Wall clock time and date at job start Fri Apr 10 2020 23:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 119.99869 * 2 1 4 4 H 1.48493 * 109.47122 * 275.68854 * 3 2 1 5 5 H 1.48499 * 109.47102 * 35.69034 * 3 2 1 6 6 H 1.48500 * 109.46822 * 155.68566 * 3 2 1 7 7 C 1.38812 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00274 * 32.02892 * 7 2 1 9 9 N 1.36936 * 119.99819 * 212.03166 * 7 2 1 10 10 C 1.46502 * 120.00003 * 40.72444 * 9 7 2 11 11 C 1.50705 * 109.46641 * 96.42650 * 10 9 7 12 12 C 1.37867 * 120.26319 * 116.39723 * 11 10 9 13 13 C 1.39662 * 118.81683 * 180.02562 * 12 11 10 14 14 O 1.22099 * 120.20405 * 179.97438 * 13 12 11 15 15 N 1.36350 * 119.59866 * 359.97438 * 13 12 11 16 16 C 1.37157 * 127.31282 * 179.97438 * 15 13 12 17 17 C 1.30888 * 116.61920 * 180.27078 * 16 15 13 18 18 S 1.75726 * 109.69275 * 359.63282 * 17 16 15 19 19 C 1.35374 * 118.86124 * 0.02562 * 15 13 12 20 20 N 1.32423 * 120.25818 * 296.41353 * 11 10 9 21 21 C 1.46503 * 119.99829 * 220.73209 * 9 7 2 22 22 C 1.54266 * 110.03385 * 57.90862 * 21 9 7 23 23 C 1.54964 * 104.15668 * 217.14003 * 22 21 9 24 24 C 1.54890 * 102.78157 * 37.88175 * 23 22 21 25 25 C 1.53869 * 110.03157 * 300.68603 * 21 9 7 26 26 H 0.96997 * 120.00120 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47160 * 336.42678 * 10 9 7 28 28 H 1.08998 * 109.47136 * 216.42264 * 10 9 7 29 29 H 1.08007 * 120.59266 * 359.97438 * 12 11 10 30 30 H 1.08001 * 121.69175 * 359.97438 * 16 15 13 31 31 H 1.07998 * 125.15675 * 179.75552 * 17 16 15 32 32 H 1.09002 * 110.01689 * 179.29497 * 21 9 7 33 33 H 1.09006 * 110.48149 * 335.77985 * 22 21 9 34 34 H 1.08993 * 110.48871 * 98.42672 * 22 21 9 35 35 H 1.09004 * 110.71944 * 279.57061 * 23 22 21 36 36 H 1.08999 * 110.92489 * 156.29422 * 23 22 21 37 37 H 1.08993 * 110.48830 * 203.40677 * 24 23 22 38 38 H 1.08998 * 110.59711 * 80.82023 * 24 23 22 39 39 H 1.09004 * 110.03445 * 238.57385 * 25 21 9 40 40 H 1.09007 * 110.03419 * 359.95462 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3775 2.1158 -1.3931 5 1 1.5130 2.6150 0.8168 6 1 3.6027 1.4085 0.5765 7 6 2.0103 -1.2022 -0.0005 8 1 1.5936 -2.0661 -0.4970 9 7 3.2233 -1.2927 0.6284 10 6 3.4286 -0.6361 1.9219 11 6 3.2180 -1.6345 3.0309 12 6 4.2605 -1.9755 3.8662 13 6 4.0318 -2.9044 4.8837 14 8 4.9371 -3.2250 5.6376 15 7 2.7913 -3.4511 5.0301 16 6 2.3934 -4.3708 5.9666 17 6 1.1449 -4.7601 5.9127 18 16 0.3233 -3.9340 4.5971 19 6 1.8076 -3.0767 4.1789 20 7 2.0301 -2.1915 3.2107 21 6 4.3158 -2.0460 0.0077 22 6 4.6284 -1.4698 -1.3887 23 6 4.9652 -2.7159 -2.2462 24 6 3.9619 -3.7734 -1.7226 25 6 3.8927 -3.5101 -0.2042 26 1 -0.4850 0.8400 0.0004 27 1 2.7176 0.1829 2.0305 28 1 4.4445 -0.2447 1.9735 29 1 5.2369 -1.5327 3.7354 30 1 3.0768 -4.7579 6.7079 31 1 0.6882 -5.4785 6.5773 32 1 5.2045 -2.0016 0.6374 33 1 3.7572 -0.9535 -1.7921 34 1 5.4839 -0.7962 -1.3407 35 1 5.9919 -3.0379 -2.0719 36 1 4.7990 -2.5165 -3.3048 37 1 4.3315 -4.7799 -1.9188 38 1 2.9824 -3.6320 -2.1794 39 1 4.5764 -4.1763 0.3219 40 1 2.8747 -3.6604 0.1554 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156699722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:57:20 Heat of formation + Delta-G solvation = 65.832805 kcal Electronic energy + Delta-G solvation = -25120.007930 eV Core-core repulsion = 21642.010889 eV Total energy + Delta-G solvation = -3477.997041 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.99539 -38.18759 -37.47546 -36.95707 -34.33232 -31.88087 -31.11888 -30.52213 -27.98391 -27.66801 -26.36854 -25.41289 -23.28021 -22.20977 -21.41162 -20.01781 -19.11602 -18.68766 -18.10509 -17.00288 -16.55006 -16.30978 -15.53623 -15.17594 -14.85743 -14.71172 -14.38169 -13.93474 -13.48475 -13.40584 -13.23327 -13.08895 -12.85311 -12.67458 -12.28057 -11.88028 -11.44551 -11.23798 -11.01229 -10.73223 -10.53224 -10.50453 -10.48164 -10.39874 -10.07230 -10.01118 -9.97198 -9.82823 -9.63175 -9.43509 -9.03573 -8.48963 -7.45134 -6.88163 -6.14278 -3.41521 0.39861 0.78909 1.46892 1.53033 2.21612 2.47895 3.31591 3.44884 3.48302 3.86076 4.45219 4.48726 4.51552 4.83674 5.00822 5.07990 5.17498 5.29221 5.32671 5.39732 5.59589 5.67590 5.84332 5.98674 6.01297 6.15629 6.17959 6.22720 6.30814 6.37581 6.44771 6.50419 6.55170 6.59477 6.66572 6.69030 6.88582 7.07482 7.13623 7.92546 7.95760 8.10982 8.39442 8.89292 9.62319 10.03673 10.99768 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.005284 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.462374 B = 5297.773780 C = 5938.842052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.054 3.946 3 Si 0.844 3.156 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.261 1.261 7 C -0.256 4.256 8 H 0.077 0.923 9 N -0.574 5.574 10 C 0.185 3.815 11 C 0.211 3.789 12 C -0.335 4.335 13 C 0.527 3.473 14 O -0.552 6.552 15 N -0.465 5.465 16 C 0.063 3.937 17 C -0.246 4.246 18 S 0.198 5.802 19 C 0.288 3.712 20 N -0.454 5.454 21 C 0.170 3.830 22 C -0.133 4.133 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.133 4.133 26 H 0.264 0.736 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.154 0.846 30 H 0.185 0.815 31 H 0.195 0.805 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.042 0.958 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.991 -7.885 7.039 10.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.150 4.150 3 Si 0.671 3.329 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.185 1.185 7 C -0.384 4.384 8 H 0.095 0.905 9 N -0.292 5.292 10 C 0.058 3.942 11 C 0.078 3.922 12 C -0.364 4.364 13 C 0.333 3.667 14 O -0.434 6.434 15 N -0.177 5.177 16 C -0.065 4.065 17 C -0.384 4.384 18 S 0.449 5.551 19 C -0.080 4.080 20 N -0.179 5.179 21 C 0.063 3.937 22 C -0.171 4.171 23 C -0.159 4.159 24 C -0.154 4.154 25 C -0.173 4.173 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.171 0.829 30 H 0.202 0.798 31 H 0.213 0.787 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.556 -7.685 6.378 10.108 hybrid contribution 2.317 0.647 1.108 2.648 sum 3.873 -7.039 7.487 10.981 Atomic orbital electron populations 1.70058 1.06409 1.27032 1.46472 1.25491 0.94675 0.97613 0.97212 0.87340 0.81866 0.85730 0.78002 1.21469 1.22053 1.18525 1.18444 0.93195 0.95191 1.31579 0.90532 1.44201 1.10885 1.60497 1.13615 1.20587 0.99922 0.91662 0.82003 1.23156 0.85740 0.92740 0.90589 1.22494 1.03444 1.08697 1.01764 1.17351 0.79382 0.82858 0.87138 1.90908 1.40741 1.64200 1.47530 1.45341 1.13091 1.33930 1.25311 1.20748 0.97252 0.93141 0.95355 1.25099 0.96985 1.09523 1.06749 1.85433 1.03570 1.38364 1.27770 1.26388 0.93606 0.96964 0.91010 1.68310 1.24511 1.09699 1.15334 1.21152 0.89339 0.90457 0.92732 1.22784 1.01240 0.96703 0.96422 1.22418 0.98178 0.96500 0.98849 1.22233 0.99426 0.97264 0.96466 1.22555 1.02009 0.97406 0.95298 0.92607 0.90109 0.91676 0.82852 0.79847 0.78749 0.92824 0.89506 0.93257 0.92706 0.92508 0.93312 0.91585 0.93893 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.37 13.97 55.49 0.78 -23.59 16 2 C 0.05 1.42 4.99 -17.43 -0.09 1.34 16 3 Si 0.84 19.97 26.40 -169.99 -4.49 15.49 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -5.78 6.02 56.52 0.34 -5.44 16 7 C -0.26 -6.43 7.94 -15.06 -0.12 -6.55 16 8 H 0.08 2.14 7.34 -52.49 -0.39 1.75 16 9 N -0.57 -12.43 1.91 -165.75 -0.32 -12.75 16 10 C 0.19 3.81 4.25 -5.19 -0.02 3.79 16 11 C 0.21 4.20 6.38 -82.47 -0.53 3.67 16 12 C -0.33 -6.19 9.67 -39.19 -0.38 -6.57 16 13 C 0.53 9.92 7.51 -15.01 -0.11 9.80 16 14 O -0.55 -11.36 17.46 4.83 0.08 -11.28 16 15 N -0.46 -7.64 2.82 -66.36 -0.19 -7.83 16 16 C 0.06 0.76 10.46 -16.86 -0.18 0.59 16 17 C -0.25 -2.34 11.12 29.05 0.32 -2.02 16 18 S 0.20 2.54 23.37 -107.50 -2.51 0.03 16 19 C 0.29 4.99 8.32 -87.90 -0.73 4.26 16 20 N -0.45 -9.36 10.36 -9.01 -0.09 -9.45 16 21 C 0.17 3.20 3.41 -66.81 -0.23 2.97 16 22 C -0.13 -2.36 6.42 -25.03 -0.16 -2.52 16 23 C -0.12 -1.85 6.91 -24.70 -0.17 -2.02 16 24 C -0.12 -1.88 6.83 -25.07 -0.17 -2.05 16 25 C -0.13 -2.42 6.19 -25.62 -0.16 -2.58 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.08 1.81 5.00 -51.93 -0.26 1.55 16 28 H 0.07 1.18 7.82 -51.93 -0.41 0.78 16 29 H 0.15 2.58 7.98 -52.48 -0.42 2.16 16 30 H 0.18 1.87 8.00 -52.49 -0.42 1.45 16 31 H 0.20 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.05 0.95 7.91 -51.93 -0.41 0.54 16 33 H 0.09 1.78 7.03 -51.93 -0.37 1.41 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.58 6.98 -51.93 -0.36 1.22 16 LS Contribution 340.21 15.07 5.13 5.13 Total: -1.00 -30.71 340.21 -9.52 -40.23 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.18 Total: 1.90 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -2.72 Total: 2.13 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.18 Total: -53.62 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.49 Total: 15.49 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -2.51 Total: 0.03 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.71 -9.52 -40.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156699722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.059 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds