Wall clock time and date at job start Fri Apr 10 2020 23:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.46850 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.46603 * 180.02562 * 9 8 6 11 11 C 1.53004 * 109.46901 * 179.97438 * 10 9 8 12 12 F 1.39902 * 109.47069 * 59.99657 * 11 10 9 13 13 F 1.39901 * 109.47223 * 179.97438 * 11 10 9 14 14 F 1.39905 * 109.47272 * 300.00159 * 11 10 9 15 15 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 16 16 C 1.46491 * 126.04623 * 179.87688 * 15 4 3 17 17 C 1.50702 * 109.46957 * 269.71277 * 16 15 4 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48504 * 109.47196 * 60.00645 * 21 19 17 23 23 H 1.48504 * 109.46887 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47679 * 300.00280 * 21 19 17 25 25 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 27 27 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 28 28 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 29 29 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 30 30 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 31 31 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 32 32 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 33 33 H 1.09005 * 109.47406 * 299.99990 * 9 8 6 34 34 H 1.08990 * 109.47361 * 60.00544 * 9 8 6 35 35 H 1.08995 * 109.46988 * 299.99815 * 10 9 8 36 36 H 1.09002 * 109.46909 * 60.00371 * 10 9 8 37 37 H 1.09004 * 109.47166 * 149.71543 * 16 15 4 38 38 H 1.08994 * 109.47507 * 29.71250 * 16 15 4 39 39 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 6 5.4088 5.2178 0.0307 10 6 6.6502 6.1122 0.0388 11 6 6.2208 7.5807 0.0423 12 9 5.4524 7.8390 1.1825 13 9 7.3558 8.3985 0.0502 14 9 5.4613 7.8473 -1.1020 15 7 3.6093 -0.6405 0.0013 16 6 4.7870 -1.5116 0.0026 17 6 5.1921 -1.8109 -1.4178 18 1 4.6288 -1.3935 -2.2393 19 6 6.2856 -2.6124 -1.6685 20 7 6.9718 -3.1203 -0.6681 21 14 6.7923 -2.9770 -3.4290 22 1 7.1127 -1.7052 -4.1255 23 1 7.9891 -3.8562 -3.4277 24 1 5.6777 -3.6601 -4.1337 25 7 2.2731 -1.0608 0.0005 26 1 -0.3634 0.0003 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3633 -0.8901 -0.5136 29 1 1.9901 2.1596 -0.0009 30 1 5.6359 1.1294 0.0155 31 1 6.4297 3.5415 0.9182 32 1 6.4372 3.5481 -0.8617 33 1 4.8172 5.4259 -0.8609 34 1 4.8102 5.4187 0.9191 35 1 7.2421 5.9042 0.9301 36 1 7.2486 5.9112 -0.8499 37 1 4.5494 -2.4431 0.5166 38 1 5.6079 -1.0120 0.5169 39 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000536127359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:59:19 Heat of formation + Delta-G solvation = -134.301932 kcal Electronic energy + Delta-G solvation = -26246.579818 eV Core-core repulsion = 21775.294672 eV Total energy + Delta-G solvation = -4471.285146 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.34583 -47.85833 -47.80896 -40.89682 -39.32862 -35.39142 -34.72192 -33.79090 -32.10289 -30.33634 -29.09710 -28.04305 -26.07146 -24.87556 -22.95937 -22.32038 -21.06775 -19.74630 -19.32669 -18.81082 -18.54370 -17.73725 -16.95697 -16.63337 -16.30558 -16.19114 -15.01701 -14.96458 -14.74864 -14.50808 -14.35790 -14.24731 -14.01110 -13.99116 -13.93435 -13.86887 -13.07059 -12.89858 -12.81156 -12.58757 -12.51911 -12.15837 -12.03173 -11.81725 -11.72030 -11.59651 -11.20248 -11.12652 -10.90839 -10.42404 -10.36543 -9.94541 -9.86419 -9.53237 -8.75660 -7.94596 -7.46788 -6.37221 -4.45929 2.21464 2.46006 2.79826 3.07654 3.14845 3.20056 3.24632 3.51129 3.57797 3.66900 3.76912 3.84063 4.20972 4.41243 4.57125 4.68345 4.95118 4.96193 4.99628 5.06084 5.28249 5.34670 5.63295 5.65651 5.85550 6.01423 6.14577 6.17110 6.24465 6.40317 6.64249 6.79913 7.00965 7.48798 7.54968 7.59623 7.75938 7.87773 8.26286 8.58698 8.67862 9.21789 10.69827 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.011709 B = 0.003099 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.836930 B = 9032.701441 C =10811.869959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.295 4.295 4 C 0.300 3.700 5 N -0.640 5.640 6 C 0.518 3.482 7 O -0.515 6.515 8 C -0.133 4.133 9 C -0.110 4.110 10 C -0.167 4.167 11 C 0.452 3.548 12 F -0.183 7.183 13 F -0.188 7.188 14 F -0.183 7.183 15 N -0.345 5.345 16 C 0.257 3.743 17 C -0.542 4.542 18 H 0.064 0.936 19 C 0.067 3.933 20 N -0.890 5.890 21 Si 0.907 3.093 22 H -0.275 1.275 23 H -0.283 1.283 24 H -0.273 1.273 25 N -0.286 5.286 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.161 0.839 30 H 0.417 0.583 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.056 0.944 38 H 0.044 0.956 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.163 17.883 2.789 18.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.327 4.327 4 C 0.077 3.923 5 N -0.287 5.287 6 C 0.304 3.696 7 O -0.389 6.389 8 C -0.173 4.173 9 C -0.148 4.148 10 C -0.206 4.206 11 C 0.398 3.602 12 F -0.165 7.165 13 F -0.169 7.169 14 F -0.164 7.164 15 N -0.130 5.130 16 C 0.139 3.861 17 C -0.580 4.580 18 H 0.082 0.918 19 C -0.137 4.137 20 N -0.528 5.528 21 Si 0.734 3.266 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.198 1.198 25 N -0.111 5.111 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.179 0.821 30 H 0.253 0.747 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.730 16.824 2.842 17.078 hybrid contribution 1.058 0.455 -0.959 1.499 sum 1.788 17.279 1.883 17.474 Atomic orbital electron populations 1.20019 0.87593 1.02453 1.02042 1.22039 0.96522 0.91058 1.01835 1.21274 0.89085 1.00435 1.21921 1.17955 0.88091 0.83362 1.02849 1.42829 1.08278 1.05696 1.71916 1.20540 0.91501 0.81345 0.76168 1.90655 1.26929 1.73713 1.47601 1.21555 0.96298 0.93828 1.05623 1.21349 0.95579 0.92081 1.05806 1.22921 1.01583 0.88259 1.07807 1.20594 0.74916 0.91103 0.73574 1.93196 1.76489 1.95374 1.51401 1.93188 1.51337 1.76125 1.96247 1.93200 1.76928 1.95239 1.51047 1.49351 1.06532 1.02206 1.54922 1.19606 0.77812 0.89761 0.98887 1.21309 1.13147 1.32207 0.91349 0.91757 1.24936 0.95680 0.94842 0.98199 1.69909 1.19070 1.32673 1.31118 0.86403 0.78119 0.78510 0.83602 1.19990 1.20881 1.19847 1.77359 0.86153 1.21826 1.25764 0.91372 0.91132 0.91505 0.82144 0.74668 0.87941 0.87795 0.89431 0.89458 0.87000 0.86970 0.92578 0.93843 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.00 0.38 -0.55 16 2 C 0.05 1.01 7.21 -82.44 -0.59 0.41 16 3 C -0.30 -5.97 9.58 -39.78 -0.38 -6.35 16 4 C 0.30 6.17 7.66 -153.16 -1.17 5.00 16 5 N -0.64 -10.44 5.41 -11.46 -0.06 -10.50 16 6 C 0.52 7.26 7.79 -10.98 -0.09 7.18 16 7 O -0.51 -8.73 13.11 5.55 0.07 -8.66 16 8 C -0.13 -1.12 5.70 -27.88 -0.16 -1.28 16 9 C -0.11 -0.90 4.26 -26.73 -0.11 -1.02 16 10 C -0.17 -0.99 5.26 -26.73 -0.14 -1.13 16 11 C 0.45 3.75 3.16 37.16 0.12 3.86 16 12 F -0.18 -1.76 16.80 2.25 0.04 -1.73 16 13 F -0.19 -1.65 17.32 2.25 0.04 -1.61 16 14 F -0.18 -1.79 16.80 2.25 0.04 -1.75 16 15 N -0.34 -7.97 3.60 -61.58 -0.22 -8.19 16 16 C 0.26 6.30 6.01 -5.20 -0.03 6.27 16 17 C -0.54 -14.31 9.39 -34.44 -0.32 -14.63 16 18 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 19 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -23.87 13.29 55.43 0.74 -23.14 16 21 Si 0.91 20.29 29.54 -169.99 -5.02 15.27 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 N -0.29 -6.62 12.56 33.65 0.42 -6.20 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.16 3.15 5.83 -52.49 -0.31 2.84 16 30 H 0.42 6.15 7.96 -40.82 -0.32 5.82 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.83 7.76 -51.93 -0.40 0.43 16 34 H 0.09 0.80 7.76 -51.93 -0.40 0.40 16 35 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.04 1.02 7.49 -51.93 -0.39 0.63 16 39 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 LS Contribution 349.72 15.07 5.27 5.27 Total: -1.00 -31.87 349.72 -6.05 -37.91 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -4.75 Total: 3.89 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -2.61 Total: -0.57 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.88 Total: -48.03 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.07 Total: -8.66 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.11 Total: -5.09 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.87 -6.05 -37.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536127359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.390 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds