Wall clock time and date at job start Fri Apr 10 2020 23:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 120.00027 * 2 1 4 4 H 1.48506 * 109.47094 * 239.99996 * 3 2 1 5 5 H 1.48499 * 109.47294 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47114 * 120.00473 * 3 2 1 7 7 C 1.38948 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00235 * 179.97438 * 7 2 1 9 9 N 1.37093 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00276 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99814 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00386 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.46944 * 180.02562 * 12 10 9 14 14 C 1.34784 * 119.99561 * 180.02562 * 13 12 10 15 15 O 1.21589 * 119.99960 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99915 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00144 * 180.02562 * 16 14 13 18 18 C 1.50694 * 109.47141 * 179.97438 * 17 16 14 19 19 C 1.38291 * 120.11946 * 89.99957 * 18 17 16 20 20 C 1.37929 * 120.35446 * 180.17130 * 19 18 17 21 21 C 1.39289 * 120.24278 * 0.06555 * 20 19 18 22 22 C 1.38981 * 118.85498 * 359.58943 * 21 20 19 23 23 C 1.37660 * 120.77699 * 0.54611 * 22 21 20 24 24 C 1.51649 * 106.97907 * 180.57567 * 22 21 20 25 25 C 1.54713 * 101.93881 * 15.71381 * 24 22 21 26 26 O 1.36126 * 129.87617 * 179.56466 * 21 20 19 27 27 H 0.97003 * 119.99737 * 359.97438 * 1 2 3 28 28 H 0.97003 * 120.00484 * 359.97438 * 9 7 2 29 29 H 1.08994 * 109.46664 * 60.00309 * 12 10 9 30 30 H 1.08997 * 109.46972 * 300.00342 * 12 10 9 31 31 H 0.96998 * 120.00367 * 359.97438 * 13 12 10 32 32 H 0.97006 * 119.99702 * 359.97438 * 16 14 13 33 33 H 1.09002 * 109.46903 * 59.99300 * 17 16 14 34 34 H 1.09006 * 109.46740 * 299.99901 * 17 16 14 35 35 H 1.08007 * 119.81963 * 0.19443 * 19 18 17 36 36 H 1.07996 * 119.87833 * 180.02562 * 20 19 18 37 37 H 1.08003 * 119.98294 * 179.61345 * 23 22 21 38 38 H 1.09002 * 110.94508 * 257.54041 * 24 22 21 39 39 H 1.08997 * 110.93949 * 133.88365 * 24 22 21 40 40 H 1.09003 * 110.74698 * 92.94680 * 25 24 22 41 41 H 1.09001 * 110.74689 * 216.11069 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1020 1.6963 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5578 0.0010 12 6 1.2437 -4.8630 0.0011 13 7 2.1958 -5.9764 0.0016 14 6 1.7464 -7.2472 0.0017 15 8 0.5510 -7.4693 0.0018 16 7 2.6222 -8.2716 0.0026 17 6 2.1339 -9.6528 0.0021 18 6 3.3060 -10.6000 0.0028 19 6 3.8449 -11.0363 1.1993 20 6 4.9199 -11.9004 1.2056 21 6 5.4734 -12.3404 0.0055 22 6 4.9182 -11.9005 -1.1903 23 6 3.8470 -11.0359 -1.1936 24 6 5.7094 -12.5478 -2.3105 25 6 6.4594 -13.6754 -1.5624 26 8 6.5256 -13.1751 -0.2162 27 1 -0.4850 0.8401 0.0004 28 1 0.3534 -2.3907 0.0005 29 1 0.6168 -4.9209 -0.8886 30 1 0.6174 -4.9205 0.8913 31 1 3.1494 -5.7992 0.0012 32 1 3.5760 -8.0943 0.0029 33 1 1.5292 -9.8240 -0.8885 34 1 1.5274 -9.8240 0.8915 35 1 3.4215 -10.6988 2.1338 36 1 5.3345 -12.2366 2.1444 37 1 3.4296 -10.6973 -2.1304 38 1 6.4106 -11.8396 -2.7519 39 1 5.0444 -12.9592 -3.0698 40 1 5.8943 -14.6067 -1.6010 41 1 7.4586 -13.8144 -1.9752 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000561524133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:59:59 Heat of formation + Delta-G solvation = -97.230146 kcal Electronic energy + Delta-G solvation = -24813.639793 eV Core-core repulsion = 20885.818941 eV Total energy + Delta-G solvation = -3927.820852 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.07982 -41.17209 -40.03640 -38.84082 -36.25265 -35.66263 -35.23572 -33.65106 -33.35870 -31.79725 -30.20025 -29.21776 -27.00803 -25.94263 -24.30183 -22.92705 -22.11225 -21.90990 -21.33783 -20.10741 -19.59822 -18.36629 -17.78310 -17.56108 -17.39994 -17.04162 -16.84730 -16.48344 -16.07566 -15.90176 -15.69193 -15.15786 -15.08468 -15.05563 -14.51996 -14.15571 -13.95655 -13.91883 -13.81709 -13.52629 -13.46734 -13.27170 -12.88214 -12.70482 -12.53194 -12.45608 -12.12878 -11.83186 -11.75148 -11.54924 -11.40900 -10.53936 -10.41583 -10.08851 -9.90371 -9.79396 -9.13578 -8.49434 -5.99653 0.15353 0.31867 1.39228 1.43434 1.54033 1.68945 1.91785 2.14248 2.28718 2.30873 2.66904 3.10609 3.17747 3.40712 3.44578 3.59657 3.77415 3.93641 4.14995 4.18233 4.23650 4.36504 4.41131 4.46300 4.49400 4.65599 4.66638 4.72747 4.86599 4.88050 5.09210 5.19921 5.33201 5.36054 5.39860 5.45088 5.54834 5.60434 5.92613 5.97210 6.16799 6.49882 7.03903 7.04919 7.44428 7.55051 7.96434 8.67141 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.027020 B = 0.001876 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.012316 B =14922.563493 C =15419.187862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.625 6.625 12 C 0.142 3.858 13 N -0.725 5.725 14 C 0.706 3.294 15 O -0.631 6.631 16 N -0.729 5.729 17 C 0.190 3.810 18 C -0.136 4.136 19 C -0.063 4.063 20 C -0.150 4.150 21 C 0.094 3.906 22 C -0.187 4.187 23 C -0.053 4.053 24 C -0.109 4.109 25 C 0.045 3.955 26 O -0.326 6.326 27 H 0.280 0.720 28 H 0.399 0.601 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.410 0.590 32 H 0.408 0.592 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.898 -26.856 -2.748 28.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.220 3.780 11 O -0.513 6.513 12 C 0.013 3.987 13 N -0.382 5.382 14 C 0.405 3.595 15 O -0.512 6.512 16 N -0.385 5.385 17 C 0.067 3.933 18 C -0.137 4.137 19 C -0.081 4.081 20 C -0.168 4.168 21 C 0.048 3.952 22 C -0.188 4.188 23 C -0.071 4.071 24 C -0.146 4.146 25 C -0.029 4.029 26 O -0.241 6.241 27 H 0.089 0.911 28 H 0.233 0.767 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.247 0.753 32 H 0.243 0.757 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.115 0.885 39 H 0.128 0.872 40 H 0.107 0.893 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.629 -26.968 -2.615 28.435 hybrid contribution 0.530 1.072 -0.077 1.198 sum 9.159 -25.896 -2.692 27.600 Atomic orbital electron populations 1.69677 1.06975 1.29666 1.49227 1.26131 0.96555 1.02678 0.95823 0.84925 0.77703 0.76259 0.79070 1.19515 1.19649 1.19522 1.19698 0.92964 0.83566 1.50477 0.89583 1.41828 1.09602 1.04570 1.63473 1.20443 0.88117 0.85940 0.83461 1.90467 1.15218 1.87573 1.58025 1.20582 0.90979 0.82996 1.04095 1.44703 1.10986 1.03303 1.79255 1.15924 0.85090 0.80708 0.77747 1.90887 1.15567 1.84689 1.60105 1.45070 1.09233 1.04514 1.79723 1.19921 0.93187 0.77117 1.03045 1.19639 0.99341 1.01274 0.93471 1.21015 0.93995 0.94563 0.98561 1.20472 0.98107 1.02059 0.96202 1.19953 0.87916 0.92018 0.95276 1.21062 0.99719 1.02630 0.95385 1.20374 0.93676 0.94589 0.98483 1.21892 0.98631 0.97341 0.96726 1.24134 1.03909 0.96960 0.77855 1.86798 1.42620 1.60028 1.34617 0.91084 0.76670 0.88993 0.88995 0.75292 0.75665 0.90971 0.90739 0.83442 0.84235 0.84456 0.88453 0.87202 0.89305 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.64 13.05 21.66 0.28 -48.36 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 3 Si 1.00 41.74 29.55 68.60 2.03 43.77 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 6 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 7 C -0.34 -18.61 9.68 84.04 0.81 -17.79 16 8 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 9 N -0.56 -28.10 5.29 -306.98 -1.62 -29.72 16 10 C 0.43 20.01 7.85 87.66 0.69 20.69 16 11 O -0.62 -32.24 15.24 -3.06 -0.05 -32.29 16 12 C 0.14 5.22 6.15 85.63 0.53 5.75 16 13 N -0.72 -23.88 5.53 -482.29 -2.67 -26.55 16 14 C 0.71 22.12 8.57 179.05 1.53 23.65 16 15 O -0.63 -24.00 16.34 -4.00 -0.07 -24.07 16 16 N -0.73 -16.61 5.55 -482.29 -2.68 -19.29 16 17 C 0.19 3.71 5.81 85.63 0.50 4.20 16 18 C -0.14 -2.26 5.25 -19.83 -0.10 -2.37 16 19 C -0.06 -0.98 9.68 22.21 0.21 -0.77 16 20 C -0.15 -2.50 10.06 22.45 0.23 -2.27 16 21 C 0.09 1.71 7.04 22.70 0.16 1.87 16 22 C -0.19 -2.97 6.27 -19.52 -0.12 -3.09 16 23 C -0.05 -0.83 9.69 22.16 0.21 -0.62 16 24 C -0.11 -1.08 7.11 30.74 0.22 -0.86 16 25 C 0.05 0.43 8.01 72.57 0.58 1.01 16 26 O -0.33 -5.78 11.10 -94.99 -1.05 -6.83 16 27 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 28 H 0.40 19.27 7.90 -92.71 -0.73 18.53 16 29 H 0.09 3.23 8.14 -2.39 -0.02 3.22 16 30 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 31 H 0.41 13.20 7.45 -92.71 -0.69 12.51 16 32 H 0.41 7.83 8.48 -92.70 -0.79 7.04 16 33 H 0.07 1.46 8.09 -2.39 -0.02 1.44 16 34 H 0.07 1.49 8.09 -2.38 -0.02 1.47 16 35 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 36 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 38 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -70.14 358.16 -1.01 -71.15 By element: Atomic # 1 Polarization: 43.99 SS G_CDS: -1.10 Total: 42.89 kcal Atomic # 6 Polarization: 23.38 SS G_CDS: 5.92 Total: 29.29 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -6.69 Total: -123.91 kcal Atomic # 8 Polarization: -62.02 SS G_CDS: -1.17 Total: -63.19 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -70.14 -1.01 -71.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561524133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.076 kcal (2) G-P(sol) polarization free energy of solvation -70.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds