Wall clock time and date at job start Sat Apr 11 2020 00:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 120.00027 * 2 1 4 4 H 1.48506 * 109.47094 * 239.99996 * 3 2 1 5 5 H 1.48499 * 109.47294 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47114 * 120.00473 * 3 2 1 7 7 C 1.38948 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00235 * 179.97438 * 7 2 1 9 9 N 1.37093 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00276 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99814 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00386 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.46944 * 180.02562 * 12 10 9 14 14 C 1.34784 * 119.99561 * 180.02562 * 13 12 10 15 15 O 1.21589 * 119.99960 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99915 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00144 * 180.02562 * 16 14 13 18 18 C 1.50694 * 109.47141 * 179.97438 * 17 16 14 19 19 C 1.38291 * 120.11946 * 89.99957 * 18 17 16 20 20 C 1.37929 * 120.35446 * 180.17130 * 19 18 17 21 21 C 1.39289 * 120.24278 * 0.06555 * 20 19 18 22 22 C 1.38981 * 118.85498 * 359.58943 * 21 20 19 23 23 C 1.37660 * 120.77699 * 0.54611 * 22 21 20 24 24 C 1.51649 * 106.97907 * 180.57567 * 22 21 20 25 25 C 1.54713 * 101.93881 * 15.71381 * 24 22 21 26 26 O 1.36126 * 129.87617 * 179.56466 * 21 20 19 27 27 H 0.97003 * 119.99737 * 359.97438 * 1 2 3 28 28 H 0.97003 * 120.00484 * 359.97438 * 9 7 2 29 29 H 1.08994 * 109.46664 * 60.00309 * 12 10 9 30 30 H 1.08997 * 109.46972 * 300.00342 * 12 10 9 31 31 H 0.96998 * 120.00367 * 359.97438 * 13 12 10 32 32 H 0.97006 * 119.99702 * 359.97438 * 16 14 13 33 33 H 1.09002 * 109.46903 * 59.99300 * 17 16 14 34 34 H 1.09006 * 109.46740 * 299.99901 * 17 16 14 35 35 H 1.08007 * 119.81963 * 0.19443 * 19 18 17 36 36 H 1.07996 * 119.87833 * 180.02562 * 20 19 18 37 37 H 1.08003 * 119.98294 * 179.61345 * 23 22 21 38 38 H 1.09002 * 110.94508 * 257.54041 * 24 22 21 39 39 H 1.08997 * 110.93949 * 133.88365 * 24 22 21 40 40 H 1.09003 * 110.74698 * 92.94680 * 25 24 22 41 41 H 1.09001 * 110.74689 * 216.11069 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1020 1.6963 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5578 0.0010 12 6 1.2437 -4.8630 0.0011 13 7 2.1958 -5.9764 0.0016 14 6 1.7464 -7.2472 0.0017 15 8 0.5510 -7.4693 0.0018 16 7 2.6222 -8.2716 0.0026 17 6 2.1339 -9.6528 0.0021 18 6 3.3060 -10.6000 0.0028 19 6 3.8449 -11.0363 1.1993 20 6 4.9199 -11.9004 1.2056 21 6 5.4734 -12.3404 0.0055 22 6 4.9182 -11.9005 -1.1903 23 6 3.8470 -11.0359 -1.1936 24 6 5.7094 -12.5478 -2.3105 25 6 6.4594 -13.6754 -1.5624 26 8 6.5256 -13.1751 -0.2162 27 1 -0.4850 0.8401 0.0004 28 1 0.3534 -2.3907 0.0005 29 1 0.6168 -4.9209 -0.8886 30 1 0.6174 -4.9205 0.8913 31 1 3.1494 -5.7992 0.0012 32 1 3.5760 -8.0943 0.0029 33 1 1.5292 -9.8240 -0.8885 34 1 1.5274 -9.8240 0.8915 35 1 3.4215 -10.6988 2.1338 36 1 5.3345 -12.2366 2.1444 37 1 3.4296 -10.6973 -2.1304 38 1 6.4106 -11.8396 -2.7519 39 1 5.0444 -12.9592 -3.0698 40 1 5.8943 -14.6067 -1.6010 41 1 7.4586 -13.8144 -1.9752 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000561524133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:00:00 Heat of formation + Delta-G solvation = -72.841332 kcal Electronic energy + Delta-G solvation = -24812.582214 eV Core-core repulsion = 20885.818941 eV Total energy + Delta-G solvation = -3926.763274 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.48034 -39.85158 -38.40121 -37.94535 -34.73015 -34.33023 -33.61662 -33.09216 -31.38506 -30.92848 -29.64580 -27.75556 -25.82736 -24.30867 -23.73321 -22.33147 -21.34734 -20.69754 -19.56480 -18.44438 -17.97347 -17.77806 -17.11116 -16.62225 -16.26496 -15.67507 -15.50904 -15.08645 -14.64599 -14.49480 -14.36876 -14.22704 -13.91547 -13.68597 -13.60967 -13.42545 -13.37791 -12.90282 -12.67901 -12.21423 -12.15837 -11.88013 -11.82966 -11.61577 -11.27435 -11.13497 -11.09192 -10.49777 -10.30408 -10.05652 -9.61185 -9.27422 -9.14941 -8.60802 -8.57711 -8.48163 -8.08383 -6.49821 -3.91852 0.83913 0.95967 2.78991 2.88757 3.14797 3.22427 3.26241 3.40356 3.42214 3.77144 3.96702 4.10527 4.11745 4.44540 4.48287 4.54546 4.55355 4.80943 4.92120 4.92518 4.98256 5.15634 5.18822 5.28888 5.30049 5.35990 5.56624 5.70746 5.85364 5.94112 5.99440 6.03040 6.10319 6.19023 6.24742 6.49178 6.77153 6.78492 7.12403 7.47215 7.93846 8.25931 8.47060 8.81447 9.06156 9.41251 9.89348 10.66977 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.027020 B = 0.001876 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.012316 B =14922.563493 C =15419.187862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.598 6.598 12 C 0.129 3.871 13 N -0.724 5.724 14 C 0.705 3.295 15 O -0.599 6.599 16 N -0.746 5.746 17 C 0.188 3.812 18 C -0.134 4.134 19 C -0.062 4.062 20 C -0.140 4.140 21 C 0.110 3.890 22 C -0.179 4.179 23 C -0.048 4.048 24 C -0.111 4.111 25 C 0.051 3.949 26 O -0.306 6.306 27 H 0.275 0.725 28 H 0.396 0.604 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.407 0.593 32 H 0.398 0.602 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.324 -26.208 -2.319 27.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.122 0.878 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.382 5.382 14 C 0.404 3.596 15 O -0.478 6.478 16 N -0.403 5.403 17 C 0.064 3.936 18 C -0.134 4.134 19 C -0.081 4.081 20 C -0.159 4.159 21 C 0.065 3.935 22 C -0.179 4.179 23 C -0.066 4.066 24 C -0.148 4.148 25 C -0.024 4.024 26 O -0.219 6.219 27 H 0.084 0.916 28 H 0.230 0.770 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.244 0.756 32 H 0.231 0.769 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.153 0.847 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.035 -26.277 -2.181 27.564 hybrid contribution 0.665 0.998 -0.201 1.216 sum 8.700 -25.278 -2.383 26.839 Atomic orbital electron populations 1.69610 1.05987 1.28597 1.49288 1.25323 0.95674 0.99915 0.96827 0.85870 0.78763 0.80174 0.79128 1.19811 1.20868 1.19796 1.19675 0.93423 0.82031 1.48349 0.87757 1.41780 1.09489 1.04435 1.62700 1.19779 0.88298 0.85034 0.85475 1.90490 1.13775 1.86875 1.57347 1.20779 0.91215 0.84836 1.03137 1.44777 1.11241 1.03319 1.78833 1.15855 0.85163 0.80550 0.78007 1.90907 1.14035 1.84285 1.58529 1.45130 1.09185 1.04668 1.81328 1.19871 0.92566 0.78043 1.03124 1.19774 0.99541 1.01163 0.92962 1.20872 0.94192 0.94838 0.98179 1.20266 0.97919 1.01955 0.95721 1.19669 0.87597 0.91603 0.94631 1.20746 0.99794 1.02871 0.94534 1.20232 0.93618 0.94592 0.98207 1.21804 0.98574 0.97305 0.97096 1.23847 1.02358 0.96753 0.79412 1.86829 1.42549 1.59922 1.32642 0.91555 0.77005 0.90023 0.90007 0.75595 0.76858 0.90842 0.90683 0.84659 0.85190 0.85396 0.88987 0.88926 0.90460 0.87522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.93 13.05 55.50 0.72 -23.21 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.59 29.55 -169.99 -5.02 15.57 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.31 -8.32 9.68 -14.94 -0.14 -8.47 16 8 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 9 N -0.55 -13.67 5.29 -10.96 -0.06 -13.73 16 10 C 0.43 9.88 7.85 -10.98 -0.09 9.79 16 11 O -0.60 -15.36 15.24 5.55 0.08 -15.27 16 12 C 0.13 2.41 6.15 -5.19 -0.03 2.38 16 13 N -0.72 -12.26 5.53 -66.41 -0.37 -12.62 16 14 C 0.70 11.42 8.57 -86.91 -0.74 10.67 16 15 O -0.60 -11.65 16.34 5.29 0.09 -11.57 16 16 N -0.75 -8.97 5.55 -66.41 -0.37 -9.34 16 17 C 0.19 1.94 5.81 -5.20 -0.03 1.91 16 18 C -0.13 -1.19 5.25 -104.56 -0.55 -1.73 16 19 C -0.06 -0.52 9.68 -39.68 -0.38 -0.90 16 20 C -0.14 -1.22 10.06 -39.30 -0.40 -1.62 16 21 C 0.11 1.05 7.04 -38.92 -0.27 0.78 16 22 C -0.18 -1.53 6.27 -104.09 -0.65 -2.18 16 23 C -0.05 -0.41 9.69 -39.75 -0.39 -0.80 16 24 C -0.11 -0.65 7.11 -26.51 -0.19 -0.84 16 25 C 0.05 0.29 8.01 38.06 0.30 0.59 16 26 O -0.31 -2.85 11.10 -20.14 -0.22 -3.08 16 27 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.40 9.48 7.90 -40.82 -0.32 9.16 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.41 6.71 7.45 -40.82 -0.30 6.41 16 32 H 0.40 4.10 8.48 -40.82 -0.35 3.76 16 33 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 34 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 35 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 358.16 15.07 5.40 5.40 Total: -1.00 -33.16 358.16 -8.54 -41.70 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -5.13 Total: 16.00 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: -3.66 Total: 10.15 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.07 Total: -58.90 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.05 Total: -29.92 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.16 -8.54 -41.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561524133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.143 kcal (2) G-P(sol) polarization free energy of solvation -33.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds