47465 * 299.99921 * 1 2 3 29 29 H 1.08999 * 109.46735 * 60.00079 * 1 2 3 30 30 H 1.09001 * 109.47281 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47472 * 239.99569 * 2 1 3 32 32 H 1.09008 * 109.47158 * 119.99542 * 2 1 3 33 33 H 1.08002 * 119.99104 * 0.02562 * 5 4 3 34 34 H 1.07991 * 120.01117 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.49357 * 56.84511 * 9 8 7 36 36 H 1.08998 * 109.48622 * 296.77341 * 9 8 7 37 37 H 1.09007 * 109.48578 * 178.36568 * 10 9 8 38 38 H 1.08996 * 109.48901 * 298.41196 * 10 9 8 39 39 H 0.97004 * 119.99633 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.47545 * 56.34475 * 22 12 11 41 41 H 1.09000 * 109.46798 * 176.34469 * 22 12 11 42 42 H 1.09000 * 109.47079 * 185.06551 * 23 22 12 43 43 H 1.08997 * 109.46874 * 305.07045 * 23 22 12 44 44 H 1.08999 * 109.46524 * 65.06731 * 23 22 12 45 45 H 1.09000 * 109.48563 * 179.29407 * 24 11 10 46 46 H 1.09000 * 109.48969 * 299.34892 * 24 11 10 47 47 H 1.08997 * 109.48957 * 63.22270 * 25 8 7 48 48 H 1.08997 * 109.48868 * 303.15624 * 25 8 7 49 49 H 1.08000 * 120.01575 * 179.70310 * 26 7 6 50 50 H 1.07993 * 119.99170 * 180.27752 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3547 1.5254 0.0005 5 6 3.8844 2.8073 0.0000 6 6 5.2535 2.9892 0.0001 7 6 6.0997 1.8883 0.0011 8 7 7.4870 2.0716 0.0006 9 6 8.1888 0.7804 0.0013 10 6 9.6979 1.0231 -0.0797 11 7 10.1203 1.8495 1.0598 12 6 11.5766 2.0420 1.0592 13 1 11.8607 2.6682 1.9049 14 6 11.9943 2.7118 -0.2245 15 1 11.2521 2.9685 -0.9660 16 6 13.3239 2.9970 -0.4524 17 7 14.2276 2.6840 0.4503 18 14 13.8416 3.8279 -2.0433 19 1 13.1676 5.1464 -2.1552 20 1 15.3138 4.0224 -2.0439 21 1 13.4550 2.9750 -3.1958 22 6 12.2706 0.6834 1.1748 23 6 11.9184 0.0435 2.5193 24 6 9.4184 3.1406 1.0590 25 6 7.9094 2.8985 1.1396 26 6 5.5685 0.6052 -0.0036 27 6 4.1992 0.4252 0.0022 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.2260 3.6635 -0.0004 34 1 5.6657 3.9873 -0.0008 35 1 7.8686 0.1919 -0.8584 36 1 7.9560 0.2406 0.9191 37 1 10.2219 0.0677 -0.0500 38 1 9.9338 1.5387 -1.0105 39 1 15.1630 2.8850 0.2901 40 1 11.9366 0.0347 0.3650 41 1 13.3500 0.8200 1.1091 42 1 12.4826 -0.8812 2.6404 43 1 12.1706 0.7315 3.3262 44 1 10.8511 -0.1755 2.5488 45 1 9.7387 3.7291 1.9187 46 1 9.6512 3.6806 0.1413 47 1 7.6733 2.3830 2.0705 48 1 7.3853 3.8538 1.1095 49 1 6.2260 -0.2516 -0.0076 50 1 3.7859 -0.5725 0.0031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179480.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:55:24 Heat of formation + Delta-G solvation = 2.221603 kcal Electronic energy + Delta-G solvation = -27179.627259 eV Core-core repulsion = 23593.211058 eV Total energy + Delta-G solvation = -3586.416201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.46389 -39.22106 -37.43705 -35.37384 -32.74114 -31.93626 -31.43165 -31.20898 -30.06563 -28.70604 -26.69384 -24.89828 -24.44274 -23.30393 -22.78776 -21.49591 -21.16568 -19.81115 -18.86621 -18.41182 -16.93185 -16.29749 -16.26731 -15.83352 -15.22493 -14.80148 -14.52933 -14.26208 -14.05760 -13.80190 -13.58237 -13.52977 -13.40384 -13.23023 -12.89233 -12.70492 -12.50952 -12.08097 -12.03071 -11.91289 -11.67290 -11.45446 -11.15842 -10.98333 -10.91972 -10.85805 -10.72310 -10.65313 -10.47564 -10.33029 -9.84610 -9.69476 -9.38739 -9.23158 -9.05471 -8.97331 -8.36679 -7.37962 -7.15450 -5.99311 -4.12406 1.32369 1.46783 3.08456 3.28536 3.33538 3.36919 3.68327 4.09335 4.39825 4.62404 4.63373 4.80633 4.85872 4.94783 4.99720 5.17168 5.24754 5.28458 5.32597 5.38068 5.46546 5.52513 5.59937 5.68992 5.71247 5.84203 5.88352 5.98105 5.99935 6.10552 6.17015 6.31709 6.32837 6.41899 6.46728 6.54806 6.62384 6.66187 6.74488 6.84116 7.05156 7.15051 7.24594 7.28294 7.33972 7.53379 7.59674 7.74812 7.95083 8.13826 8.28932 8.43757 8.97094 9.55196 10.99938 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.023865 B = 0.002661 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.965444 B =10521.553481 C =11073.539451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.321 6.321 4 C 0.092 3.908 5 C -0.126 4.126 6 C -0.105 4.105 7 C 0.090 3.910 8 N -0.486 5.486 9 C 0.055 3.945 10 C 0.060 3.940 11 N -0.535 5.535 12 C 0.215 3.785 13 H 0.039 0.961 14 C -0.543 4.543 15 H 0.057 0.943 16 C 0.068 3.932 17 N -0.886 5.886 18 Si 0.887 3.113 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.278 1.278 22 C -0.113 4.113 23 C -0.136 4.136 24 C 0.062 3.938 25 C 0.064 3.936 26 C -0.135 4.135 27 C -0.180 4.180 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.261 0.739 40 H 0.033 0.967 41 H 0.093 0.907 42 H 0.025 0.975 43 H 0.040 0.960 44 H 0.044 0.956 45 H 0.071 0.929 46 H 0.049 0.951 47 H 0.044 0.956 48 H 0.074 0.926 49 H 0.130 0.870 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.113 -5.134 0.858 21.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.236 6.236 4 C 0.046 3.954 5 C -0.145 4.145 6 C -0.125 4.125 7 C -0.008 4.008 8 N -0.201 5.201 9 C -0.072 4.072 10 C -0.069 4.069 11 N -0.260 5.260 12 C 0.109 3.891 13 H 0.057 0.943 14 C -0.582 4.582 15 H 0.075 0.925 16 C -0.134 4.134 17 N -0.524 5.524 18 Si 0.715 3.285 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.151 4.151 23 C -0.194 4.194 24 C -0.067 4.067 25 C -0.061 4.061 26 C -0.156 4.156 27 C -0.199 4.199 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.052 0.948 41 H 0.111 0.889 42 H 0.044 0.956 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.090 0.910 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.093 0.907 49 H 0.148 0.852 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.952 -4.966 0.925 21.552 hybrid contribution 0.538 0.242 -1.131 1.275 sum -20.414 -4.725 -0.205 20.955 Atomic orbital electron populations 1.21767 0.92973 1.02697 1.03426 1.22709 0.95637 0.82426 1.01224 1.86052 1.19299 1.28762 1.89450 1.18840 0.81986 0.94123 1.00418 1.20246 0.94665 0.94681 1.04901 1.20629 0.91634 0.98379 1.01892 1.19057 0.89339 0.92992 0.99411 1.59320 1.01828 1.17331 1.41639 1.22437 0.95495 0.88909 1.00378 1.22021 0.91168 0.98991 0.94717 1.62675 1.09276 1.13709 1.40299 1.19269 0.80430 0.93348 0.96083 0.94327 1.21699 0.92844 1.39458 1.04167 0.92483 1.24902 0.96719 0.95409 0.96370 1.69862 1.01506 1.47003 1.34059 0.86736 0.77372 0.80130 0.84235 1.20358 1.21312 1.20366 1.21631 1.03826 0.96124 0.93509 1.21697 0.99792 0.98449 0.99452 1.21948 0.90272 0.92933 1.01559 1.22367 0.97382 0.96386 0.90014 1.21149 0.94720 0.96746 1.02982 1.21045 0.93900 0.97738 1.07267 0.91592 0.91599 0.90529 0.92261 0.92270 0.85353 0.85071 0.90832 0.93607 0.90439 0.93312 0.92857 0.94820 0.88909 0.95606 0.94124 0.93720 0.91031 0.93301 0.93789 0.90738 0.85226 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.06 0.45 5.46 37.16 0.20 0.65 16 3 O -0.32 -3.69 10.14 -19.76 -0.20 -3.89 16 4 C 0.09 1.13 6.69 -39.24 -0.26 0.87 16 5 C -0.13 -1.54 9.98 -39.46 -0.39 -1.94 16 6 C -0.10 -1.37 9.19 -39.40 -0.36 -1.73 16 7 C 0.09 1.29 5.64 -83.69 -0.47 0.82 16 8 N -0.49 -7.68 4.76 -170.91 -0.81 -8.49 16 9 C 0.05 0.86 4.30 -3.76 -0.02 0.85 16 10 C 0.06 1.13 4.96 -3.76 -0.02 1.11 16 11 N -0.53 -10.85 4.19 -227.88 -0.96 -11.80 16 12 C 0.21 5.12 1.77 -68.86 -0.12 4.99 16 13 H 0.04 1.03 8.12 -51.93 -0.42 0.61 16 14 C -0.54 -14.15 7.13 -34.44 -0.25 -14.40 16 15 H 0.06 1.52 5.80 -52.48 -0.30 1.21 16 16 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 17 N -0.89 -24.50 11.30 55.43 0.63 -23.87 16 18 Si 0.89 21.03 29.54 -169.99 -5.02 16.00 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.11 -2.58 5.01 -26.73 -0.13 -2.72 16 23 C -0.14 -2.70 9.73 37.16 0.36 -2.34 16 24 C 0.06 1.16 5.31 -3.77 -0.02 1.14 16 25 C 0.06 1.00 5.38 -3.77 -0.02 0.98 16 26 C -0.13 -1.76 8.82 -39.40 -0.35 -2.11 16 27 C -0.18 -2.13 9.03 -39.46 -0.36 -2.49 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 32 H 0.06 0.44 7.66 -51.92 -0.40 0.04 16 33 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 34 H 0.13 1.57 7.18 -52.49 -0.38 1.20 16 35 H 0.07 1.05 7.16 -51.93 -0.37 0.68 16 36 H 0.05 0.71 7.60 -51.93 -0.39 0.31 16 37 H 0.08 1.47 6.09 -51.93 -0.32 1.15 16 38 H 0.05 1.04 6.53 -51.93 -0.34 0.70 16 39 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.03 0.76 6.17 -51.93 -0.32 0.44 16 41 H 0.09 2.40 5.98 -51.93 -0.31 2.09 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.04 0.84 7.86 -51.93 -0.41 0.43 16 45 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16 46 H 0.05 1.03 6.86 -51.93 -0.36 0.67 16 47 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.07 1.03 6.82 -51.93 -0.35 0.68 16 49 H 0.13 1.57 5.81 -52.49 -0.30 1.27 16 50 H 0.12 1.18 6.29 -52.49 -0.33 0.85 16 LS Contribution 378.13 15.07 5.70 5.70 Total: -1.00 -28.00 378.13 -10.80 -38.80 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -8.22 Total: 2.65 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -1.92 Total: -15.10 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -1.14 Total: -44.16 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.20 Total: -3.89 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -28.00 -10.80 -38.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179480.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.021 kcal (2) G-P(sol) polarization free energy of solvation -27.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds