Wall clock time and date at job start Fri Apr 10 2020 23:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47281 * 2 1 4 4 O 1.21294 * 119.99860 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00047 * 180.02562 * 3 2 1 6 6 C 1.40033 * 119.99963 * 175.39540 * 5 3 2 7 7 C 1.38905 * 119.98967 * 215.71688 * 6 5 3 8 8 C 1.38010 * 119.99989 * 180.23431 * 7 6 5 9 9 C 1.38947 * 119.99890 * 359.51115 * 8 7 6 10 10 N 1.39825 * 120.00757 * 180.27948 * 9 8 7 11 11 C 1.34776 * 120.00193 * 33.49686 * 10 9 8 12 12 O 1.21384 * 119.99838 * 5.09836 * 11 10 9 13 13 C 1.49334 * 119.99828 * 185.09237 * 11 10 9 14 14 O 1.21359 * 120.00049 * 359.97438 * 13 11 10 15 15 N 1.34780 * 119.99705 * 180.02562 * 13 11 10 16 16 C 1.46501 * 119.99937 * 180.02562 * 15 13 11 17 17 C 1.50695 * 109.47075 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00296 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00091 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99935 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00208 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47158 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46874 * 119.99961 * 21 19 17 24 24 H 1.48500 * 109.46983 * 240.00142 * 21 19 17 25 25 C 1.38944 * 119.98498 * 0.25921 * 9 8 7 26 26 C 1.38012 * 119.99388 * 359.97438 * 25 9 8 27 27 H 1.09010 * 109.46864 * 300.00378 * 1 2 3 28 28 H 1.08995 * 109.46769 * 60.00002 * 1 2 3 29 29 H 1.08994 * 109.47563 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47040 * 239.99447 * 2 1 3 31 31 H 1.09004 * 109.46937 * 119.99870 * 2 1 3 32 32 H 0.97004 * 120.00371 * 355.38797 * 5 3 2 33 33 H 1.07992 * 120.00030 * 0.02562 * 7 6 5 34 34 H 1.08005 * 120.00238 * 179.79500 * 8 7 6 35 35 H 0.97005 * 119.99392 * 213.50116 * 10 9 8 36 36 H 0.97002 * 119.99533 * 359.97438 * 15 13 11 37 37 H 1.09002 * 109.46668 * 299.99513 * 16 15 13 38 38 H 1.08995 * 109.47002 * 59.99444 * 16 15 13 39 39 H 0.97000 * 119.99699 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.00034 * 180.02562 * 25 9 8 41 41 H 1.08009 * 119.99510 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8249 2.9834 -0.0979 7 6 4.9874 3.2567 -0.8075 8 6 5.4509 4.5534 -0.8995 9 6 4.7493 5.5868 -0.2909 10 7 5.2156 6.9014 -0.3889 11 6 5.8503 7.3098 -1.5056 12 8 5.9358 6.5664 -2.4613 13 6 6.4481 8.6768 -1.5669 14 8 6.3621 9.4202 -0.6115 15 7 7.0824 9.0854 -2.6838 16 6 7.6694 10.4263 -2.7438 17 6 8.3145 10.6324 -4.0900 18 1 8.2902 9.8433 -4.8271 19 6 8.9359 11.8283 -4.3809 20 7 8.9661 12.7890 -3.4832 21 14 9.7363 12.0835 -6.0494 22 1 9.5655 10.8595 -6.8727 23 1 9.0951 13.2342 -6.7351 24 1 11.1839 12.3600 -5.8668 25 6 3.5840 5.3137 0.4148 26 6 3.1234 4.0162 0.5106 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.9874 0.9324 0.0666 33 1 5.5302 2.4541 -1.2843 34 1 6.3565 4.7655 -1.4484 35 1 5.0823 7.5193 0.3468 36 1 7.1508 8.4913 -3.4475 37 1 6.8879 11.1719 -2.5971 38 1 8.4212 10.5292 -1.9614 39 1 9.4029 13.6305 -3.6880 40 1 3.0382 6.1168 0.8876 41 1 2.2173 3.8040 1.0588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427876588.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:59:01 Heat of formation + Delta-G solvation = -81.155704 kcal Electronic energy + Delta-G solvation = -24938.803245 eV Core-core repulsion = 21011.679433 eV Total energy + Delta-G solvation = -3927.123812 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.05619 -40.44962 -38.87219 -37.80055 -35.75769 -34.57178 -33.84941 -33.15069 -32.37977 -31.13972 -29.08965 -27.70244 -25.49650 -24.34667 -23.41311 -22.54558 -21.56765 -20.67579 -19.85625 -18.70411 -18.07039 -17.51674 -17.38910 -16.46744 -16.15385 -15.73431 -15.57945 -15.10126 -14.88760 -14.63294 -14.34893 -14.15411 -13.98235 -13.82952 -13.30480 -13.22637 -13.04085 -12.97101 -12.65283 -12.22010 -12.08410 -11.92945 -11.65698 -11.54765 -11.26079 -11.11710 -10.99471 -10.95519 -10.34999 -10.24530 -9.74103 -9.47811 -9.19050 -9.04979 -8.85044 -8.13518 -7.91432 -6.23443 -4.30771 0.89849 1.25218 1.80745 2.23092 2.59552 2.74077 3.21901 3.29458 3.33460 3.50809 3.74121 4.05209 4.19773 4.31238 4.55138 4.59027 4.69812 4.84445 5.00451 5.05836 5.13468 5.14783 5.27541 5.31311 5.34066 5.46311 5.58636 5.78357 5.90013 6.08878 6.18138 6.24257 6.33789 6.82954 6.99082 7.01528 7.07064 7.21623 7.34702 7.54293 7.74132 7.83867 7.87010 8.35993 8.54582 8.81298 9.35672 10.86647 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.034487 B = 0.001934 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.703682 B =14476.481164 C =14880.763877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.142 4.142 3 C 0.508 3.492 4 O -0.520 6.520 5 N -0.673 5.673 6 C 0.120 3.880 7 C -0.122 4.122 8 C -0.103 4.103 9 C 0.139 3.861 10 N -0.650 5.650 11 C 0.509 3.491 12 O -0.505 6.505 13 C 0.491 3.509 14 O -0.536 6.536 15 N -0.670 5.670 16 C 0.245 3.755 17 C -0.546 4.546 18 H 0.067 0.933 19 C 0.065 3.935 20 N -0.885 5.885 21 Si 0.907 3.093 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.281 1.281 25 C -0.126 4.126 26 C -0.099 4.099 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.410 0.590 33 H 0.129 0.871 34 H 0.141 0.859 35 H 0.423 0.577 36 H 0.404 0.596 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.267 0.733 40 H 0.132 0.868 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.776 -26.512 9.319 30.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.182 4.182 3 C 0.296 3.704 4 O -0.395 6.395 5 N -0.319 5.319 6 C 0.026 3.974 7 C -0.142 4.142 8 C -0.124 4.124 9 C 0.044 3.956 10 N -0.297 5.297 11 C 0.291 3.709 12 O -0.378 6.378 13 C 0.270 3.730 14 O -0.415 6.415 15 N -0.319 5.319 16 C 0.126 3.874 17 C -0.585 4.585 18 H 0.085 0.915 19 C -0.139 4.139 20 N -0.522 5.522 21 Si 0.734 3.266 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.147 4.147 26 C -0.119 4.119 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.246 0.754 33 H 0.147 0.853 34 H 0.159 0.841 35 H 0.261 0.739 36 H 0.239 0.761 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.150 0.850 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.248 -25.608 9.279 29.864 hybrid contribution 0.815 -0.080 -0.875 1.199 sum -11.432 -25.688 8.403 29.346 Atomic orbital electron populations 1.21549 0.92664 1.01848 1.03598 1.21641 0.98989 0.92964 1.04627 1.21020 0.81621 0.92359 0.75375 1.90727 1.55062 1.46280 1.47394 1.43539 1.07844 1.07173 1.73341 1.17726 0.96082 0.84369 0.99243 1.20753 0.97086 0.96953 0.99445 1.20993 1.00420 0.90706 1.00238 1.17800 0.93912 0.83746 1.00145 1.43256 1.56097 1.11197 1.19194 1.20901 0.78565 0.89066 0.82321 1.90742 1.56123 1.55815 1.35132 1.19673 0.81754 0.86481 0.85138 1.90738 1.59582 1.55098 1.36036 1.46425 1.51718 1.19411 1.14356 1.19364 0.93763 0.76188 0.98125 1.21240 1.37203 1.00893 0.99117 0.91478 1.24942 0.95745 0.95443 0.97767 1.69977 1.42849 1.05213 1.34163 0.86307 0.78964 0.78366 0.82996 1.19507 1.20726 1.20726 1.20850 0.94311 0.97322 1.02173 1.21002 1.00478 0.91154 0.99289 0.91845 0.91796 0.91856 0.88563 0.88635 0.75423 0.85304 0.84148 0.73873 0.76068 0.94657 0.94661 0.92371 0.85015 0.84089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.20 37.16 0.34 -0.40 16 2 C -0.14 -0.61 6.42 -27.88 -0.18 -0.78 16 3 C 0.51 4.18 7.67 -10.99 -0.08 4.10 16 4 O -0.52 -6.42 13.44 5.55 0.07 -6.35 16 5 N -0.67 -4.80 5.34 -9.82 -0.05 -4.85 16 6 C 0.12 1.22 6.30 -83.62 -0.53 0.70 16 7 C -0.12 -1.25 9.96 -39.42 -0.39 -1.64 16 8 C -0.10 -1.30 8.65 -39.40 -0.34 -1.65 16 9 C 0.14 1.81 6.28 -83.69 -0.53 1.28 16 10 N -0.65 -9.05 5.33 -10.27 -0.05 -9.10 16 11 C 0.51 8.60 7.62 -11.64 -0.09 8.51 16 12 O -0.50 -9.11 14.16 5.47 0.08 -9.03 16 13 C 0.49 9.78 7.89 -11.64 -0.09 9.69 16 14 O -0.54 -11.77 16.48 5.49 0.09 -11.68 16 15 N -0.67 -14.38 5.54 -61.95 -0.34 -14.72 16 16 C 0.25 6.34 5.43 -5.20 -0.03 6.31 16 17 C -0.55 -14.67 9.28 -34.44 -0.32 -14.99 16 18 H 0.07 1.71 7.60 -52.49 -0.40 1.32 16 19 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.88 -25.48 13.29 55.43 0.74 -24.74 16 21 Si 0.91 20.71 29.54 -169.99 -5.02 15.69 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.13 -1.44 9.96 -39.40 -0.39 -1.84 16 26 C -0.10 -1.12 8.69 -39.42 -0.34 -1.46 16 27 H 0.06 0.40 8.10 -51.92 -0.42 -0.02 16 28 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.41 1.43 8.82 -40.82 -0.36 1.07 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.14 1.92 6.41 -52.48 -0.34 1.58 16 35 H 0.42 5.21 8.30 -40.82 -0.34 4.87 16 36 H 0.40 8.04 7.79 -40.82 -0.32 7.73 16 37 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.14 1.64 6.25 -52.48 -0.33 1.31 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -33.66 359.72 -7.15 -40.81 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.02 Total: 9.05 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: -3.07 Total: 9.51 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.29 Total: -53.42 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: 0.24 Total: -27.06 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.66 -7.15 -40.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427876588.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.345 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds