Wall clock time and date at job start Fri Apr 10 2020 23:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35916 * 116.99922 * 2 1 4 4 C 1.37616 * 120.13358 * 359.97438 * 3 2 1 5 5 C 1.39149 * 120.86746 * 179.97438 * 4 3 2 6 6 C 1.37815 * 120.81878 * 0.04844 * 5 4 3 7 7 N 1.39657 * 120.17521 * 179.97438 * 6 5 4 8 8 C 1.38217 * 119.99979 * 353.84479 * 7 6 5 9 9 C 1.39035 * 120.00155 * 299.80528 * 8 7 6 10 10 H 1.08007 * 119.99911 * 158.63526 * 9 8 7 11 11 C 1.40831 * 120.00023 * 338.63396 * 9 8 7 12 12 N 1.30342 * 120.00165 * 350.86987 * 11 9 8 13 13 Si 1.86804 * 120.00248 * 170.86648 * 11 9 8 14 14 H 1.48507 * 109.46831 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47330 * 120.00192 * 13 11 9 16 16 H 1.48498 * 109.46927 * 240.00235 * 13 11 9 17 17 C 1.41187 * 119.99873 * 119.80134 * 8 7 6 18 18 C 1.43198 * 120.00121 * 185.26474 * 17 8 7 19 19 N 9.13998 * 90.64928 * 4.74906 * 2 1 3 20 20 C 1.43206 * 120.00122 * 5.26326 * 17 8 7 21 21 N 8.13157 * 113.81140 * 22.92512 * 2 1 3 22 22 C 1.41093 * 119.65351 * 359.97438 * 6 5 4 23 23 C 1.40408 * 121.18247 * 179.97438 * 22 6 5 24 24 C 1.36149 * 119.67914 * 180.02562 * 23 22 6 25 25 C 1.39346 * 120.96122 * 0.02562 * 24 23 22 26 26 C 1.36132 * 120.95251 * 359.97438 * 25 24 23 27 27 C 1.40476 * 119.67333 * 359.73067 * 26 25 24 28 28 H 1.08996 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46768 * 60.00120 * 1 2 3 30 30 H 1.09002 * 109.47097 * 300.00611 * 1 2 3 31 31 H 1.08003 * 119.56401 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.58557 * 180.02562 * 5 4 3 33 33 H 0.96996 * 120.00248 * 173.85108 * 7 6 5 34 34 H 0.96998 * 119.99760 * 185.04807 * 12 11 9 35 35 H 1.07995 * 120.16122 * 0.03406 * 23 22 6 36 36 H 1.08004 * 119.52047 * 179.97438 * 24 23 22 37 37 H 1.08000 * 119.52530 * 179.97438 * 25 24 23 38 38 H 1.07997 * 120.16820 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2992 2.3669 -0.0005 5 6 1.9150 3.6147 0.0000 6 6 3.2888 3.7241 0.0001 7 7 3.8927 4.9834 0.0001 8 6 3.1185 6.1211 -0.1284 9 6 2.3377 6.3062 -1.2638 10 1 1.4938 6.9797 -1.2350 11 6 2.6473 5.6156 -2.4515 12 7 3.7607 4.9443 -2.5437 13 14 1.4622 5.6617 -3.8948 14 1 0.2797 6.4862 -3.5381 15 1 2.1418 6.2543 -5.0746 16 1 1.0227 4.2807 -4.2186 17 6 3.1204 7.0953 0.8935 18 6 2.2350 8.2180 0.8142 19 7 1.5326 9.1080 0.7567 20 6 4.0078 6.9608 2.0094 21 7 4.7120 6.8518 2.8979 22 6 4.0820 2.5573 0.0001 23 6 5.4841 2.6314 -0.0003 24 6 6.2197 1.4857 -0.0008 25 6 5.6016 0.2369 -0.0013 26 6 4.2447 0.1273 -0.0009 27 6 3.4532 1.2879 0.0059 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 0.5139 0.8899 31 1 0.2210 2.3047 -0.0014 32 1 1.3088 4.5085 0.0000 33 1 4.8555 5.0596 0.0901 34 1 4.0087 4.5297 -3.3848 35 1 5.9767 3.5924 -0.0002 36 1 7.2981 1.5457 -0.0015 37 1 6.2077 -0.6570 -0.0021 38 1 3.7789 -0.8471 -0.0009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169083926.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:56:59 Heat of formation + Delta-G solvation = 57.286437 kcal Electronic energy + Delta-G solvation = -25696.266274 eV Core-core repulsion = 22082.454684 eV Total energy + Delta-G solvation = -3613.811591 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62154 -39.67460 -38.95039 -37.25632 -36.49786 -36.11496 -34.86973 -33.08303 -31.47528 -30.98115 -28.83397 -28.75805 -27.64505 -24.28367 -23.94737 -23.16313 -21.99257 -20.47070 -19.08769 -18.87604 -18.63017 -17.98227 -17.53776 -16.93132 -16.51421 -16.46961 -15.79688 -15.33443 -15.08337 -14.75287 -14.56674 -14.45973 -14.29420 -13.93709 -13.87199 -13.66000 -13.45834 -13.36982 -13.35030 -13.19442 -13.11516 -12.76554 -12.66569 -12.52877 -12.40920 -12.28947 -11.96316 -11.88670 -11.60214 -11.42099 -10.68917 -10.08375 -9.49909 -9.45756 -9.02641 -7.52631 -7.09937 -0.11934 0.17446 0.63766 1.35725 1.38266 1.52025 1.54854 2.04081 2.08450 2.23147 2.29466 2.35026 2.51632 2.63810 2.83539 3.33004 3.44344 3.86791 3.90485 4.02101 4.11288 4.22657 4.32920 4.48933 4.50506 4.58254 4.65631 4.66994 4.72673 4.74222 4.80959 4.95428 5.20755 5.26296 5.39648 5.46994 5.53567 5.60756 5.70807 5.73483 5.86204 6.09102 6.16493 6.25339 6.61692 6.86978 7.01208 7.22402 7.35853 7.75754 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010369 B = 0.005616 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.779865 B = 4984.945738 C = 5823.527380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.329 6.329 3 C 0.058 3.942 4 C -0.162 4.162 5 C -0.188 4.188 6 C 0.226 3.774 7 N -0.654 5.654 8 C 0.380 3.620 9 C -0.373 4.373 10 H 0.103 0.897 11 C 0.051 3.949 12 N -0.714 5.714 13 Si 0.972 3.028 14 H -0.254 1.254 15 H -0.256 1.256 16 H -0.259 1.259 17 C -0.329 4.329 18 C 0.331 3.669 19 N -0.558 5.558 20 C 0.316 3.684 21 N -0.560 5.560 22 C -0.076 4.076 23 C -0.105 4.105 24 C -0.125 4.125 25 C -0.116 4.116 26 C -0.109 4.109 27 C -0.050 4.050 28 H 0.121 0.879 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.141 0.859 32 H 0.124 0.876 33 H 0.399 0.601 34 H 0.310 0.690 35 H 0.121 0.879 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.081 -15.507 -6.278 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.244 6.244 3 C 0.012 3.988 4 C -0.181 4.181 5 C -0.212 4.212 6 C 0.123 3.877 7 N -0.275 5.275 8 C 0.274 3.726 9 C -0.400 4.400 10 H 0.121 0.879 11 C -0.181 4.181 12 N -0.331 5.331 13 Si 0.791 3.209 14 H -0.178 1.178 15 H -0.180 1.180 16 H -0.183 1.183 17 C -0.349 4.349 18 C 0.024 3.976 19 N -0.242 5.242 20 C 0.011 3.989 21 N -0.243 5.243 22 C -0.079 4.079 23 C -0.123 4.123 24 C -0.144 4.144 25 C -0.134 4.134 26 C -0.127 4.127 27 C -0.051 4.051 28 H 0.139 0.861 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.159 0.841 32 H 0.142 0.858 33 H 0.236 0.764 34 H 0.123 0.877 35 H 0.139 0.861 36 H 0.162 0.838 37 H 0.168 0.832 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.919 -14.612 -5.111 15.507 hybrid contribution -0.253 0.402 -0.794 0.925 sum -1.171 -14.210 -5.904 15.432 Atomic orbital electron populations 1.23241 0.77196 1.05149 1.01701 1.85917 1.22607 1.26208 1.89639 1.18633 0.91095 0.84718 1.04396 1.20955 1.00336 0.91029 1.05809 1.20482 0.92893 0.97977 1.09850 1.17470 0.91785 0.83724 0.94704 1.41256 1.08354 1.01314 1.76600 1.16696 0.85291 0.82276 0.88302 1.20475 1.10512 1.16303 0.92681 0.87860 1.26909 0.97049 0.91257 1.02864 1.69471 1.19002 1.15349 1.29328 0.85210 0.79052 0.80032 0.76599 1.17751 1.18041 1.18296 1.13060 1.16309 1.03515 1.01969 1.24826 0.90876 0.90824 0.91051 1.81011 1.16648 1.14386 1.12124 1.25422 0.91140 0.91233 0.91151 1.81172 1.17180 1.12322 1.13661 1.17595 0.93939 0.90867 1.05455 1.20888 0.92068 0.99486 0.99907 1.21053 1.00971 0.91949 1.00384 1.21114 0.94465 0.98368 0.99436 1.21049 0.94213 0.97299 1.00176 1.17396 0.90740 0.93379 1.03585 0.86121 0.92506 0.92439 0.84097 0.85831 0.76408 0.87734 0.86146 0.83788 0.83186 0.84435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.51 16 2 O -0.33 -8.96 9.71 -92.60 -0.90 -9.86 16 3 C 0.06 1.83 6.70 22.78 0.15 1.99 16 4 C -0.16 -5.18 9.02 22.34 0.20 -4.98 16 5 C -0.19 -6.89 8.56 22.39 0.19 -6.70 16 6 C 0.23 8.42 5.19 38.49 0.20 8.62 16 7 N -0.65 -25.11 3.25 -179.01 -0.58 -25.69 16 8 C 0.38 15.58 4.97 39.05 0.19 15.78 16 9 C -0.37 -14.78 6.88 23.10 0.16 -14.62 16 10 H 0.10 4.21 7.02 -2.91 -0.02 4.19 16 11 C 0.05 1.83 4.79 85.55 0.41 2.24 16 12 N -0.71 -25.79 11.03 21.98 0.24 -25.54 16 13 Si 0.97 28.85 29.58 68.60 2.03 30.88 16 14 H -0.25 -7.80 7.11 99.48 0.71 -7.09 16 15 H -0.26 -7.34 7.11 99.48 0.71 -6.63 16 16 H -0.26 -7.59 7.11 99.48 0.71 -6.88 16 17 C -0.33 -14.52 5.88 -20.06 -0.12 -14.64 16 18 C 0.33 15.23 13.91 88.34 1.23 16.46 16 19 N -0.56 -26.64 18.53 18.99 0.35 -26.29 16 20 C 0.32 14.50 14.82 88.30 1.31 15.81 16 21 N -0.56 -26.66 18.56 19.04 0.35 -26.31 16 22 C -0.08 -2.64 5.75 -21.20 -0.12 -2.76 16 23 C -0.11 -3.25 9.49 22.31 0.21 -3.03 16 24 C -0.13 -3.16 9.95 22.05 0.22 -2.94 16 25 C -0.12 -2.73 9.95 22.05 0.22 -2.51 16 26 C -0.11 -3.00 9.56 22.32 0.21 -2.79 16 27 C -0.05 -1.65 5.75 -21.23 -0.12 -1.77 16 28 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.00 7.65 -2.38 -0.02 0.98 16 30 H 0.06 1.01 7.66 -2.39 -0.02 0.99 16 31 H 0.14 3.72 6.23 -2.91 -0.02 3.70 16 32 H 0.12 4.71 6.12 -2.91 -0.02 4.69 16 33 H 0.40 14.96 6.91 -92.71 -0.64 14.32 16 34 H 0.31 10.16 8.29 -92.71 -0.77 9.39 16 35 H 0.12 3.63 6.43 -2.91 -0.02 3.61 16 36 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 37 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 38 H 0.14 3.33 7.60 -2.91 -0.02 3.31 16 Total: -1.00 -53.53 341.12 7.67 -45.86 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: 0.51 Total: 31.29 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 5.66 Total: 5.66 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: 0.37 Total: -103.83 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.90 Total: -9.86 kcal Atomic # 14 Polarization: 28.85 SS G_CDS: 2.03 Total: 30.88 kcal Total: -53.53 7.67 -45.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083926.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.151 kcal (2) G-P(sol) polarization free energy of solvation -53.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds