Wall clock time and date at job start Fri Apr 10 2020 23:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.46850 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.46603 * 180.02562 * 9 8 6 11 11 C 1.53004 * 109.46901 * 179.97438 * 10 9 8 12 12 F 1.39902 * 109.47069 * 59.99657 * 11 10 9 13 13 F 1.39901 * 109.47223 * 179.97438 * 11 10 9 14 14 F 1.39905 * 109.47272 * 300.00159 * 11 10 9 15 15 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 16 16 C 1.46491 * 126.04623 * 179.87688 * 15 4 3 17 17 C 1.50702 * 109.46957 * 269.71277 * 16 15 4 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48504 * 109.47196 * 60.00645 * 21 19 17 23 23 H 1.48504 * 109.46887 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47679 * 300.00280 * 21 19 17 25 25 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 27 27 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 28 28 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 29 29 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 30 30 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 31 31 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 32 32 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 33 33 H 1.09005 * 109.47406 * 299.99990 * 9 8 6 34 34 H 1.08990 * 109.47361 * 60.00544 * 9 8 6 35 35 H 1.08995 * 109.46988 * 299.99815 * 10 9 8 36 36 H 1.09002 * 109.46909 * 60.00371 * 10 9 8 37 37 H 1.09004 * 109.47166 * 149.71543 * 16 15 4 38 38 H 1.08994 * 109.47507 * 29.71250 * 16 15 4 39 39 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 6 5.4088 5.2178 0.0307 10 6 6.6502 6.1122 0.0388 11 6 6.2208 7.5807 0.0423 12 9 5.4524 7.8390 1.1825 13 9 7.3558 8.3985 0.0502 14 9 5.4613 7.8473 -1.1020 15 7 3.6093 -0.6405 0.0013 16 6 4.7870 -1.5116 0.0026 17 6 5.1921 -1.8109 -1.4178 18 1 4.6288 -1.3935 -2.2393 19 6 6.2856 -2.6124 -1.6685 20 7 6.9718 -3.1203 -0.6681 21 14 6.7923 -2.9770 -3.4290 22 1 7.1127 -1.7052 -4.1255 23 1 7.9891 -3.8562 -3.4277 24 1 5.6777 -3.6601 -4.1337 25 7 2.2731 -1.0608 0.0005 26 1 -0.3634 0.0003 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3633 -0.8901 -0.5136 29 1 1.9901 2.1596 -0.0009 30 1 5.6359 1.1294 0.0155 31 1 6.4297 3.5415 0.9182 32 1 6.4372 3.5481 -0.8617 33 1 4.8172 5.4259 -0.8609 34 1 4.8102 5.4187 0.9191 35 1 7.2421 5.9042 0.9301 36 1 7.2486 5.9112 -0.8499 37 1 4.5494 -2.4431 0.5166 38 1 5.6079 -1.0120 0.5169 39 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000536127359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:59:18 Heat of formation + Delta-G solvation = -153.367570 kcal Electronic energy + Delta-G solvation = -26247.406566 eV Core-core repulsion = 21775.294672 eV Total energy + Delta-G solvation = -4472.111894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.02071 -48.53145 -48.51348 -42.39840 -40.60723 -36.32430 -35.97235 -35.53164 -33.82430 -31.30633 -30.58141 -29.42307 -27.80783 -25.73484 -24.70923 -23.22103 -22.10112 -21.20606 -20.67065 -19.47763 -19.23057 -18.87952 -18.58800 -18.14261 -17.47962 -17.08843 -16.64126 -16.18410 -15.93506 -15.53478 -15.44130 -15.22423 -14.98583 -14.88026 -14.67872 -14.65886 -14.51544 -14.41202 -14.04307 -13.69050 -13.60640 -13.37974 -13.16650 -13.08642 -12.89712 -12.79124 -12.69606 -12.37692 -12.27859 -11.91003 -11.80743 -11.67667 -11.42883 -10.87781 -10.75513 -9.62357 -9.04558 -8.35880 -6.53489 0.83146 1.36447 1.38432 1.41239 1.49625 1.67334 1.89810 2.08517 2.23905 2.37177 2.93647 2.94727 3.08996 3.17995 3.53952 3.84442 4.00362 4.02692 4.16519 4.34350 4.49488 4.60028 4.63797 4.70114 4.74056 4.84823 4.89116 4.94343 4.97060 5.03642 5.22090 5.22808 5.27015 5.51399 5.77610 5.96911 6.19497 6.32700 6.57963 7.00072 7.07664 7.18874 8.70292 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.011709 B = 0.003099 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.836930 B = 9032.701441 C =10811.869959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.057 3.943 3 C -0.310 4.310 4 C 0.300 3.700 5 N -0.641 5.641 6 C 0.514 3.486 7 O -0.546 6.546 8 C -0.121 4.121 9 C -0.108 4.108 10 C -0.156 4.156 11 C 0.447 3.553 12 F -0.194 7.194 13 F -0.190 7.190 14 F -0.195 7.195 15 N -0.368 5.368 16 C 0.273 3.727 17 C -0.558 4.558 18 H 0.047 0.953 19 C 0.030 3.970 20 N -0.913 5.913 21 Si 0.968 3.032 22 H -0.263 1.263 23 H -0.272 1.272 24 H -0.281 1.281 25 N -0.334 5.334 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.167 0.833 30 H 0.423 0.577 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.025 0.975 38 H 0.051 0.949 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.383 18.925 2.213 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 C -0.342 4.342 4 C 0.077 3.923 5 N -0.289 5.289 6 C 0.304 3.696 7 O -0.421 6.421 8 C -0.160 4.160 9 C -0.146 4.146 10 C -0.194 4.194 11 C 0.393 3.607 12 F -0.176 7.176 13 F -0.172 7.172 14 F -0.177 7.177 15 N -0.153 5.153 16 C 0.154 3.846 17 C -0.596 4.596 18 H 0.065 0.935 19 C -0.172 4.172 20 N -0.551 5.551 21 Si 0.792 3.208 22 H -0.187 1.187 23 H -0.197 1.197 24 H -0.206 1.206 25 N -0.160 5.160 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.090 0.910 29 H 0.184 0.816 30 H 0.261 0.739 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.043 0.957 38 H 0.069 0.931 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.967 17.895 2.276 18.146 hybrid contribution 0.607 0.224 -0.735 0.979 sum 2.574 18.119 1.540 18.366 Atomic orbital electron populations 1.20217 0.84073 1.03816 1.03824 1.22884 0.98699 0.90180 0.99071 1.21479 0.89209 1.00713 1.22809 1.18388 0.89847 0.82822 1.01245 1.43115 1.07395 1.06206 1.72165 1.21705 0.92989 0.80629 0.74287 1.90631 1.28860 1.73917 1.48725 1.21657 0.93799 0.92140 1.08424 1.21273 0.96465 0.92463 1.04419 1.22931 1.00649 0.85523 1.10271 1.21023 0.74518 0.92350 0.72809 1.93175 1.76876 1.95561 1.51969 1.93181 1.51338 1.76451 1.96215 1.93177 1.77343 1.95438 1.51706 1.49168 1.06242 1.02998 1.56906 1.19218 0.78641 0.88969 0.97765 1.21380 1.13545 1.32997 0.91648 0.93517 1.25660 0.95364 0.94239 1.01981 1.69981 1.19367 1.32832 1.32905 0.85457 0.77667 0.78768 0.78900 1.18743 1.19700 1.20624 1.77302 0.86582 1.23672 1.28407 0.89258 0.88894 0.90963 0.81554 0.73869 0.84663 0.85137 0.91129 0.90822 0.84426 0.84681 0.95739 0.93077 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.72 10.44 71.23 0.74 -0.98 16 2 C 0.06 2.28 7.21 43.07 0.31 2.59 16 3 C -0.31 -12.57 9.58 22.14 0.21 -12.36 16 4 C 0.30 12.44 7.66 131.32 1.01 13.45 16 5 N -0.64 -20.46 5.41 -308.55 -1.67 -22.13 16 6 C 0.51 13.73 7.79 87.66 0.68 14.42 16 7 O -0.55 -18.22 13.11 -3.07 -0.04 -18.26 16 8 C -0.12 -1.66 5.70 29.85 0.17 -1.49 16 9 C -0.11 -1.54 4.26 30.60 0.13 -1.41 16 10 C -0.16 -1.35 5.26 30.60 0.16 -1.18 16 11 C 0.45 6.67 3.16 71.98 0.23 6.90 16 12 F -0.19 -3.55 16.80 44.97 0.76 -2.79 16 13 F -0.19 -3.02 17.32 44.97 0.78 -2.24 16 14 F -0.19 -3.64 16.80 44.97 0.76 -2.89 16 15 N -0.37 -17.43 3.60 -348.73 -1.26 -18.69 16 16 C 0.27 13.78 6.01 85.64 0.51 14.29 16 17 C -0.56 -29.91 9.39 25.60 0.24 -29.67 16 18 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 19 C 0.03 1.53 5.46 84.66 0.46 1.99 16 20 N -0.91 -48.85 13.29 21.45 0.28 -48.57 16 21 Si 0.97 41.04 29.54 68.60 2.03 43.07 16 22 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 25 N -0.33 -15.89 12.56 -47.45 -0.60 -16.48 16 26 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 29 H 0.17 6.51 5.83 -2.91 -0.02 6.49 16 30 H 0.42 12.09 7.96 -92.70 -0.74 11.35 16 31 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.26 7.76 -2.38 -0.02 1.24 16 34 H 0.07 1.26 7.76 -2.39 -0.02 1.24 16 35 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.02 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.05 2.45 7.49 -2.39 -0.02 2.43 16 39 H 0.27 13.77 8.31 -92.70 -0.77 13.00 16 Total: -1.00 -71.01 349.72 6.26 -64.75 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.36 Total: 17.68 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 4.86 Total: 6.55 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -3.24 Total: -105.87 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.04 Total: -18.26 kcal Atomic # 9 Polarization: -10.21 SS G_CDS: 2.29 Total: -7.92 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -71.01 6.26 -64.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536127359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.616 kcal (2) G-P(sol) polarization free energy of solvation -71.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds