Wall clock time and date at job start Fri Apr 10 2020 23:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00269 * 2 1 4 4 H 1.48501 * 109.46836 * 239.99502 * 3 2 1 5 5 H 1.48498 * 109.47038 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46963 * 120.00003 * 3 2 1 7 7 C 1.37878 * 119.99368 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99507 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00218 * 0.02562 * 7 2 1 10 10 C 1.53129 * 109.52196 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.27575 * 182.37510 * 10 9 7 12 12 N 1.46852 * 109.52180 * 59.18601 * 11 10 9 13 13 C 1.46900 * 110.99829 * 174.15724 * 12 11 10 14 14 C 1.50702 * 109.46767 * 170.00350 * 13 12 11 15 15 N 1.30238 * 126.09780 * 269.97067 * 14 13 12 16 16 N 1.39873 * 110.08183 * 180.02562 * 15 14 13 17 17 H 0.97005 * 125.45507 * 180.02562 * 16 15 14 18 18 C 1.37042 * 109.07518 * 0.02562 * 16 15 14 19 19 C 1.39285 * 133.80025 * 180.02562 * 18 16 15 20 20 C 1.37694 * 119.72723 * 179.97438 * 19 18 16 21 21 Cl 1.73600 * 119.67977 * 179.97438 * 20 19 18 22 22 C 1.39088 * 120.63799 * 0.03341 * 20 19 18 23 23 C 1.36417 * 120.62563 * 359.94327 * 22 20 19 24 24 C 1.39936 * 119.79338 * 0.04088 * 23 22 20 25 25 C 1.46841 * 111.19677 * 298.25442 * 12 11 10 26 26 C 1.53047 * 109.52493 * 61.74097 * 25 12 11 27 27 H 0.97008 * 119.99723 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.52586 * 300.12658 * 9 7 2 29 29 H 1.09002 * 109.49731 * 62.44297 * 10 9 7 30 30 H 1.08995 * 109.53643 * 302.34080 * 10 9 7 31 31 H 1.08995 * 109.46490 * 299.16623 * 11 10 9 32 32 H 1.09004 * 109.44779 * 179.18926 * 11 10 9 33 33 H 1.08993 * 109.46923 * 49.99925 * 13 12 11 34 34 H 1.09002 * 109.46774 * 289.99812 * 13 12 11 35 35 H 1.08003 * 120.13733 * 359.71686 * 19 18 16 36 36 H 1.08004 * 119.69005 * 179.97438 * 22 20 19 37 37 H 1.07998 * 120.10770 * 180.02562 * 23 22 20 38 38 H 1.09001 * 109.46347 * 181.75595 * 25 12 11 39 39 H 1.09002 * 109.46694 * 301.72569 * 25 12 11 40 40 H 1.09001 * 109.49817 * 180.87979 * 26 25 12 41 41 H 1.09001 * 109.50082 * 60.76314 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4991 0.0005 10 6 2.2448 -3.6640 0.0005 11 6 1.4747 -4.9852 -0.0593 12 7 0.6530 -5.0195 -1.2759 13 6 0.0066 -6.3287 -1.4377 14 6 -1.0112 -6.2527 -2.5466 15 7 -2.2676 -5.9362 -2.4145 16 7 -2.9050 -5.9708 -3.6591 17 1 -3.8413 -5.7728 -3.8175 18 6 -1.9946 -6.3294 -4.6187 19 6 -2.0698 -6.5166 -5.9968 20 6 -0.9441 -6.8871 -6.6979 21 17 -1.0393 -7.1208 -8.4155 22 6 0.2682 -7.0773 -6.0431 23 6 0.3648 -6.8990 -4.6941 24 6 -0.7653 -6.5221 -3.9598 25 6 -0.3406 -3.9384 -1.2762 26 6 0.3752 -2.5858 -1.2525 27 1 -0.4850 0.8401 -0.0004 28 1 0.6218 -2.5566 0.8888 29 1 2.8425 -3.6322 0.9115 30 1 2.8994 -3.5846 -0.8673 31 1 0.8312 -5.0705 0.8162 32 1 2.1802 -5.8161 -0.0740 33 1 -0.4893 -6.6064 -0.5077 34 1 0.7591 -7.0772 -1.6859 35 1 -3.0080 -6.3757 -6.5129 36 1 1.1415 -7.3683 -6.6080 37 1 1.3104 -7.0485 -4.1942 38 1 -0.9540 -4.0090 -2.1745 39 1 -0.9758 -4.0285 -0.3950 40 1 -0.3629 -1.7838 -1.2370 41 1 0.9999 -2.4892 -2.1405 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238000497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:59:12 Heat of formation + Delta-G solvation = 76.170304 kcal Electronic energy + Delta-G solvation = -24102.920013 eV Core-core repulsion = 20623.327534 eV Total energy + Delta-G solvation = -3479.592480 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.115 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.47949 -38.33833 -37.67311 -36.26186 -34.36115 -32.67482 -31.18113 -29.94957 -29.67505 -29.62026 -26.99513 -24.58506 -23.31922 -22.42988 -22.11046 -21.59489 -19.66525 -18.58103 -18.06490 -17.09571 -16.38971 -15.95616 -15.64433 -14.92027 -14.68675 -14.45152 -14.34847 -14.26207 -13.73559 -13.14808 -12.95033 -12.92552 -12.58628 -12.36473 -12.08544 -11.86894 -11.61053 -11.44684 -11.22121 -11.21192 -10.91963 -10.81441 -10.68248 -10.45337 -10.25796 -10.16127 -9.95510 -9.40806 -8.93903 -8.73736 -8.63437 -8.25912 -8.22669 -7.77293 -5.93765 -3.99210 0.61631 1.23703 1.77853 2.26299 2.62613 3.34955 3.39490 3.42190 3.47190 4.28648 4.38603 4.47029 4.48507 4.60805 4.83391 5.05312 5.24107 5.33478 5.36303 5.47049 5.57224 5.70438 5.79133 5.89762 5.92704 6.12062 6.12963 6.22774 6.27609 6.33722 6.50394 6.64705 6.66378 6.87738 7.08489 7.11988 7.16152 7.44457 7.49036 7.60734 7.65865 7.84363 8.08102 8.19195 8.51550 9.04360 9.64976 11.12280 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.016166 B = 0.003049 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.651469 B = 9181.278443 C = 9733.854014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.061 3.939 12 N -0.527 5.527 13 C 0.127 3.873 14 C 0.122 3.878 15 N -0.238 5.238 16 N -0.507 5.507 17 H 0.441 0.559 18 C 0.138 3.862 19 C -0.139 4.139 20 C 0.015 3.985 21 Cl -0.067 7.067 22 C -0.157 4.157 23 C -0.012 4.012 24 C -0.159 4.159 25 C 0.058 3.942 26 C -0.102 4.102 27 H 0.259 0.741 28 H 0.020 0.980 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.027 0.973 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.055 0.945 39 H 0.025 0.975 40 H 0.091 0.909 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.563 -17.309 -11.389 21.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.143 4.143 11 C -0.067 4.067 12 N -0.254 5.254 13 C -0.002 4.002 14 C -0.056 4.056 15 N -0.052 5.052 16 N -0.221 5.221 17 H 0.285 0.715 18 C 0.021 3.979 19 C -0.162 4.162 20 C -0.014 4.014 21 Cl -0.039 7.039 22 C -0.177 4.177 23 C -0.033 4.033 24 C -0.167 4.167 25 C -0.069 4.069 26 C -0.141 4.141 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.073 0.927 39 H 0.043 0.957 40 H 0.109 0.891 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.372 -16.781 -11.094 20.586 hybrid contribution -0.246 0.788 -0.247 0.861 sum -4.618 -15.994 -11.340 20.142 Atomic orbital electron populations 1.69877 1.05873 1.26351 1.50995 1.24972 0.94825 0.98995 0.95241 0.86702 0.79623 0.83357 0.78557 1.20310 1.21422 1.20370 1.21171 0.92831 0.90683 1.50204 0.92786 1.18680 0.92675 0.91757 0.93931 1.21675 0.98685 0.93568 1.00419 1.22155 0.95726 0.99614 0.89165 1.62229 1.23357 1.00971 1.38798 1.20580 0.92519 0.94352 0.92751 1.23433 0.91977 0.96784 0.93396 1.76709 1.08090 1.18308 1.02105 1.45917 1.11217 1.62454 1.02489 0.71457 1.18540 0.90512 0.98066 0.90803 1.19719 0.98907 1.07430 0.90118 1.20557 0.94806 1.01429 0.84618 1.98374 1.98589 1.95281 1.11610 1.20504 0.96614 1.06146 0.94458 1.20334 0.97188 0.93266 0.92495 1.19801 0.94141 1.09887 0.92848 1.22331 0.92890 0.92740 0.98977 1.21653 1.00109 0.92965 0.99339 0.93100 0.96164 0.93006 0.92363 0.95459 0.92063 0.93096 0.88811 0.84733 0.84516 0.84094 0.92680 0.95713 0.89114 0.93961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.72 11.37 55.43 0.63 -25.09 16 2 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.07 8.56 -34.44 -0.29 -14.36 16 8 H 0.05 1.46 7.75 -52.48 -0.41 1.06 16 9 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 10 C -0.11 -2.16 5.32 -26.64 -0.14 -2.30 16 11 C 0.06 1.04 5.42 -3.83 -0.02 1.02 16 12 N -0.53 -9.12 4.80 -236.11 -1.13 -10.26 16 13 C 0.13 1.78 5.87 -4.97 -0.03 1.75 16 14 C 0.12 1.79 5.21 -80.18 -0.42 1.37 16 15 N -0.24 -3.59 11.62 34.84 0.40 -3.19 16 16 N -0.51 -6.29 7.37 32.36 0.24 -6.05 16 17 H 0.44 4.05 8.96 -182.76 -1.64 2.41 16 18 C 0.14 1.72 7.33 -84.18 -0.62 1.10 16 19 C -0.14 -1.48 9.84 -39.39 -0.39 -1.86 16 20 C 0.02 0.16 6.31 -39.47 -0.25 -0.09 16 21 Cl -0.07 -0.63 28.93 -51.86 -1.50 -2.13 16 22 C -0.16 -1.59 9.74 -39.92 -0.39 -1.98 16 23 C -0.01 -0.14 10.05 -39.60 -0.40 -0.53 16 24 C -0.16 -2.12 6.33 -105.20 -0.67 -2.78 16 25 C 0.06 1.18 4.95 -3.83 -0.02 1.16 16 26 C -0.10 -2.47 5.12 -26.65 -0.14 -2.61 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 33 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.05 1.12 5.97 -51.93 -0.31 0.81 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.09 2.46 6.17 -51.93 -0.32 2.14 16 41 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 347.03 15.07 5.23 5.23 Total: -1.00 -30.25 347.03 -12.09 -42.34 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.88 Total: 0.24 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -4.06 Total: -17.54 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.14 Total: -44.59 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.25 -12.09 -42.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238000497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.515 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds