Wall clock time and date at job start Fri Apr 10 2020 23:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 119.99869 * 2 1 4 4 H 1.48493 * 109.47122 * 275.68854 * 3 2 1 5 5 H 1.48499 * 109.47102 * 35.69034 * 3 2 1 6 6 H 1.48500 * 109.46822 * 155.68566 * 3 2 1 7 7 C 1.38812 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00274 * 32.02892 * 7 2 1 9 9 N 1.36936 * 119.99819 * 212.03166 * 7 2 1 10 10 C 1.46502 * 120.00003 * 40.72444 * 9 7 2 11 11 C 1.50705 * 109.46641 * 96.42650 * 10 9 7 12 12 C 1.37867 * 120.26319 * 116.39723 * 11 10 9 13 13 C 1.39662 * 118.81683 * 180.02562 * 12 11 10 14 14 O 1.22099 * 120.20405 * 179.97438 * 13 12 11 15 15 N 1.36350 * 119.59866 * 359.97438 * 13 12 11 16 16 C 1.37157 * 127.31282 * 179.97438 * 15 13 12 17 17 C 1.30888 * 116.61920 * 180.27078 * 16 15 13 18 18 S 1.75726 * 109.69275 * 359.63282 * 17 16 15 19 19 C 1.35374 * 118.86124 * 0.02562 * 15 13 12 20 20 N 1.32423 * 120.25818 * 296.41353 * 11 10 9 21 21 C 1.46503 * 119.99829 * 220.73209 * 9 7 2 22 22 C 1.54266 * 110.03385 * 57.90862 * 21 9 7 23 23 C 1.54964 * 104.15668 * 217.14003 * 22 21 9 24 24 C 1.54890 * 102.78157 * 37.88175 * 23 22 21 25 25 C 1.53869 * 110.03157 * 300.68603 * 21 9 7 26 26 H 0.96997 * 120.00120 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47160 * 336.42678 * 10 9 7 28 28 H 1.08998 * 109.47136 * 216.42264 * 10 9 7 29 29 H 1.08007 * 120.59266 * 359.97438 * 12 11 10 30 30 H 1.08001 * 121.69175 * 359.97438 * 16 15 13 31 31 H 1.07998 * 125.15675 * 179.75552 * 17 16 15 32 32 H 1.09002 * 110.01689 * 179.29497 * 21 9 7 33 33 H 1.09006 * 110.48149 * 335.77985 * 22 21 9 34 34 H 1.08993 * 110.48871 * 98.42672 * 22 21 9 35 35 H 1.09004 * 110.71944 * 279.57061 * 23 22 21 36 36 H 1.08999 * 110.92489 * 156.29422 * 23 22 21 37 37 H 1.08993 * 110.48830 * 203.40677 * 24 23 22 38 38 H 1.08998 * 110.59711 * 80.82023 * 24 23 22 39 39 H 1.09004 * 110.03445 * 238.57385 * 25 21 9 40 40 H 1.09007 * 110.03419 * 359.95462 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3775 2.1158 -1.3931 5 1 1.5130 2.6150 0.8168 6 1 3.6027 1.4085 0.5765 7 6 2.0103 -1.2022 -0.0005 8 1 1.5936 -2.0661 -0.4970 9 7 3.2233 -1.2927 0.6284 10 6 3.4286 -0.6361 1.9219 11 6 3.2180 -1.6345 3.0309 12 6 4.2605 -1.9755 3.8662 13 6 4.0318 -2.9044 4.8837 14 8 4.9371 -3.2250 5.6376 15 7 2.7913 -3.4511 5.0301 16 6 2.3934 -4.3708 5.9666 17 6 1.1449 -4.7601 5.9127 18 16 0.3233 -3.9340 4.5971 19 6 1.8076 -3.0767 4.1789 20 7 2.0301 -2.1915 3.2107 21 6 4.3158 -2.0460 0.0077 22 6 4.6284 -1.4698 -1.3887 23 6 4.9652 -2.7159 -2.2462 24 6 3.9619 -3.7734 -1.7226 25 6 3.8927 -3.5101 -0.2042 26 1 -0.4850 0.8400 0.0004 27 1 2.7176 0.1829 2.0305 28 1 4.4445 -0.2447 1.9735 29 1 5.2369 -1.5327 3.7354 30 1 3.0768 -4.7579 6.7079 31 1 0.6882 -5.4785 6.5773 32 1 5.2045 -2.0016 0.6374 33 1 3.7572 -0.9535 -1.7921 34 1 5.4839 -0.7962 -1.3407 35 1 5.9919 -3.0379 -2.0719 36 1 4.7990 -2.5165 -3.3048 37 1 4.3315 -4.7799 -1.9188 38 1 2.9824 -3.6320 -2.1794 39 1 4.5764 -4.1763 0.3219 40 1 2.8747 -3.6604 0.1554 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156699722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:57:19 Heat of formation + Delta-G solvation = 47.993755 kcal Electronic energy + Delta-G solvation = -25120.781489 eV Core-core repulsion = 21642.010889 eV Total energy + Delta-G solvation = -3478.770600 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.32478 -39.68475 -38.88544 -38.31251 -35.91153 -33.64800 -32.39459 -32.00724 -29.38078 -29.09115 -28.04451 -26.77410 -24.87369 -23.56527 -22.74874 -21.33585 -20.71883 -19.93621 -19.54353 -18.45746 -18.04454 -17.70164 -17.11573 -16.77743 -16.35185 -15.96033 -15.68607 -15.26409 -15.01811 -14.75948 -14.63821 -14.60685 -14.35448 -14.20600 -13.97097 -13.27843 -12.85060 -12.71282 -12.56102 -12.41250 -12.22704 -12.00485 -11.83606 -11.74723 -11.58201 -11.41176 -11.34284 -11.26254 -11.21088 -10.88045 -10.45190 -10.37254 -8.72704 -8.64677 -8.13598 -5.41328 -0.90777 -0.42909 0.32578 0.51840 0.88635 1.25958 1.40624 1.50714 1.56966 2.41494 2.53262 3.06542 3.12765 3.25995 3.44985 3.81558 3.95719 4.01372 4.15768 4.24755 4.29572 4.36804 4.49672 4.61223 4.65444 4.74238 4.77126 4.89569 4.93411 4.95397 4.96600 5.16508 5.18339 5.22023 5.29672 5.31251 5.49610 5.59212 5.70192 6.03532 6.38291 6.53817 6.70783 7.07767 7.72532 8.16684 9.05807 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.005284 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.462374 B = 5297.773780 C = 5938.842052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.004 3.996 3 Si 0.899 3.101 4 H -0.296 1.296 5 H -0.305 1.305 6 H -0.235 1.235 7 C -0.228 4.228 8 H 0.034 0.966 9 N -0.584 5.584 10 C 0.183 3.817 11 C 0.211 3.789 12 C -0.333 4.333 13 C 0.520 3.480 14 O -0.575 6.575 15 N -0.462 5.462 16 C 0.026 3.974 17 C -0.193 4.193 18 S 0.228 5.772 19 C 0.271 3.729 20 N -0.507 5.507 21 C 0.162 3.838 22 C -0.133 4.133 23 C -0.111 4.111 24 C -0.114 4.114 25 C -0.127 4.127 26 H 0.259 0.741 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.169 0.831 30 H 0.207 0.793 31 H 0.251 0.749 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.042 0.958 39 H 0.057 0.943 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.728 -9.775 8.931 14.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.194 4.194 3 Si 0.725 3.275 4 H -0.224 1.224 5 H -0.233 1.233 6 H -0.158 1.158 7 C -0.358 4.358 8 H 0.052 0.948 9 N -0.303 5.303 10 C 0.056 3.944 11 C 0.077 3.923 12 C -0.363 4.363 13 C 0.327 3.673 14 O -0.459 6.459 15 N -0.172 5.172 16 C -0.099 4.099 17 C -0.330 4.330 18 S 0.479 5.521 19 C -0.094 4.094 20 N -0.234 5.234 21 C 0.057 3.943 22 C -0.172 4.172 23 C -0.148 4.148 24 C -0.151 4.151 25 C -0.167 4.167 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.186 0.814 30 H 0.224 0.776 31 H 0.267 0.733 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.307 -9.630 8.326 13.153 hybrid contribution 1.659 0.939 0.787 2.062 sum 4.966 -8.691 9.113 13.537 Atomic orbital electron populations 1.70160 1.07855 1.27074 1.51130 1.25910 0.95021 1.00183 0.98320 0.86451 0.81796 0.82054 0.77162 1.22399 1.23255 1.15841 1.18039 0.93769 0.93352 1.30635 0.94810 1.44166 1.10422 1.61008 1.14728 1.20544 1.00687 0.91241 0.81900 1.22925 0.86169 0.91923 0.91303 1.22616 1.03576 1.08555 1.01539 1.17354 0.79936 0.83084 0.86962 1.90890 1.41549 1.65183 1.48272 1.45345 1.12274 1.33984 1.25601 1.21246 0.98953 0.93787 0.95959 1.25793 0.95212 1.07524 1.04434 1.85531 1.01469 1.36851 1.28238 1.26997 0.95474 0.96720 0.90242 1.68226 1.25413 1.12084 1.17627 1.21379 0.89076 0.90325 0.93566 1.22738 1.00472 0.97936 0.96038 1.22388 0.99087 0.94471 0.98895 1.22206 0.98907 0.99203 0.94818 1.22452 0.99877 0.97519 0.96811 0.93197 0.92270 0.88931 0.81350 0.77610 0.73253 0.90921 0.92933 0.91449 0.90013 0.91449 0.90788 0.93916 0.92436 0.94588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.38 13.97 21.65 0.30 -55.08 16 2 C 0.00 0.24 4.99 84.86 0.42 0.66 16 3 Si 0.90 42.94 26.40 68.60 1.81 44.75 16 4 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 5 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 6 H -0.24 -10.08 6.02 99.48 0.60 -9.48 16 7 C -0.23 -12.10 7.94 84.03 0.67 -11.43 16 8 H 0.03 2.06 7.34 -2.91 -0.02 2.04 16 9 N -0.58 -25.75 1.91 -678.31 -1.30 -27.05 16 10 C 0.18 7.54 4.25 85.63 0.36 7.90 16 11 C 0.21 8.42 6.38 42.38 0.27 8.69 16 12 C -0.33 -12.06 9.67 22.53 0.22 -11.84 16 13 C 0.52 19.01 7.51 84.34 0.63 19.64 16 14 O -0.58 -22.88 17.46 -5.64 -0.10 -22.98 16 15 N -0.46 -14.42 2.82 -481.02 -1.36 -15.77 16 16 C 0.03 0.54 10.46 83.94 0.88 1.42 16 17 C -0.19 -2.74 11.12 67.89 0.75 -1.98 16 18 S 0.23 5.30 23.37 -56.49 -1.32 3.98 16 19 C 0.27 9.21 8.32 179.40 1.49 10.71 16 20 N -0.51 -21.28 10.36 -182.43 -1.89 -23.17 16 21 C 0.16 6.02 3.41 45.71 0.16 6.18 16 22 C -0.13 -4.59 6.42 31.70 0.20 -4.39 16 23 C -0.11 -3.13 6.91 31.91 0.22 -2.91 16 24 C -0.11 -3.59 6.83 31.67 0.22 -3.37 16 25 C -0.13 -4.62 6.19 31.32 0.19 -4.42 16 26 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 27 H 0.06 2.69 5.00 -2.39 -0.01 2.68 16 28 H 0.09 3.22 7.82 -2.39 -0.02 3.20 16 29 H 0.17 5.39 7.98 -2.91 -0.02 5.37 16 30 H 0.21 3.40 8.00 -2.91 -0.02 3.38 16 31 H 0.25 0.77 8.06 -2.91 -0.02 0.75 16 32 H 0.07 2.42 7.91 -2.39 -0.02 2.40 16 33 H 0.05 2.18 7.03 -2.38 -0.02 2.17 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.04 1.57 6.98 -2.38 -0.02 1.55 16 Total: -1.00 -72.96 340.21 3.79 -69.17 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.95 Total: 11.29 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 6.69 Total: 14.86 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -4.24 Total: -121.07 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.10 Total: -22.98 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.81 Total: 44.75 kcal Atomic # 16 Polarization: 5.30 SS G_CDS: -1.32 Total: 3.98 kcal Total: -72.96 3.79 -69.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156699722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.165 kcal (2) G-P(sol) polarization free energy of solvation -72.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds