Wall clock time and date at job start Fri Apr 10 2020 23:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99656 * 2 1 4 4 H 1.48499 * 109.46804 * 275.17192 * 3 2 1 5 5 H 1.48493 * 109.47286 * 35.17385 * 3 2 1 6 6 H 1.48501 * 109.46588 * 155.17620 * 3 2 1 7 7 C 1.38807 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00134 * 336.33578 * 7 2 1 9 9 N 1.36937 * 119.99838 * 156.33755 * 7 2 1 10 10 C 1.46503 * 119.99943 * 321.71135 * 9 7 2 11 11 C 1.50699 * 109.46874 * 270.00305 * 10 9 7 12 12 N 1.30931 * 126.40480 * 89.72140 * 11 10 9 13 13 C 1.35394 * 105.57639 * 179.85865 * 12 11 10 14 14 C 1.47727 * 126.44498 * 180.14649 * 13 12 11 15 15 C 1.34865 * 125.27228 * 179.97438 * 14 13 12 16 16 C 1.37825 * 114.72306 * 179.79285 * 15 14 13 17 17 C 1.33714 * 115.07168 * 0.49227 * 16 15 14 18 18 S 1.75864 * 109.74743 * 359.73473 * 17 16 15 19 19 N 1.31038 * 107.10410 * 0.39737 * 13 12 11 20 20 O 1.21293 * 110.04280 * 359.74854 * 19 13 12 21 21 C 1.46503 * 120.00316 * 141.71768 * 9 7 2 22 22 C 1.55229 * 110.58052 * 59.17127 * 21 9 7 23 23 C 1.54896 * 102.58816 * 203.34071 * 22 21 9 24 24 C 1.54271 * 104.30971 * 37.93602 * 23 22 21 25 25 C 1.53872 * 106.59902 * 336.32270 * 24 23 22 26 26 H 0.96999 * 120.00204 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47119 * 30.00538 * 10 9 7 28 28 H 1.08994 * 109.47162 * 150.00408 * 10 9 7 29 29 H 1.08000 * 122.63353 * 359.97411 * 15 14 13 30 30 H 1.07997 * 122.45987 * 180.22855 * 16 15 14 31 31 H 1.08000 * 125.12638 * 179.73066 * 17 16 15 32 32 H 1.08996 * 110.43486 * 181.76794 * 21 9 7 33 33 H 1.09008 * 110.89764 * 85.05677 * 22 21 9 34 34 H 1.09001 * 110.76985 * 321.57598 * 22 21 9 35 35 H 1.08994 * 110.48696 * 279.19433 * 23 22 21 36 36 H 1.09003 * 110.48494 * 156.67869 * 23 22 21 37 37 H 1.08996 * 110.02887 * 95.60622 * 24 23 22 38 38 H 1.08993 * 110.03220 * 216.98933 * 24 23 22 39 39 H 1.09007 * 110.03203 * 119.28441 * 25 24 23 40 40 H 1.08999 * 110.03477 * 240.66904 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3883 2.1095 -1.3944 5 1 1.5066 2.6186 0.8065 6 1 3.5981 1.4111 0.5878 7 6 2.0103 -1.2021 -0.0005 8 1 1.5384 -2.0983 0.3745 9 7 3.2933 -1.2517 -0.4765 10 6 3.6701 -0.4607 -1.6507 11 6 3.4436 -1.2748 -2.8985 12 7 2.3416 -1.3258 -3.6036 13 6 2.6026 -2.1754 -4.6251 14 6 1.6706 -2.5639 -5.7033 15 6 1.9562 -3.4134 -6.7111 16 6 0.9218 -3.6255 -7.5969 17 6 -0.2011 -2.9508 -7.3288 18 16 0.0187 -1.9848 -5.8758 19 7 3.8357 -2.5922 -4.4741 20 8 4.3287 -2.0841 -3.4892 21 6 4.2892 -2.0959 0.1882 22 6 3.8343 -3.5801 0.1874 23 6 4.6182 -4.1741 1.3841 24 6 4.6026 -3.0533 2.4441 25 6 4.3934 -1.7320 1.6838 26 1 -0.4850 0.8400 0.0004 27 1 3.0615 0.4427 -1.6907 28 1 4.7228 -0.1868 -1.5816 29 1 2.9188 -3.8921 -6.8142 30 1 1.0130 -4.2848 -8.4474 31 1 -1.1064 -2.9927 -7.9161 32 1 5.2595 -1.9942 -0.2976 33 1 4.1175 -4.0730 -0.7427 34 1 2.7597 -3.6552 0.3540 35 1 5.6417 -4.4080 1.0913 36 1 4.1177 -5.0650 1.7634 37 1 3.7839 -3.2142 3.1454 38 1 5.5525 -3.0313 2.9781 39 1 3.4731 -1.2516 2.0162 40 1 5.2417 -1.0679 1.8489 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156717609.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:57:24 Heat of formation + Delta-G solvation = 105.468200 kcal Electronic energy + Delta-G solvation = -24560.810681 eV Core-core repulsion = 21084.532359 eV Total energy + Delta-G solvation = -3476.278321 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -46.43029 -39.53826 -38.91869 -36.97467 -36.31973 -34.15044 -33.13624 -30.58273 -29.39488 -29.24962 -28.09360 -26.13878 -24.98507 -24.34399 -22.98061 -21.37448 -20.68985 -20.03002 -19.55537 -19.16262 -18.41534 -17.61007 -17.34444 -16.98494 -16.66718 -16.00288 -15.72606 -14.94296 -14.84888 -14.65470 -14.43357 -14.34485 -14.07619 -13.74651 -13.69275 -13.28877 -13.09479 -12.88440 -12.78037 -12.54226 -12.19935 -12.11483 -12.02741 -11.90452 -11.79950 -11.73551 -11.69290 -11.42567 -11.12690 -11.10300 -10.62237 -9.65838 -9.59930 -8.94580 -8.20119 -5.63783 -0.58033 0.29911 0.39301 0.98053 1.25092 1.33559 1.45224 1.53908 1.85763 1.89470 2.42306 2.54257 2.97612 3.11923 3.26532 3.89979 3.94784 4.03082 4.10255 4.18169 4.29251 4.42355 4.44999 4.53614 4.60014 4.66440 4.74559 4.82841 4.87937 4.97266 4.99931 5.01373 5.11623 5.20259 5.21693 5.32312 5.38284 5.46471 5.59020 5.65525 5.93967 6.22951 6.87693 7.14434 7.54207 7.90645 8.98252 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.004538 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.353756 B = 6168.812159 C = 7239.035208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.919 3.081 4 H -0.275 1.275 5 H -0.306 1.306 6 H -0.230 1.230 7 C -0.253 4.253 8 H 0.037 0.963 9 N -0.578 5.578 10 C 0.207 3.793 11 C 0.192 3.808 12 N -0.505 5.505 13 C 0.220 3.780 14 C -0.165 4.165 15 C -0.085 4.085 16 C -0.141 4.141 17 C -0.187 4.187 18 S 0.138 5.862 19 N -0.393 5.393 20 O 0.074 5.926 21 C 0.160 3.840 22 C -0.135 4.135 23 C -0.111 4.111 24 C -0.114 4.114 25 C -0.131 4.131 26 H 0.263 0.737 27 H 0.082 0.918 28 H 0.132 0.868 29 H 0.152 0.848 30 H 0.185 0.815 31 H 0.208 0.792 32 H 0.095 0.905 33 H 0.047 0.953 34 H 0.035 0.965 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.083 0.917 39 H 0.050 0.950 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.444 -5.210 -9.453 13.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.235 1.235 6 H -0.152 1.152 7 C -0.383 4.383 8 H 0.055 0.945 9 N -0.298 5.298 10 C 0.077 3.923 11 C -0.032 4.032 12 N -0.239 5.239 13 C -0.050 4.050 14 C -0.284 4.284 15 C -0.121 4.121 16 C -0.170 4.170 17 C -0.324 4.324 18 S 0.403 5.597 19 N -0.104 5.104 20 O 0.017 5.983 21 C 0.055 3.945 22 C -0.174 4.174 23 C -0.149 4.149 24 C -0.152 4.152 25 C -0.170 4.170 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.150 0.850 29 H 0.170 0.830 30 H 0.203 0.797 31 H 0.225 0.775 32 H 0.113 0.887 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.356 -4.568 -9.172 12.614 hybrid contribution 0.268 -0.068 -0.441 0.520 sum 7.624 -4.636 -9.613 13.116 Atomic orbital electron populations 1.70031 1.08087 1.27602 1.51777 1.26035 0.95392 1.01174 0.97495 0.86209 0.81195 0.80383 0.77642 1.20223 1.23465 1.15250 1.18227 0.88494 0.93011 1.38561 0.94486 1.44384 1.08683 1.52364 1.24382 1.20679 1.03248 0.91121 0.77238 1.31324 0.82774 0.92296 0.96772 1.72205 1.25633 1.20300 1.05724 1.23270 0.90828 0.95398 0.95543 1.21525 0.98030 1.09464 0.99401 1.20648 1.02123 0.96605 0.92678 1.20343 0.91273 1.03246 1.02132 1.26489 1.04529 1.01407 0.99932 1.84951 1.05404 1.45289 1.24074 1.74793 1.11016 1.20128 1.04461 1.85195 1.39608 1.44997 1.28535 1.21816 0.90997 0.88869 0.92830 1.22848 0.99192 0.97436 0.97973 1.22237 1.00421 0.97583 0.94696 1.22021 1.01713 0.93982 0.97447 1.22439 1.01514 0.97805 0.95280 0.92780 0.90064 0.85003 0.83017 0.79739 0.77494 0.88653 0.93465 0.94643 0.89772 0.92028 0.93278 0.89814 0.93157 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.26 13.97 21.65 0.30 -56.96 16 2 C 0.00 -0.13 5.27 84.86 0.45 0.31 16 3 Si 0.92 42.13 25.19 68.60 1.73 43.86 16 4 H -0.27 -12.26 6.65 99.48 0.66 -11.60 16 5 H -0.31 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.23 -9.30 7.11 99.48 0.71 -8.60 16 7 C -0.25 -13.54 8.21 84.03 0.69 -12.85 16 8 H 0.04 2.29 6.83 -2.91 -0.02 2.27 16 9 N -0.58 -24.92 2.08 -675.71 -1.41 -26.32 16 10 C 0.21 8.12 5.13 85.63 0.44 8.56 16 11 C 0.19 8.00 8.07 88.35 0.71 8.72 16 12 N -0.50 -23.48 11.58 -302.26 -3.50 -26.98 16 13 C 0.22 9.15 8.02 136.95 1.10 10.25 16 14 C -0.17 -5.81 6.44 24.00 0.15 -5.66 16 15 C -0.08 -2.30 10.05 21.40 0.22 -2.09 16 16 C -0.14 -2.80 10.16 21.14 0.21 -2.58 16 17 C -0.19 -3.78 11.23 66.79 0.75 -3.03 16 18 S 0.14 4.32 23.32 -56.49 -1.32 3.00 16 19 N -0.39 -15.52 12.16 -58.77 -0.71 -16.24 16 20 O 0.07 2.84 11.29 74.40 0.84 3.68 16 21 C 0.16 5.59 3.39 46.19 0.16 5.75 16 22 C -0.14 -4.81 6.47 32.01 0.21 -4.60 16 23 C -0.11 -3.01 6.82 31.67 0.22 -2.79 16 24 C -0.11 -3.08 6.80 31.32 0.21 -2.87 16 25 C -0.13 -4.29 6.41 31.32 0.20 -4.09 16 26 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 27 H 0.08 3.53 3.46 -2.39 -0.01 3.53 16 28 H 0.13 3.82 7.93 -2.39 -0.02 3.80 16 29 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 30 H 0.19 2.17 8.06 -2.91 -0.02 2.15 16 31 H 0.21 2.51 8.06 -2.91 -0.02 2.49 16 32 H 0.10 2.75 7.84 -2.39 -0.02 2.73 16 33 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.03 1.54 6.58 -2.39 -0.02 1.52 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.05 2.02 6.95 -2.38 -0.02 2.01 16 40 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -70.48 343.87 2.67 -67.82 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 1.02 Total: 15.11 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 5.72 Total: -6.97 kcal Atomic # 7 Polarization: -121.18 SS G_CDS: -5.32 Total: -126.50 kcal Atomic # 8 Polarization: 2.84 SS G_CDS: 0.84 Total: 3.68 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.73 Total: 43.86 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -1.32 Total: 3.00 kcal Total: -70.48 2.67 -67.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156717609.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.285 kcal (2) G-P(sol) polarization free energy of solvation -70.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds